data_5IRV
#
_model_server_result.job_id            nVx7FV6q-3dMdDB9mMNwLw 
_model_server_result.datetime_utc      '2024-10-16 00:17:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":600}' 
#
_entry.id    5IRV 
#
_exptl.entry_id    5IRV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRV 
_cell.length_a            90.954 
_cell.length_b            153.499 
_cell.length_c            169.035 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E FE HEM . A HEM 600 1_555 F N27 6D8 . A 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc2 G FE HEM . B HEM 600 1_555 H N26 6D8 . B 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc3 G FE HEM . B HEM 600 1_555 H N27 6D8 . B 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 I FE HEM . C HEM 600 1_555 J N27 6D8 . C 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc5 K FE HEM . D HEM 600 1_555 L N26 6D8 . D 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc6 K FE HEM . D HEM 600 1_555 L N27 6D8 . D 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 176 n n 
CHA C4D HEM doub 177 n n 
CHA HHA HEM sing 178 n n 
CHB C4A HEM sing 179 n n 
CHB C1B HEM doub 180 n n 
CHB HHB HEM sing 181 n n 
CHC C4B HEM sing 182 n n 
CHC C1C HEM doub 183 n n 
CHC HHC HEM sing 184 n n 
CHD C4C HEM doub 185 n n 
CHD C1D HEM sing 186 n n 
CHD HHD HEM sing 187 n n 
C1A C2A HEM doub 188 n y 
C1A NA HEM sing 189 n y 
C2A C3A HEM sing 190 n y 
C2A CAA HEM sing 191 n n 
C3A C4A HEM doub 192 n y 
C3A CMA HEM sing 193 n n 
C4A NA HEM sing 194 n y 
CMA HMA HEM sing 195 n n 
CMA HMAA HEM sing 196 n n 
CMA HMAB HEM sing 197 n n 
CAA CBA HEM sing 198 n n 
CAA HAA HEM sing 199 n n 
CAA HAAA HEM sing 200 n n 
CBA CGA HEM sing 201 n n 
CBA HBA HEM sing 202 n n 
CBA HBAA HEM sing 203 n n 
CGA O1A HEM doub 204 n n 
CGA O2A HEM sing 205 n n 
C1B C2B HEM sing 206 n n 
C1B NB HEM sing 207 n n 
C2B C3B HEM doub 208 n n 
C2B CMB HEM sing 209 n n 
C3B C4B HEM sing 210 n n 
C3B CAB HEM sing 211 n n 
C4B NB HEM doub 212 n n 
CMB HMB HEM sing 213 n n 
CMB HMBA HEM sing 214 n n 
CMB HMBB HEM sing 215 n n 
CAB CBB HEM doub 216 n n 
CAB HAB HEM sing 217 n n 
CBB HBB HEM sing 218 n n 
CBB HBBA HEM sing 219 n n 
C1C C2C HEM sing 220 n y 
C1C NC HEM sing 221 n y 
C2C C3C HEM doub 222 n y 
C2C CMC HEM sing 223 n n 
C3C C4C HEM sing 224 n y 
C3C CAC HEM sing 225 n n 
C4C NC HEM sing 226 n y 
CMC HMC HEM sing 227 n n 
CMC HMCA HEM sing 228 n n 
CMC HMCB HEM sing 229 n n 
CAC CBC HEM doub 230 n n 
CAC HAC HEM sing 231 n n 
CBC HBC HEM sing 232 n n 
CBC HBCA HEM sing 233 n n 
C1D C2D HEM sing 234 n n 
C1D ND HEM doub 235 n n 
C2D C3D HEM doub 236 n n 
C2D CMD HEM sing 237 n n 
C3D C4D HEM sing 238 n n 
C3D CAD HEM sing 239 n n 
C4D ND HEM sing 240 n n 
CMD HMD HEM sing 241 n n 
CMD HMDA HEM sing 242 n n 
CMD HMDB HEM sing 243 n n 
CAD CBD HEM sing 244 n n 
CAD HAD HEM sing 245 n n 
CAD HADA HEM sing 246 n n 
CBD CGD HEM sing 247 n n 
CBD HBD HEM sing 248 n n 
CBD HBDA HEM sing 249 n n 
CGD O1D HEM doub 250 n n 
CGD O2D HEM sing 251 n n 
O2A H2A HEM sing 252 n n 
O2D H2D HEM sing 253 n n 
FE NA HEM sing 254 n n 
FE NB HEM sing 255 n n 
FE NC HEM sing 256 n n 
FE ND HEM sing 257 n n 
#
_atom_sites.entry_id                     5IRV 
_atom_sites.fract_transf_matrix[1][1]    0.010995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 600 600 HEM HEM . 
F 3 6D8 A 1 601 601 6D8 LIG . 
G 2 HEM B 1 600 600 HEM HEM . 
H 3 6D8 B 1 601 601 6D8 LIG . 
I 2 HEM C 1 600 600 HEM HEM . 
J 3 6D8 C 1 601 601 6D8 LIG . 
K 2 HEM D 1 600 600 HEM HEM . 
L 3 6D8 D 1 601 601 6D8 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . I 2 62.245 -143.164 23.595 1 51.04 ? CHA HEM 600 C 1 
HETATM 2 C CHB HEM . . . I 2 61.73 -143.667 18.805 1 45.79 ? CHB HEM 600 C 1 
HETATM 3 C CHC HEM . . . I 2 60.823 -148.346 19.547 1 53.12 ? CHC HEM 600 C 1 
HETATM 4 C CHD HEM . . . I 2 61.22 -147.853 24.347 1 56.58 ? CHD HEM 600 C 1 
HETATM 5 C C1A HEM . . . I 2 62.129 -142.886 22.255 1 50.98 ? C1A HEM 600 C 1 
HETATM 6 C C2A HEM . . . I 2 62.247 -141.577 21.656 1 45.01 ? C2A HEM 600 C 1 
HETATM 7 C C3A HEM . . . I 2 62.088 -141.709 20.336 1 44.94 ? C3A HEM 600 C 1 
HETATM 8 C C4A HEM . . . I 2 61.904 -143.112 20.049 1 49.31 ? C4A HEM 600 C 1 
HETATM 9 C CMA HEM . . . I 2 62.112 -140.589 19.278 1 46.61 ? CMA HEM 600 C 1 
HETATM 10 C CAA HEM . . . I 2 62.452 -140.259 22.433 1 49 ? CAA HEM 600 C 1 
HETATM 11 C CBA HEM . . . I 2 63.818 -139.694 22.058 1 53.76 ? CBA HEM 600 C 1 
HETATM 12 C CGA HEM . . . I 2 64.09 -138.433 22.835 1 49.27 ? CGA HEM 600 C 1 
HETATM 13 O O1A HEM . . . I 2 63.153 -137.924 23.505 1 39.22 ? O1A HEM 600 C 1 
HETATM 14 O O2A HEM . . . I 2 65.244 -137.935 22.774 1 45.02 ? O2A HEM 600 C 1 
HETATM 15 C C1B HEM . . . I 2 61.469 -144.997 18.587 1 44.93 ? C1B HEM 600 C 1 
HETATM 16 C C2B HEM . . . I 2 61.291 -145.634 17.297 1 49.44 ? C2B HEM 600 C 1 
HETATM 17 C C3B HEM . . . I 2 61.062 -146.941 17.514 1 55.77 ? C3B HEM 600 C 1 
HETATM 18 C C4B HEM . . . I 2 61.048 -147.137 18.942 1 55.22 ? C4B HEM 600 C 1 
HETATM 19 C CMB HEM . . . I 2 61.433 -144.85 15.977 1 47.27 ? CMB HEM 600 C 1 
HETATM 20 C CAB HEM . . . I 2 60.775 -148.132 16.566 1 44.79 ? CAB HEM 600 C 1 
HETATM 21 C CBB HEM . . . I 2 60.831 -148.083 15.236 1 56.78 ? CBB HEM 600 C 1 
HETATM 22 C C1C HEM . . . I 2 60.902 -148.617 20.884 1 54.7 ? C1C HEM 600 C 1 
HETATM 23 C C2C HEM . . . I 2 60.831 -149.941 21.434 1 48.28 ? C2C HEM 600 C 1 
HETATM 24 C C3C HEM . . . I 2 60.944 -149.844 22.756 1 45.99 ? C3C HEM 600 C 1 
HETATM 25 C C4C HEM . . . I 2 61.077 -148.431 23.1 1 52.12 ? C4C HEM 600 C 1 
HETATM 26 C CMC HEM . . . I 2 60.671 -151.223 20.588 1 54 ? CMC HEM 600 C 1 
HETATM 27 C CAC HEM . . . I 2 60.907 -151.07 23.693 1 59.05 ? CAC HEM 600 C 1 
HETATM 28 C CBC HEM . . . I 2 61.455 -151.025 24.909 1 67.34 ? CBC HEM 600 C 1 
HETATM 29 C C1D HEM . . . I 2 61.51 -146.52 24.575 1 46.09 ? C1D HEM 600 C 1 
HETATM 30 C C2D HEM . . . I 2 61.629 -145.849 25.861 1 40.97 ? C2D HEM 600 C 1 
HETATM 31 C C3D HEM . . . I 2 61.918 -144.566 25.635 1 46.17 ? C3D HEM 600 C 1 
HETATM 32 C C4D HEM . . . I 2 61.982 -144.365 24.207 1 44.72 ? C4D HEM 600 C 1 
HETATM 33 C CMD HEM . . . I 2 61.467 -146.497 27.253 1 40.57 ? CMD HEM 600 C 1 
HETATM 34 C CAD HEM . . . I 2 62.136 -143.448 26.679 1 48.38 ? CAD HEM 600 C 1 
HETATM 35 C CBD HEM . . . I 2 63.621 -143.311 26.992 1 45.18 ? CBD HEM 600 C 1 
HETATM 36 C CGD HEM . . . I 2 63.839 -142.196 27.981 1 42.78 ? CGD HEM 600 C 1 
HETATM 37 O O1D HEM . . . I 2 64.883 -142.218 28.68 1 42.63 ? O1D HEM 600 C 1 
HETATM 38 O O2D HEM . . . I 2 62.97 -141.295 28.079 1 46.74 ? O2D HEM 600 C 1 
HETATM 39 N NA HEM . . . I 2 61.939 -143.804 21.244 1 51.46 ? NA HEM 600 C 1 
HETATM 40 N NB HEM . . . I 2 61.306 -145.943 19.574 1 43.72 ? NB HEM 600 C 1 
HETATM 41 N NC HEM . . . I 2 61.051 -147.716 21.918 1 58.6 ? NC HEM 600 C 1 
HETATM 42 N ND HEM . . . I 2 61.731 -145.573 23.592 1 36.19 ? ND HEM 600 C 1 
HETATM 43 FE FE HEM . . . I 2 61.467 -145.735 21.593 1 28.03 ? FE HEM 600 C 1 
HETATM 44 H HHB HEM . . . I 2 61.55 -143.052 18.064 1 54.95 ? HHB HEM 600 C 1 
HETATM 45 H HHC HEM . . . I 2 60.58 -149.093 18.961 1 63.74 ? HHC HEM 600 C 1 
HETATM 46 H HHD HEM . . . I 2 60.931 -148.384 25.119 1 67.9 ? HHD HEM 600 C 1 
HETATM 47 H HMA HEM . . . I 2 61.402 -139.942 19.471 1 55.93 ? HMA HEM 600 C 1 
HETATM 48 H HMAA HEM . . . I 2 61.968 -140.976 18.389 1 55.93 ? HMAA HEM 600 C 1 
HETATM 49 H HMAB HEM . . . I 2 62.981 -140.137 19.3 1 55.93 ? HMAB HEM 600 C 1 
HETATM 50 H HAA HEM . . . I 2 62.421 -140.434 23.387 1 58.8 ? HAA HEM 600 C 1 
HETATM 51 H HAAA HEM . . . I 2 61.758 -139.626 22.193 1 58.8 ? HAAA HEM 600 C 1 
HETATM 52 H HBA HEM . . . I 2 63.833 -139.495 21.109 1 64.51 ? HBA HEM 600 C 1 
HETATM 53 H HBAA HEM . . . I 2 64.503 -140.349 22.26 1 64.51 ? HBAA HEM 600 C 1 
HETATM 54 H HMB HEM . . . I 2 60.783 -144.131 15.956 1 56.73 ? HMB HEM 600 C 1 
HETATM 55 H HMBA HEM . . . I 2 61.279 -145.448 15.228 1 56.73 ? HMBA HEM 600 C 1 
HETATM 56 H HMBB HEM . . . I 2 62.328 -144.48 15.915 1 56.73 ? HMBB HEM 600 C 1 
HETATM 57 H HAB HEM . . . I 2 60.537 -148.97 16.968 1 53.75 ? HAB HEM 600 C 1 
HETATM 58 H HBB HEM . . . I 2 60.632 -148.875 14.713 1 68.13 ? HBB HEM 600 C 1 
HETATM 59 H HBBA HEM . . . I 2 61.067 -147.254 14.791 1 68.13 ? HBBA HEM 600 C 1 
HETATM 60 H HMC HEM . . . I 2 60.647 -151.996 21.174 1 64.81 ? HMC HEM 600 C 1 
HETATM 61 H HMCA HEM . . . I 2 61.42 -151.303 19.977 1 64.81 ? HMCA HEM 600 C 1 
HETATM 62 H HMCB HEM . . . I 2 59.844 -151.176 20.083 1 64.81 ? HMCB HEM 600 C 1 
HETATM 63 H HAC HEM . . . I 2 60.483 -151.878 23.397 1 70.85 ? HAC HEM 600 C 1 
HETATM 64 H HBC HEM . . . I 2 61.426 -151.807 25.483 1 80.8 ? HBC HEM 600 C 1 
HETATM 65 H HBCA HEM . . . I 2 61.886 -150.213 25.217 1 80.8 ? HBCA HEM 600 C 1 
HETATM 66 H HMD HEM . . . I 2 61.599 -145.818 27.947 1 48.68 ? HMD HEM 600 C 1 
HETATM 67 H HMDA HEM . . . I 2 62.132 -147.209 27.362 1 48.68 ? HMDA HEM 600 C 1 
HETATM 68 H HMDB HEM . . . I 2 60.567 -146.876 27.334 1 48.68 ? HMDB HEM 600 C 1 
HETATM 69 H HAD HEM . . . I 2 61.655 -143.669 27.492 1 58.06 ? HAD HEM 600 C 1 
HETATM 70 H HADA HEM . . . I 2 61.802 -142.608 26.326 1 58.06 ? HADA HEM 600 C 1 
HETATM 71 H HBD HEM . . . I 2 64.106 -143.115 26.175 1 54.22 ? HBD HEM 600 C 1 
HETATM 72 H HBDA HEM . . . I 2 63.949 -144.143 27.369 1 54.22 ? HBDA HEM 600 C 1 
HETATM 73 H HHA HEM . . . I 2 62.546 -142.432 24.173 1 61.25 ? HHA HEM 600 C 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           73 
#