data_5IRV
#
_model_server_result.job_id            QPlIo8xkRBYt5nMH2OW2Ew 
_model_server_result.datetime_utc      '2024-10-16 00:20:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    5IRV 
#
_exptl.entry_id    5IRV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              399.339 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            VT-464 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRV 
_cell.length_a            90.954 
_cell.length_b            153.499 
_cell.length_c            169.035 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E FE HEM . A HEM 600 1_555 F N27 6D8 . A 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc2 G FE HEM . B HEM 600 1_555 H N26 6D8 . B 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc3 G FE HEM . B HEM 600 1_555 H N27 6D8 . B 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc4 I FE HEM . C HEM 600 1_555 J N27 6D8 . C 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc5 K FE HEM . D HEM 600 1_555 L N26 6D8 . D 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc6 K FE HEM . D HEM 600 1_555 L N27 6D8 . D 6D8 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
#
_chem_comp.formula           'C18 H17 F4 N3 O3' 
_chem_comp.formula_weight    399.339 
_chem_comp.id                6D8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              VT-464 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (1S)-1-[6,7-bis(difluoromethoxy)naphthalen-2-yl]-2-methyl-1-(2H-1,2,3-triazol-4-yl)propan-1-ol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F15 C13 6D8 sing 1 n n 
C13 F14 6D8 sing 2 n n 
C13 O12 6D8 sing 3 n n 
O12 C11 6D8 sing 4 n n 
C10 C11 6D8 doub 5 n y 
C10 C09 6D8 sing 6 n y 
C11 C16 6D8 sing 7 n y 
C08 C09 6D8 doub 8 n y 
C08 C07 6D8 sing 9 n y 
C09 C22 6D8 sing 10 n y 
O17 C16 6D8 sing 11 n n 
O17 C18 6D8 sing 12 n n 
C16 C21 6D8 doub 13 n y 
C07 C06 6D8 doub 14 n y 
C22 C21 6D8 sing 15 n y 
C22 C23 6D8 doub 16 n y 
F19 C18 6D8 sing 17 n n 
C18 F20 6D8 sing 18 n n 
C03 C02 6D8 sing 19 n n 
C06 C23 6D8 sing 20 n y 
C06 C04 6D8 sing 21 n n 
C02 C04 6D8 sing 22 n n 
C02 C01 6D8 sing 23 n n 
C04 C24 6D8 sing 24 n n 
C04 O05 6D8 sing 25 n n 
N28 C24 6D8 sing 26 n y 
N28 N27 6D8 doub 27 n y 
C24 C25 6D8 doub 28 n y 
N27 N26 6D8 sing 29 n y 
C25 N26 6D8 sing 30 n y 
C10 H101 6D8 sing 31 n n 
C13 H131 6D8 sing 32 n n 
C21 H211 6D8 sing 33 n n 
C01 H013 6D8 sing 34 n n 
C01 H011 6D8 sing 35 n n 
C01 H012 6D8 sing 36 n n 
C02 H021 6D8 sing 37 n n 
C03 H033 6D8 sing 38 n n 
C03 H031 6D8 sing 39 n n 
C03 H032 6D8 sing 40 n n 
O05 H051 6D8 sing 41 n n 
C07 H071 6D8 sing 42 n n 
C08 H081 6D8 sing 43 n n 
C18 H181 6D8 sing 44 n n 
C23 H231 6D8 sing 45 n n 
C25 H251 6D8 sing 46 n n 
N26 H261 6D8 sing 47 n n 
#
_atom_sites.entry_id                     5IRV 
_atom_sites.fract_transf_matrix[1][1]    0.010995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 600 600 HEM HEM . 
F 3 6D8 A 1 601 601 6D8 LIG . 
G 2 HEM B 1 600 600 HEM HEM . 
H 3 6D8 B 1 601 601 6D8 LIG . 
I 2 HEM C 1 600 600 HEM HEM . 
J 3 6D8 C 1 601 601 6D8 LIG . 
K 2 HEM D 1 600 600 HEM HEM . 
L 3 6D8 D 1 601 601 6D8 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 6D8 . . . J 3 53.928 -145.09 26.939 1 35.18 ? C10 6D8 601 C 1 
HETATM 2 C C13 6D8 . . . J 3 52.07 -145.225 29.258 1 48.51 ? C13 6D8 601 C 1 
HETATM 3 C C21 6D8 . . . J 3 52.484 -144.794 24.531 1 37.21 ? C21 6D8 601 C 1 
HETATM 4 C C22 6D8 . . . J 3 53.862 -144.424 24.592 1 33.75 ? C22 6D8 601 C 1 
HETATM 5 C C24 6D8 . . . J 3 57.523 -143.991 21.812 1 36.62 ? C24 6D8 601 C 1 
HETATM 6 C C01 6D8 . . . J 3 57.999 -141.217 21.013 1 36.69 ? C01 6D8 601 C 1 
HETATM 7 C C02 6D8 . . . J 3 57.168 -141.585 22.3 1 34.3 ? C02 6D8 601 C 1 
HETATM 8 C C03 6D8 . . . J 3 56.108 -140.486 22.562 1 33.35 ? C03 6D8 601 C 1 
HETATM 9 C C04 6D8 . . . J 3 56.5 -142.984 22.157 1 38.44 ? C04 6D8 601 C 1 
HETATM 10 O O05 6D8 . . . J 3 55.559 -142.883 21.143 1 40.53 ? O05 6D8 601 C 1 
HETATM 11 C C06 6D8 . . . J 3 55.828 -143.525 23.463 1 30.19 ? C06 6D8 601 C 1 
HETATM 12 C C07 6D8 . . . J 3 56.573 -143.679 24.665 1 28.62 ? C07 6D8 601 C 1 
HETATM 13 C C08 6D8 . . . J 3 55.962 -144.182 25.807 1 33.87 ? C08 6D8 601 C 1 
HETATM 14 C C09 6D8 . . . J 3 54.574 -144.563 25.763 1 35.82 ? C09 6D8 601 C 1 
HETATM 15 C C11 6D8 . . . J 3 52.578 -145.452 26.884 1 36.98 ? C11 6D8 601 C 1 
HETATM 16 O O12 6D8 . . . J 3 51.906 -145.989 28.041 1 35.02 ? O12 6D8 601 C 1 
HETATM 17 F F14 6D8 . . . J 3 51.981 -143.912 28.977 1 58.19 ? F14 6D8 601 C 1 
HETATM 18 F F15 6D8 . . . J 3 53.284 -145.47 29.805 1 54.77 ? F15 6D8 601 C 1 
HETATM 19 C C16 6D8 . . . J 3 51.854 -145.3 25.669 1 38.66 ? C16 6D8 601 C 1 
HETATM 20 O O17 6D8 . . . J 3 50.491 -145.67 25.614 1 45.92 ? O17 6D8 601 C 1 
HETATM 21 C C18 6D8 . . . J 3 50.28 -146.842 24.869 1 51.4 ? C18 6D8 601 C 1 
HETATM 22 F F19 6D8 . . . J 3 49.64 -146.549 23.737 1 53.29 ? F19 6D8 601 C 1 
HETATM 23 F F20 6D8 . . . J 3 49.528 -147.718 25.559 1 59.38 ? F20 6D8 601 C 1 
HETATM 24 C C23 6D8 . . . J 3 54.485 -143.908 23.428 1 35.04 ? C23 6D8 601 C 1 
HETATM 25 C C25 6D8 . . . J 3 57.321 -145.133 21 1 40.7 ? C25 6D8 601 C 1 
HETATM 26 N N26 6D8 . . . J 3 58.49 -145.796 20.931 1 45.06 ? N26 6D8 601 C 1 
HETATM 27 N N27 6D8 . . . J 3 59.415 -145.122 21.677 1 42.41 ? N27 6D8 601 C 1 
HETATM 28 N N28 6D8 . . . J 3 58.808 -144.015 22.217 1 39.23 ? N28 6D8 601 C 1 
HETATM 29 H H101 6D8 . . . J 3 54.418 -145.188 27.752 1 42.22 ? H101 6D8 601 C 1 
HETATM 30 H H131 6D8 . . . J 3 51.369 -145.47 29.896 1 58.22 ? H131 6D8 601 C 1 
HETATM 31 H H211 6D8 . . . J 3 51.982 -144.691 23.694 1 44.65 ? H211 6D8 601 C 1 
HETATM 32 H H013 6D8 . . . J 3 58.47 -140.372 21.159 1 44.03 ? H013 6D8 601 C 1 
HETATM 33 H H011 6D8 . . . J 3 58.652 -141.929 20.829 1 44.03 ? H011 6D8 601 C 1 
HETATM 34 H H012 6D8 . . . J 3 57.392 -141.125 20.248 1 44.03 ? H012 6D8 601 C 1 
HETATM 35 H H021 6D8 . . . J 3 57.783 -141.613 23.07 1 41.16 ? H021 6D8 601 C 1 
HETATM 36 H H033 6D8 . . . J 3 55.712 -140.614 23.472 1 40.02 ? H033 6D8 601 C 1 
HETATM 37 H H031 6D8 . . . J 3 56.533 -139.601 22.511 1 40.02 ? H031 6D8 601 C 1 
HETATM 38 H H032 6D8 . . . J 3 55.402 -140.548 21.888 1 40.02 ? H032 6D8 601 C 1 
HETATM 39 H H051 6D8 . . . J 3 55.217 -143.709 20.966 1 48.63 ? H051 6D8 601 C 1 
HETATM 40 H H071 6D8 . . . J 3 57.52 -143.42 24.69 1 34.35 ? H071 6D8 601 C 1 
HETATM 41 H H081 6D8 . . . J 3 56.479 -144.283 26.643 1 40.64 ? H081 6D8 601 C 1 
HETATM 42 H H181 6D8 . . . J 3 51.145 -147.251 24.657 1 61.68 ? H181 6D8 601 C 1 
HETATM 43 H H231 6D8 . . . J 3 53.97 -143.812 22.6 1 42.04 ? H231 6D8 601 C 1 
HETATM 44 H H251 6D8 . . . J 3 56.503 -145.383 20.569 1 48.84 ? H251 6D8 601 C 1 
HETATM 45 H H261 6D8 . . . J 3 58.638 -146.573 20.467 1 54.07 ? H261 6D8 601 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           45 
#