data_5IRW
#
_model_server_result.job_id            mRJSARoTjLWfIxSoKQRDNw 
_model_server_result.datetime_utc      '2024-11-15 16:54:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":201}' 
#
_entry.id    5IRW 
#
_exptl.entry_id    5IRW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRW 
_cell.length_a            58.97 
_cell.length_b            81.52 
_cell.length_c            107.78 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 4 C CYS 4 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
disulf ? disulf4 D SG CYS 4 D CYS 4 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 E C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 G C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale3 C ND2 ASN 17 C ASN 17 1_555 I C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
covale ? covale4 D ND2 ASN 17 D ASN 17 1_555 K C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 297 n n 
C1 O1 NAG sing 298 n n 
C1 O5 NAG sing 299 n n 
C1 H1 NAG sing 300 n n 
C2 C3 NAG sing 301 n n 
C2 N2 NAG sing 302 n n 
C2 H2 NAG sing 303 n n 
C3 C4 NAG sing 304 n n 
C3 O3 NAG sing 305 n n 
C3 H3 NAG sing 306 n n 
C4 C5 NAG sing 307 n n 
C4 O4 NAG sing 308 n n 
C4 H4 NAG sing 309 n n 
C5 C6 NAG sing 310 n n 
C5 O5 NAG sing 311 n n 
C5 H5 NAG sing 312 n n 
C6 O6 NAG sing 313 n n 
C6 H61 NAG sing 314 n n 
C6 H62 NAG sing 315 n n 
C7 C8 NAG sing 316 n n 
C7 N2 NAG sing 317 n n 
C7 O7 NAG doub 318 n n 
C8 H81 NAG sing 319 n n 
C8 H82 NAG sing 320 n n 
C8 H83 NAG sing 321 n n 
N2 HN2 NAG sing 322 n n 
O1 HO1 NAG sing 323 n n 
O3 HO3 NAG sing 324 n n 
O4 HO4 NAG sing 325 n n 
O6 HO6 NAG sing 326 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5IRW 
_atom_sites.fract_transf_matrix[1][1]    0.016958 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012267 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 201 1 NAG NAG . 
F 3 D9P A 1 202 3 D9P D9P . 
G 2 NAG B 1 201 2 NAG NAG . 
H 3 D9P B 1 202 2 D9P D9P . 
I 2 NAG C 1 201 3 NAG NAG . 
J 3 D9P C 1 202 1 D9P D9P . 
K 2 NAG D 1 201 4 NAG NAG . 
L 3 D9P D 1 202 4 D9P D9P . 
M 4 HOH A 1 301 114 HOH HOH . 
M 4 HOH A 2 302 37 HOH HOH . 
M 4 HOH A 3 303 58 HOH HOH . 
M 4 HOH A 4 304 89 HOH HOH . 
M 4 HOH A 5 305 6 HOH HOH . 
M 4 HOH A 6 306 13 HOH HOH . 
M 4 HOH A 7 307 15 HOH HOH . 
M 4 HOH A 8 308 65 HOH HOH . 
M 4 HOH A 9 309 49 HOH HOH . 
M 4 HOH A 10 310 5 HOH HOH . 
M 4 HOH A 11 311 44 HOH HOH . 
M 4 HOH A 12 312 94 HOH HOH . 
M 4 HOH A 13 313 81 HOH HOH . 
M 4 HOH A 14 314 18 HOH HOH . 
M 4 HOH A 15 315 74 HOH HOH . 
M 4 HOH A 16 316 76 HOH HOH . 
M 4 HOH A 17 317 23 HOH HOH . 
M 4 HOH A 18 318 35 HOH HOH . 
M 4 HOH A 19 319 14 HOH HOH . 
M 4 HOH A 20 320 33 HOH HOH . 
M 4 HOH A 21 321 95 HOH HOH . 
M 4 HOH A 22 322 53 HOH HOH . 
M 4 HOH A 23 323 36 HOH HOH . 
M 4 HOH A 24 324 73 HOH HOH . 
M 4 HOH A 25 325 47 HOH HOH . 
M 4 HOH A 26 326 41 HOH HOH . 
M 4 HOH A 27 327 50 HOH HOH . 
M 4 HOH A 28 328 115 HOH HOH . 
M 4 HOH A 29 329 34 HOH HOH . 
N 4 HOH B 1 301 112 HOH HOH . 
N 4 HOH B 2 302 82 HOH HOH . 
N 4 HOH B 3 303 10 HOH HOH . 
N 4 HOH B 4 304 91 HOH HOH . 
N 4 HOH B 5 305 100 HOH HOH . 
N 4 HOH B 6 306 87 HOH HOH . 
N 4 HOH B 7 307 113 HOH HOH . 
N 4 HOH B 8 308 8 HOH HOH . 
N 4 HOH B 9 309 70 HOH HOH . 
N 4 HOH B 10 310 55 HOH HOH . 
N 4 HOH B 11 311 24 HOH HOH . 
N 4 HOH B 12 312 20 HOH HOH . 
N 4 HOH B 13 313 30 HOH HOH . 
N 4 HOH B 14 314 84 HOH HOH . 
N 4 HOH B 15 315 63 HOH HOH . 
N 4 HOH B 16 316 12 HOH HOH . 
N 4 HOH B 17 317 2 HOH HOH . 
N 4 HOH B 18 318 69 HOH HOH . 
N 4 HOH B 19 319 46 HOH HOH . 
N 4 HOH B 20 320 83 HOH HOH . 
O 4 HOH C 1 301 72 HOH HOH . 
O 4 HOH C 2 302 96 HOH HOH . 
O 4 HOH C 3 303 54 HOH HOH . 
O 4 HOH C 4 304 109 HOH HOH . 
O 4 HOH C 5 305 19 HOH HOH . 
O 4 HOH C 6 306 59 HOH HOH . 
O 4 HOH C 7 307 108 HOH HOH . 
O 4 HOH C 8 308 90 HOH HOH . 
O 4 HOH C 9 309 27 HOH HOH . 
O 4 HOH C 10 310 80 HOH HOH . 
O 4 HOH C 11 311 78 HOH HOH . 
O 4 HOH C 12 312 17 HOH HOH . 
O 4 HOH C 13 313 51 HOH HOH . 
O 4 HOH C 14 314 88 HOH HOH . 
O 4 HOH C 15 315 3 HOH HOH . 
O 4 HOH C 16 316 28 HOH HOH . 
O 4 HOH C 17 317 71 HOH HOH . 
O 4 HOH C 18 318 66 HOH HOH . 
O 4 HOH C 19 319 56 HOH HOH . 
O 4 HOH C 20 320 45 HOH HOH . 
O 4 HOH C 21 321 64 HOH HOH . 
O 4 HOH C 22 322 29 HOH HOH . 
O 4 HOH C 23 323 77 HOH HOH . 
O 4 HOH C 24 324 104 HOH HOH . 
O 4 HOH C 25 325 42 HOH HOH . 
O 4 HOH C 26 326 98 HOH HOH . 
O 4 HOH C 27 327 97 HOH HOH . 
O 4 HOH C 28 328 67 HOH HOH . 
O 4 HOH C 29 329 52 HOH HOH . 
P 4 HOH D 1 301 25 HOH HOH . 
P 4 HOH D 2 302 103 HOH HOH . 
P 4 HOH D 3 303 4 HOH HOH . 
P 4 HOH D 4 304 62 HOH HOH . 
P 4 HOH D 5 305 86 HOH HOH . 
P 4 HOH D 6 306 48 HOH HOH . 
P 4 HOH D 7 307 92 HOH HOH . 
P 4 HOH D 8 308 7 HOH HOH . 
P 4 HOH D 9 309 57 HOH HOH . 
P 4 HOH D 10 310 106 HOH HOH . 
P 4 HOH D 11 311 39 HOH HOH . 
P 4 HOH D 12 312 107 HOH HOH . 
P 4 HOH D 13 313 79 HOH HOH . 
P 4 HOH D 14 314 38 HOH HOH . 
P 4 HOH D 15 315 61 HOH HOH . 
P 4 HOH D 16 316 11 HOH HOH . 
P 4 HOH D 17 317 68 HOH HOH . 
P 4 HOH D 18 318 21 HOH HOH . 
P 4 HOH D 19 319 101 HOH HOH . 
P 4 HOH D 20 320 32 HOH HOH . 
P 4 HOH D 21 321 60 HOH HOH . 
P 4 HOH D 22 322 31 HOH HOH . 
P 4 HOH D 23 323 102 HOH HOH . 
P 4 HOH D 24 324 75 HOH HOH . 
P 4 HOH D 25 325 9 HOH HOH . 
P 4 HOH D 26 326 43 HOH HOH . 
P 4 HOH D 27 327 22 HOH HOH . 
P 4 HOH D 28 328 105 HOH HOH . 
P 4 HOH D 29 329 85 HOH HOH . 
P 4 HOH D 30 330 16 HOH HOH . 
P 4 HOH D 31 331 40 HOH HOH . 
P 4 HOH D 32 332 26 HOH HOH . 
P 4 HOH D 33 333 1 HOH HOH . 
P 4 HOH D 34 334 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 2 2.903 3.382 34.01 1 70.65 ? C1 NAG 201 C 1 
HETATM 2 C C2 NAG . . . I 2 2.932 1.892 34.403 1 69.52 ? C2 NAG 201 C 1 
HETATM 3 C C3 NAG . . . I 2 1.652 1.175 33.945 1 68.27 ? C3 NAG 201 C 1 
HETATM 4 C C4 NAG . . . I 2 0.45 1.861 34.556 1 74.41 ? C4 NAG 201 C 1 
HETATM 5 C C5 NAG . . . I 2 0.478 3.278 33.967 1 76.65 ? C5 NAG 201 C 1 
HETATM 6 C C6 NAG . . . I 2 -0.747 4.105 34.351 1 78.2 ? C6 NAG 201 C 1 
HETATM 7 C C7 NAG . . . I 2 5.098 0.71 34.499 1 67.7 ? C7 NAG 201 C 1 
HETATM 8 C C8 NAG . . . I 2 6.1 -0.054 33.674 1 68.46 ? C8 NAG 201 C 1 
HETATM 9 N N2 NAG . . . I 2 4.063 1.166 33.81 1 64.43 ? N2 NAG 201 C 1 
HETATM 10 O O3 NAG . . . I 2 1.721 -0.237 34.276 1 68.53 ? O3 NAG 201 C 1 
HETATM 11 O O4 NAG . . . I 2 -0.823 1.208 34.267 1 85.9 ? O4 NAG 201 C 1 
HETATM 12 O O5 NAG . . . I 2 1.679 3.99 34.455 1 76.83 ? O5 NAG 201 C 1 
HETATM 13 O O6 NAG . . . I 2 -0.527 4.606 35.673 1 75.99 ? O6 NAG 201 C 1 
HETATM 14 O O7 NAG . . . I 2 5.242 0.917 35.692 1 73.48 ? O7 NAG 201 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           1007 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#