data_5IRW # _model_server_result.job_id jTXOL51xfTIuhWt6tPIBiQ _model_server_result.datetime_utc '2024-11-15 16:20:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5irw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 5IRW # _exptl.entry_id 5IRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IRW _cell.length_a 58.97 _cell.length_b 81.52 _cell.length_c 107.78 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 C SG CYS 4 C CYS 4 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf4 D SG CYS 4 D CYS 4 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 E C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 G C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 C ND2 ASN 17 C ASN 17 1_555 I C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale4 D ND2 ASN 17 D ASN 17 1_555 K C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 297 n n C1 O1 NAG sing 298 n n C1 O5 NAG sing 299 n n C1 H1 NAG sing 300 n n C2 C3 NAG sing 301 n n C2 N2 NAG sing 302 n n C2 H2 NAG sing 303 n n C3 C4 NAG sing 304 n n C3 O3 NAG sing 305 n n C3 H3 NAG sing 306 n n C4 C5 NAG sing 307 n n C4 O4 NAG sing 308 n n C4 H4 NAG sing 309 n n C5 C6 NAG sing 310 n n C5 O5 NAG sing 311 n n C5 H5 NAG sing 312 n n C6 O6 NAG sing 313 n n C6 H61 NAG sing 314 n n C6 H62 NAG sing 315 n n C7 C8 NAG sing 316 n n C7 N2 NAG sing 317 n n C7 O7 NAG doub 318 n n C8 H81 NAG sing 319 n n C8 H82 NAG sing 320 n n C8 H83 NAG sing 321 n n N2 HN2 NAG sing 322 n n O1 HO1 NAG sing 323 n n O3 HO3 NAG sing 324 n n O4 HO4 NAG sing 325 n n O6 HO6 NAG sing 326 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5IRW _atom_sites.fract_transf_matrix[1][1] 0.016958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 201 1 NAG NAG . F 3 D9P A 1 202 3 D9P D9P . G 2 NAG B 1 201 2 NAG NAG . H 3 D9P B 1 202 2 D9P D9P . I 2 NAG C 1 201 3 NAG NAG . J 3 D9P C 1 202 1 D9P D9P . K 2 NAG D 1 201 4 NAG NAG . L 3 D9P D 1 202 4 D9P D9P . M 4 HOH A 1 301 114 HOH HOH . M 4 HOH A 2 302 37 HOH HOH . M 4 HOH A 3 303 58 HOH HOH . M 4 HOH A 4 304 89 HOH HOH . M 4 HOH A 5 305 6 HOH HOH . M 4 HOH A 6 306 13 HOH HOH . M 4 HOH A 7 307 15 HOH HOH . M 4 HOH A 8 308 65 HOH HOH . M 4 HOH A 9 309 49 HOH HOH . M 4 HOH A 10 310 5 HOH HOH . M 4 HOH A 11 311 44 HOH HOH . M 4 HOH A 12 312 94 HOH HOH . M 4 HOH A 13 313 81 HOH HOH . M 4 HOH A 14 314 18 HOH HOH . M 4 HOH A 15 315 74 HOH HOH . M 4 HOH A 16 316 76 HOH HOH . M 4 HOH A 17 317 23 HOH HOH . M 4 HOH A 18 318 35 HOH HOH . M 4 HOH A 19 319 14 HOH HOH . M 4 HOH A 20 320 33 HOH HOH . M 4 HOH A 21 321 95 HOH HOH . M 4 HOH A 22 322 53 HOH HOH . M 4 HOH A 23 323 36 HOH HOH . M 4 HOH A 24 324 73 HOH HOH . M 4 HOH A 25 325 47 HOH HOH . M 4 HOH A 26 326 41 HOH HOH . M 4 HOH A 27 327 50 HOH HOH . M 4 HOH A 28 328 115 HOH HOH . M 4 HOH A 29 329 34 HOH HOH . N 4 HOH B 1 301 112 HOH HOH . N 4 HOH B 2 302 82 HOH HOH . N 4 HOH B 3 303 10 HOH HOH . N 4 HOH B 4 304 91 HOH HOH . N 4 HOH B 5 305 100 HOH HOH . N 4 HOH B 6 306 87 HOH HOH . N 4 HOH B 7 307 113 HOH HOH . N 4 HOH B 8 308 8 HOH HOH . N 4 HOH B 9 309 70 HOH HOH . N 4 HOH B 10 310 55 HOH HOH . N 4 HOH B 11 311 24 HOH HOH . N 4 HOH B 12 312 20 HOH HOH . N 4 HOH B 13 313 30 HOH HOH . N 4 HOH B 14 314 84 HOH HOH . N 4 HOH B 15 315 63 HOH HOH . N 4 HOH B 16 316 12 HOH HOH . N 4 HOH B 17 317 2 HOH HOH . N 4 HOH B 18 318 69 HOH HOH . N 4 HOH B 19 319 46 HOH HOH . N 4 HOH B 20 320 83 HOH HOH . O 4 HOH C 1 301 72 HOH HOH . O 4 HOH C 2 302 96 HOH HOH . O 4 HOH C 3 303 54 HOH HOH . O 4 HOH C 4 304 109 HOH HOH . O 4 HOH C 5 305 19 HOH HOH . O 4 HOH C 6 306 59 HOH HOH . O 4 HOH C 7 307 108 HOH HOH . O 4 HOH C 8 308 90 HOH HOH . O 4 HOH C 9 309 27 HOH HOH . O 4 HOH C 10 310 80 HOH HOH . O 4 HOH C 11 311 78 HOH HOH . O 4 HOH C 12 312 17 HOH HOH . O 4 HOH C 13 313 51 HOH HOH . O 4 HOH C 14 314 88 HOH HOH . O 4 HOH C 15 315 3 HOH HOH . O 4 HOH C 16 316 28 HOH HOH . O 4 HOH C 17 317 71 HOH HOH . O 4 HOH C 18 318 66 HOH HOH . O 4 HOH C 19 319 56 HOH HOH . O 4 HOH C 20 320 45 HOH HOH . O 4 HOH C 21 321 64 HOH HOH . O 4 HOH C 22 322 29 HOH HOH . O 4 HOH C 23 323 77 HOH HOH . O 4 HOH C 24 324 104 HOH HOH . O 4 HOH C 25 325 42 HOH HOH . O 4 HOH C 26 326 98 HOH HOH . O 4 HOH C 27 327 97 HOH HOH . O 4 HOH C 28 328 67 HOH HOH . O 4 HOH C 29 329 52 HOH HOH . P 4 HOH D 1 301 25 HOH HOH . P 4 HOH D 2 302 103 HOH HOH . P 4 HOH D 3 303 4 HOH HOH . P 4 HOH D 4 304 62 HOH HOH . P 4 HOH D 5 305 86 HOH HOH . P 4 HOH D 6 306 48 HOH HOH . P 4 HOH D 7 307 92 HOH HOH . P 4 HOH D 8 308 7 HOH HOH . P 4 HOH D 9 309 57 HOH HOH . P 4 HOH D 10 310 106 HOH HOH . P 4 HOH D 11 311 39 HOH HOH . P 4 HOH D 12 312 107 HOH HOH . P 4 HOH D 13 313 79 HOH HOH . P 4 HOH D 14 314 38 HOH HOH . P 4 HOH D 15 315 61 HOH HOH . P 4 HOH D 16 316 11 HOH HOH . P 4 HOH D 17 317 68 HOH HOH . P 4 HOH D 18 318 21 HOH HOH . P 4 HOH D 19 319 101 HOH HOH . P 4 HOH D 20 320 32 HOH HOH . P 4 HOH D 21 321 60 HOH HOH . P 4 HOH D 22 322 31 HOH HOH . P 4 HOH D 23 323 102 HOH HOH . P 4 HOH D 24 324 75 HOH HOH . P 4 HOH D 25 325 9 HOH HOH . P 4 HOH D 26 326 43 HOH HOH . P 4 HOH D 27 327 22 HOH HOH . P 4 HOH D 28 328 105 HOH HOH . P 4 HOH D 29 329 85 HOH HOH . P 4 HOH D 30 330 16 HOH HOH . P 4 HOH D 31 331 40 HOH HOH . P 4 HOH D 32 332 26 HOH HOH . P 4 HOH D 33 333 1 HOH HOH . P 4 HOH D 34 334 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 2 42.739 21.003 25.123 1 54.33 ? C1 NAG 201 D 1 HETATM 2 C C2 NAG . . . K 2 42.703 22.292 24.269 1 59.24 ? C2 NAG 201 D 1 HETATM 3 C C3 NAG . . . K 2 44.098 22.559 23.647 1 68.47 ? C3 NAG 201 D 1 HETATM 4 C C4 NAG . . . K 2 45.205 22.62 24.72 1 68.54 ? C4 NAG 201 D 1 HETATM 5 C C5 NAG . . . K 2 45.117 21.297 25.492 1 67.4 ? C5 NAG 201 D 1 HETATM 6 C C6 NAG . . . K 2 46.185 21.147 26.586 1 68.53 ? C6 NAG 201 D 1 HETATM 7 C C7 NAG . . . K 2 40.558 22.989 23.285 1 55.79 ? C7 NAG 201 D 1 HETATM 8 C C8 NAG . . . K 2 39.565 22.857 22.184 1 53.03 ? C8 NAG 201 D 1 HETATM 9 N N2 NAG . . . K 2 41.661 22.253 23.243 1 52.71 ? N2 NAG 201 D 1 HETATM 10 O O3 NAG . . . K 2 44.046 23.804 22.933 1 72.31 ? O3 NAG 201 D 1 HETATM 11 O O4 NAG . . . K 2 46.559 22.814 24.187 1 78.49 ? O4 NAG 201 D 1 HETATM 12 O O5 NAG . . . K 2 43.784 21.096 26.108 1 58.24 ? O5 NAG 201 D 1 HETATM 13 O O6 NAG . . . K 2 45.87 21.894 27.772 1 61.91 ? O6 NAG 201 D 1 HETATM 14 O O7 NAG . . . K 2 40.328 23.762 24.178 1 63.32 ? O7 NAG 201 D 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 464 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #