data_5IRX
#
_model_server_result.job_id            bua3YkGMNjqfhswYpaZrzQ 
_model_server_result.datetime_utc      '2024-11-04 22:34:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":101}' 
#
_entry.id    5IRX 
#
_exptl.entry_id    5IRX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              341.295 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-(acetyloxy)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}propyl pentanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 R N N 
? 6 V N N 
? 6 X N N 
? 6 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C12 H24 N O8 P' 
_chem_comp.formula_weight    341.295 
_chem_comp.id                6O9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-(acetyloxy)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}propyl pentanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5IRX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 6O8 A 1 801 19 6O8 LPA . 
H 4 6OE A 1 802 27 6OE LPC . 
I 4 6OE A 1 803 31 6OE LPC . 
J 5 6EU A 1 804 4 6EU 6EU . 
K 3 6O8 B 1 801 20 6O8 LPA . 
L 4 6OE B 1 802 30 6OE LPC . 
M 5 6EU B 1 803 2 6EU 6EU . 
N 3 6O8 C 1 801 18 6O8 LPA . 
O 4 6OE C 1 802 33 6OE LPC . 
P 5 6EU C 1 803 3 6EU 6EU . 
Q 3 6O8 D 1 801 21 6O8 LPA . 
R 6 6O9 D 1 802 24 6O9 LPB . 
S 4 6OE D 1 803 28 6OE LPC . 
T 4 6OE D 1 804 32 6OE LPC . 
U 5 6EU D 1 805 1 6EU 6EU . 
V 6 6O9 E 1 101 25 6O9 LPB . 
W 4 6OE E 1 102 29 6OE LPC . 
X 6 6O9 F 1 101 22 6O9 LPB . 
Y 6 6O9 F 1 102 23 6O9 LPB . 
Z 4 6OE F 1 103 26 6OE LPC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 6O9 . . . X 6 101.523 146.743 157.086 1 20 ? N01 6O9 101 F 1 
HETATM 2 C C02 6O9 . . . X 6 100.845 147.95 156.675 1 20 ? C02 6O9 101 F 1 
HETATM 3 C C03 6O9 . . . X 6 100.177 147.709 155.329 1 20 ? C03 6O9 101 F 1 
HETATM 4 O O04 6O9 . . . X 6 100.276 148.869 154.558 1 20 ? O04 6O9 101 F 1 
HETATM 5 P P05 6O9 . . . X 6 101.757 149.248 153.954 1 20 ? P05 6O9 101 F 1 
HETATM 6 O O06 6O9 . . . X 6 102.775 148.318 154.565 1 20 ? O06 6O9 101 F 1 
HETATM 7 O O07 6O9 . . . X 6 102.103 150.677 154.293 1 20 ? O07 6O9 101 F 1 
HETATM 8 O O08 6O9 . . . X 6 101.736 149.044 152.321 1 20 ? O08 6O9 101 F 1 
HETATM 9 C C09 6O9 . . . X 6 102.847 148.462 151.706 1 20 ? C09 6O9 101 F 1 
HETATM 10 C C10 6O9 . . . X 6 102.411 147.169 151.029 1 20 ? C10 6O9 101 F 1 
HETATM 11 C C11 6O9 . . . X 6 103.414 146.706 149.977 1 20 ? C11 6O9 101 F 1 
HETATM 12 O O12 6O9 . . . X 6 102.727 146.054 148.953 1 20 ? O12 6O9 101 F 1 
HETATM 13 C C13 6O9 . . . X 6 103.466 145.902 147.778 1 20 ? C13 6O9 101 F 1 
HETATM 14 C C14 6O9 . . . X 6 102.806 145.269 146.562 1 20 ? C14 6O9 101 F 1 
HETATM 15 C C15 6O9 . . . X 6 103.57 145.476 145.262 1 20 ? C15 6O9 101 F 1 
HETATM 16 C C16 6O9 . . . X 6 103.141 144.473 144.201 1 20 ? C16 6O9 101 F 1 
HETATM 17 C C17 6O9 . . . X 6 103.66 144.783 142.803 1 20 ? C17 6O9 101 F 1 
HETATM 18 O O18 6O9 . . . X 6 104.59 146.26 147.727 1 20 ? O18 6O9 101 F 1 
HETATM 19 O O19 6O9 . . . X 6 101.181 147.393 150.402 1 20 ? O19 6O9 101 F 1 
HETATM 20 C C20 6O9 . . . X 6 100.053 147.079 151.172 1 20 ? C20 6O9 101 F 1 
HETATM 21 C C21 6O9 . . . X 6 98.726 146.739 150.488 1 20 ? C21 6O9 101 F 1 
HETATM 22 O O22 6O9 . . . X 6 100.121 147.08 152.355 1 20 ? O22 6O9 101 F 1 
HETATM 23 H H012 6O9 . . . X 6 102.068 146.483 156.434 1 20 ? H012 6O9 101 F 1 
HETATM 24 H H011 6O9 . . . X 6 100.919 146.108 157.236 1 20 ? H011 6O9 101 F 1 
HETATM 25 H H022 6O9 . . . X 6 101.487 148.669 156.601 1 20 ? H022 6O9 101 F 1 
HETATM 26 H H021 6O9 . . . X 6 100.171 148.18 157.329 1 20 ? H021 6O9 101 F 1 
HETATM 27 H H032 6O9 . . . X 6 100.628 146.984 154.877 1 20 ? H032 6O9 101 F 1 
HETATM 28 H H031 6O9 . . . X 6 99.245 147.482 155.466 1 20 ? H031 6O9 101 F 1 
HETATM 29 H H092 6O9 . . . X 6 103.203 149.069 151.041 1 20 ? H092 6O9 101 F 1 
HETATM 30 H H091 6O9 . . . X 6 103.526 148.267 152.367 1 20 ? H091 6O9 101 F 1 
HETATM 31 H H101 6O9 . . . X 6 102.311 146.479 151.698 1 20 ? H101 6O9 101 F 1 
HETATM 32 H H111 6O9 . . . X 6 103.879 147.473 149.62 1 20 ? H111 6O9 101 F 1 
HETATM 33 H H112 6O9 . . . X 6 104.05 146.099 150.376 1 20 ? H112 6O9 101 F 1 
HETATM 34 H H141 6O9 . . . X 6 101.926 145.651 146.464 1 20 ? H141 6O9 101 F 1 
HETATM 35 H H142 6O9 . . . X 6 102.719 144.319 146.718 1 20 ? H142 6O9 101 F 1 
HETATM 36 H H152 6O9 . . . X 6 103.398 146.368 144.937 1 20 ? H152 6O9 101 F 1 
HETATM 37 H H151 6O9 . . . X 6 104.515 145.374 145.432 1 20 ? H151 6O9 101 F 1 
HETATM 38 H H161 6O9 . . . X 6 102.175 144.454 144.176 1 20 ? H161 6O9 101 F 1 
HETATM 39 H H162 6O9 . . . X 6 103.465 143.601 144.459 1 20 ? H162 6O9 101 F 1 
HETATM 40 H H173 6O9 . . . X 6 103.047 145.382 142.355 1 20 ? H173 6O9 101 F 1 
HETATM 41 H H172 6O9 . . . X 6 104.53 145.197 142.869 1 20 ? H172 6O9 101 F 1 
HETATM 42 H H213 6O9 . . . X 6 98.288 147.556 150.205 1 20 ? H213 6O9 101 F 1 
HETATM 43 H H212 6O9 . . . X 6 98.151 146.268 151.111 1 20 ? H212 6O9 101 F 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#