data_5IRX # _model_server_result.job_id n3NjA4lWjrVbK4fu6GFZyQ _model_server_result.datetime_utc '2024-11-04 22:32:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5irx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 5IRX # _exptl.entry_id 5IRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 440.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 N N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C19 H39 N O8 P 1' _chem_comp.formula_weight 440.489 _chem_comp.id 6O8 _chem_comp.mon_nstd_flag . _chem_comp.name (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 6O8 A 1 801 19 6O8 LPA . H 4 6OE A 1 802 27 6OE LPC . I 4 6OE A 1 803 31 6OE LPC . J 5 6EU A 1 804 4 6EU 6EU . K 3 6O8 B 1 801 20 6O8 LPA . L 4 6OE B 1 802 30 6OE LPC . M 5 6EU B 1 803 2 6EU 6EU . N 3 6O8 C 1 801 18 6O8 LPA . O 4 6OE C 1 802 33 6OE LPC . P 5 6EU C 1 803 3 6EU 6EU . Q 3 6O8 D 1 801 21 6O8 LPA . R 6 6O9 D 1 802 24 6O9 LPB . S 4 6OE D 1 803 28 6OE LPC . T 4 6OE D 1 804 32 6OE LPC . U 5 6EU D 1 805 1 6EU 6EU . V 6 6O9 E 1 101 25 6O9 LPB . W 4 6OE E 1 102 29 6OE LPC . X 6 6O9 F 1 101 22 6O9 LPB . Y 6 6O9 F 1 102 23 6O9 LPB . Z 4 6OE F 1 103 26 6OE LPC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 6O8 . . . G 3 72.124 125.928 127.956 1 20 ? C01 6O8 801 A 1 HETATM 2 C C02 6O8 . . . G 3 73.119 127.027 127.589 1 20 ? C02 6O8 801 A 1 HETATM 3 C C03 6O8 . . . G 3 74.332 126.515 126.827 1 20 ? C03 6O8 801 A 1 HETATM 4 C C04 6O8 . . . G 3 75.126 127.652 126.213 1 20 ? C04 6O8 801 A 1 HETATM 5 C C05 6O8 . . . G 3 76.261 127.157 125.342 1 20 ? C05 6O8 801 A 1 HETATM 6 O O06 6O8 . . . G 3 76.593 127.78 124.397 1 20 ? O06 6O8 801 A 1 HETATM 7 O O07 6O8 . . . G 3 76.918 125.976 125.67 1 20 ? O07 6O8 801 A 1 HETATM 8 C C08 6O8 . . . G 3 77.671 126.129 126.827 1 20 ? C08 6O8 801 A 1 HETATM 9 C C09 6O8 . . . G 3 78.98 125.396 126.647 1 20 ? C09 6O8 801 A 1 HETATM 10 C C10 6O8 . . . G 3 79.638 125.88 125.389 1 20 ? C10 6O8 801 A 1 HETATM 11 O O11 6O8 . . . G 3 80.624 124.975 125.036 1 20 ? O11 6O8 801 A 1 HETATM 12 P P12 6O8 . . . G 3 80.064 123.67 124.242 1 20 ? P12 6O8 801 A 1 HETATM 13 O O13 6O8 . . . G 3 78.57 123.734 124.127 1 20 ? O13 6O8 801 A 1 HETATM 14 O O14 6O8 . . . G 3 80.692 123.598 122.88 1 20 ? O14 6O8 801 A 1 HETATM 15 O O15 6O8 . . . G 3 80.471 122.364 125.108 1 20 ? O15 6O8 801 A 1 HETATM 16 C C16 6O8 . . . G 3 81.61 121.783 124.609 1 20 ? C16 6O8 801 A 1 HETATM 17 C C17 6O8 . . . G 3 81.127 120.701 123.689 1 20 ? C17 6O8 801 A 1 HETATM 18 N N18 6O8 . . . G 3 82.185 119.848 123.274 1 20 ? N18 6O8 801 A 1 HETATM 19 C C19 6O8 . . . G 3 82.74 119.181 124.389 1 20 ? C19 6O8 801 A 1 HETATM 20 C C20 6O8 . . . G 3 83.197 120.586 122.606 1 20 ? C20 6O8 801 A 1 HETATM 21 C C21 6O8 . . . G 3 81.68 118.833 122.423 1 20 ? C21 6O8 801 A 1 HETATM 22 O O22 6O8 . . . G 3 79.777 125.716 127.738 1 20 ? O22 6O8 801 A 1 HETATM 23 C C23 6O8 . . . G 3 79.252 125.213 128.924 1 20 ? C23 6O8 801 A 1 HETATM 24 O O24 6O8 . . . G 3 79.312 124.075 129.171 1 20 ? O24 6O8 801 A 1 HETATM 25 C C25 6O8 . . . G 3 78.542 126.105 129.909 1 20 ? C25 6O8 801 A 1 HETATM 26 C C26 6O8 . . . G 3 77.52 125.348 130.73 1 20 ? C26 6O8 801 A 1 HETATM 27 C C27 6O8 . . . G 3 76.792 126.259 131.703 1 20 ? C27 6O8 801 A 1 HETATM 28 C C28 6O8 . . . G 3 75.417 125.718 132.071 1 20 ? C28 6O8 801 A 1 HETATM 29 C C29 6O8 . . . G 3 74.54 126.749 132.766 1 20 ? C29 6O8 801 A 1 HETATM 30 H H011 6O8 . . . G 3 71.931 125.391 127.173 1 20 ? H011 6O8 801 A 1 HETATM 31 H H012 6O8 . . . G 3 72.503 125.367 128.647 1 20 ? H012 6O8 801 A 1 HETATM 32 H H022 6O8 . . . G 3 72.67 127.672 127.029 1 20 ? H022 6O8 801 A 1 HETATM 33 H H021 6O8 . . . G 3 73.422 127.471 128.392 1 20 ? H021 6O8 801 A 1 HETATM 34 H H031 6O8 . . . G 3 74.04 125.927 126.12 1 20 ? H031 6O8 801 A 1 HETATM 35 H H032 6O8 . . . G 3 74.909 126.03 127.425 1 20 ? H032 6O8 801 A 1 HETATM 36 H H041 6O8 . . . G 3 74.537 128.193 125.675 1 20 ? H041 6O8 801 A 1 HETATM 37 H H042 6O8 . . . G 3 75.488 128.189 126.926 1 20 ? H042 6O8 801 A 1 HETATM 38 H H081 6O8 . . . G 3 77.853 127.067 126.965 1 20 ? H081 6O8 801 A 1 HETATM 39 H H082 6O8 . . . G 3 77.184 125.774 127.575 1 20 ? H082 6O8 801 A 1 HETATM 40 H H091 6O8 . . . G 3 78.852 124.444 126.594 1 20 ? H091 6O8 801 A 1 HETATM 41 H H102 6O8 . . . G 3 78.979 125.92 124.691 1 20 ? H102 6O8 801 A 1 HETATM 42 H H101 6O8 . . . G 3 80.006 126.754 125.533 1 20 ? H101 6O8 801 A 1 HETATM 43 H H162 6O8 . . . G 3 82.1 122.438 124.108 1 20 ? H162 6O8 801 A 1 HETATM 44 H H161 6O8 . . . G 3 82.138 121.421 125.319 1 20 ? H161 6O8 801 A 1 HETATM 45 H H171 6O8 . . . G 3 80.733 121.121 122.922 1 20 ? H171 6O8 801 A 1 HETATM 46 H H172 6O8 . . . G 3 80.478 120.168 124.148 1 20 ? H172 6O8 801 A 1 HETATM 47 H H193 6O8 . . . G 3 83.256 118.439 124.059 1 20 ? H193 6O8 801 A 1 HETATM 48 H H191 6O8 . . . G 3 83.294 119.788 124.883 1 20 ? H191 6O8 801 A 1 HETATM 49 H H192 6O8 . . . G 3 82.011 118.875 124.935 1 20 ? H192 6O8 801 A 1 HETATM 50 H H202 6O8 . . . G 3 82.773 121.218 122.019 1 20 ? H202 6O8 801 A 1 HETATM 51 H H203 6O8 . . . G 3 83.757 119.987 122.105 1 20 ? H203 6O8 801 A 1 HETATM 52 H H201 6O8 . . . G 3 83.719 121.052 123.261 1 20 ? H201 6O8 801 A 1 HETATM 53 H H213 6O8 . . . G 3 81.193 119.249 121.704 1 20 ? H213 6O8 801 A 1 HETATM 54 H H212 6O8 . . . G 3 82.418 118.317 122.08 1 20 ? H212 6O8 801 A 1 HETATM 55 H H211 6O8 . . . G 3 81.097 118.272 122.946 1 20 ? H211 6O8 801 A 1 HETATM 56 H H252 6O8 . . . G 3 78.104 126.806 129.416 1 20 ? H252 6O8 801 A 1 HETATM 57 H H251 6O8 . . . G 3 79.188 126.482 130.508 1 20 ? H251 6O8 801 A 1 HETATM 58 H H262 6O8 . . . G 3 76.882 124.934 130.142 1 20 ? H262 6O8 801 A 1 HETATM 59 H H261 6O8 . . . G 3 77.972 124.66 131.224 1 20 ? H261 6O8 801 A 1 HETATM 60 H H272 6O8 . . . G 3 76.694 127.13 131.308 1 20 ? H272 6O8 801 A 1 HETATM 61 H H271 6O8 . . . G 3 77.32 126.351 132.504 1 20 ? H271 6O8 801 A 1 HETATM 62 H H281 6O8 . . . G 3 74.971 125.423 131.267 1 20 ? H281 6O8 801 A 1 HETATM 63 H H282 6O8 . . . G 3 75.53 124.964 132.663 1 20 ? H282 6O8 801 A 1 HETATM 64 H H291 6O8 . . . G 3 74.319 127.46 132.148 1 20 ? H291 6O8 801 A 1 HETATM 65 H H292 6O8 . . . G 3 75.022 127.123 133.516 1 20 ? H292 6O8 801 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 65 #