data_5IRX
#
_model_server_result.job_id            Hp7YjJzHqPLVP2ZbbD3Obw 
_model_server_result.datetime_utc      '2024-11-04 22:35:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":801}' 
#
_entry.id    5IRX 
#
_exptl.entry_id    5IRX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              440.489 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 K N N 
? 3 N N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C19 H39 N O8 P 1' 
_chem_comp.formula_weight    440.489 
_chem_comp.id                6O8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5IRX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 6O8 A 1 801 19 6O8 LPA . 
H 4 6OE A 1 802 27 6OE LPC . 
I 4 6OE A 1 803 31 6OE LPC . 
J 5 6EU A 1 804 4 6EU 6EU . 
K 3 6O8 B 1 801 20 6O8 LPA . 
L 4 6OE B 1 802 30 6OE LPC . 
M 5 6EU B 1 803 2 6EU 6EU . 
N 3 6O8 C 1 801 18 6O8 LPA . 
O 4 6OE C 1 802 33 6OE LPC . 
P 5 6EU C 1 803 3 6EU 6EU . 
Q 3 6O8 D 1 801 21 6O8 LPA . 
R 6 6O9 D 1 802 24 6O9 LPB . 
S 4 6OE D 1 803 28 6OE LPC . 
T 4 6OE D 1 804 32 6OE LPC . 
U 5 6EU D 1 805 1 6EU 6EU . 
V 6 6O9 E 1 101 25 6O9 LPB . 
W 4 6OE E 1 102 29 6OE LPC . 
X 6 6O9 F 1 101 22 6O9 LPB . 
Y 6 6O9 F 1 102 23 6O9 LPB . 
Z 4 6OE F 1 103 26 6OE LPC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 6O8 . . . Q 3 161.301 107.463 127.968 1 20 ? C01 6O8 801 D 1 
HETATM 2 C C02 6O8 . . . Q 3 160.305 106.364 127.602 1 20 ? C02 6O8 801 D 1 
HETATM 3 C C03 6O8 . . . Q 3 159.092 106.876 126.839 1 20 ? C03 6O8 801 D 1 
HETATM 4 C C04 6O8 . . . Q 3 158.298 105.739 126.227 1 20 ? C04 6O8 801 D 1 
HETATM 5 C C05 6O8 . . . Q 3 157.163 106.233 125.354 1 20 ? C05 6O8 801 D 1 
HETATM 6 O O06 6O8 . . . Q 3 156.831 105.609 124.41 1 20 ? O06 6O8 801 D 1 
HETATM 7 O O07 6O8 . . . Q 3 156.506 107.415 125.682 1 20 ? O07 6O8 801 D 1 
HETATM 8 C C08 6O8 . . . Q 3 155.753 107.262 126.839 1 20 ? C08 6O8 801 D 1 
HETATM 9 C C09 6O8 . . . Q 3 154.444 107.995 126.658 1 20 ? C09 6O8 801 D 1 
HETATM 10 C C10 6O8 . . . Q 3 153.787 107.51 125.4 1 20 ? C10 6O8 801 D 1 
HETATM 11 O O11 6O8 . . . Q 3 152.801 108.415 125.047 1 20 ? O11 6O8 801 D 1 
HETATM 12 P P12 6O8 . . . Q 3 153.361 109.719 124.251 1 20 ? P12 6O8 801 D 1 
HETATM 13 O O13 6O8 . . . Q 3 154.855 109.656 124.137 1 20 ? O13 6O8 801 D 1 
HETATM 14 O O14 6O8 . . . Q 3 152.733 109.79 122.888 1 20 ? O14 6O8 801 D 1 
HETATM 15 O O15 6O8 . . . Q 3 152.954 111.026 125.116 1 20 ? O15 6O8 801 D 1 
HETATM 16 C C16 6O8 . . . Q 3 151.815 111.606 124.617 1 20 ? C16 6O8 801 D 1 
HETATM 17 C C17 6O8 . . . Q 3 152.298 112.688 123.697 1 20 ? C17 6O8 801 D 1 
HETATM 18 N N18 6O8 . . . Q 3 151.24 113.541 123.28 1 20 ? N18 6O8 801 D 1 
HETATM 19 C C19 6O8 . . . Q 3 150.685 114.208 124.394 1 20 ? C19 6O8 801 D 1 
HETATM 20 C C20 6O8 . . . Q 3 150.229 112.802 122.613 1 20 ? C20 6O8 801 D 1 
HETATM 21 C C21 6O8 . . . Q 3 151.746 114.556 122.428 1 20 ? C21 6O8 801 D 1 
HETATM 22 O O22 6O8 . . . Q 3 153.647 107.676 127.749 1 20 ? O22 6O8 801 D 1 
HETATM 23 C C23 6O8 . . . Q 3 154.171 108.18 128.935 1 20 ? C23 6O8 801 D 1 
HETATM 24 O O24 6O8 . . . Q 3 154.111 109.318 129.181 1 20 ? O24 6O8 801 D 1 
HETATM 25 C C25 6O8 . . . Q 3 154.881 107.288 129.92 1 20 ? C25 6O8 801 D 1 
HETATM 26 C C26 6O8 . . . Q 3 155.903 108.046 130.741 1 20 ? C26 6O8 801 D 1 
HETATM 27 C C27 6O8 . . . Q 3 156.632 107.136 131.715 1 20 ? C27 6O8 801 D 1 
HETATM 28 C C28 6O8 . . . Q 3 158.006 107.676 132.083 1 20 ? C28 6O8 801 D 1 
HETATM 29 C C29 6O8 . . . Q 3 158.884 106.646 132.778 1 20 ? C29 6O8 801 D 1 
HETATM 30 H H011 6O8 . . . Q 3 161.493 108.001 127.184 1 20 ? H011 6O8 801 D 1 
HETATM 31 H H012 6O8 . . . Q 3 160.921 108.024 128.658 1 20 ? H012 6O8 801 D 1 
HETATM 32 H H022 6O8 . . . Q 3 160.754 105.719 127.043 1 20 ? H022 6O8 801 D 1 
HETATM 33 H H021 6O8 . . . Q 3 160.002 105.92 128.405 1 20 ? H021 6O8 801 D 1 
HETATM 34 H H031 6O8 . . . Q 3 159.385 107.463 126.132 1 20 ? H031 6O8 801 D 1 
HETATM 35 H H032 6O8 . . . Q 3 158.515 107.362 127.437 1 20 ? H032 6O8 801 D 1 
HETATM 36 H H041 6O8 . . . Q 3 158.887 105.197 125.689 1 20 ? H041 6O8 801 D 1 
HETATM 37 H H042 6O8 . . . Q 3 157.936 105.202 126.94 1 20 ? H042 6O8 801 D 1 
HETATM 38 H H081 6O8 . . . Q 3 155.571 106.324 126.977 1 20 ? H081 6O8 801 D 1 
HETATM 39 H H082 6O8 . . . Q 3 156.24 107.617 127.587 1 20 ? H082 6O8 801 D 1 
HETATM 40 H H091 6O8 . . . Q 3 154.573 108.947 126.604 1 20 ? H091 6O8 801 D 1 
HETATM 41 H H102 6O8 . . . Q 3 154.446 107.47 124.702 1 20 ? H102 6O8 801 D 1 
HETATM 42 H H101 6O8 . . . Q 3 153.419 106.636 125.544 1 20 ? H101 6O8 801 D 1 
HETATM 43 H H162 6O8 . . . Q 3 151.325 110.951 124.116 1 20 ? H162 6O8 801 D 1 
HETATM 44 H H161 6O8 . . . Q 3 151.287 111.969 125.327 1 20 ? H161 6O8 801 D 1 
HETATM 45 H H171 6O8 . . . Q 3 152.692 112.267 122.93 1 20 ? H171 6O8 801 D 1 
HETATM 46 H H172 6O8 . . . Q 3 152.947 113.221 124.155 1 20 ? H172 6O8 801 D 1 
HETATM 47 H H193 6O8 . . . Q 3 150.169 114.95 124.064 1 20 ? H193 6O8 801 D 1 
HETATM 48 H H191 6O8 . . . Q 3 150.131 113.603 124.888 1 20 ? H191 6O8 801 D 1 
HETATM 49 H H192 6O8 . . . Q 3 151.414 114.515 124.94 1 20 ? H192 6O8 801 D 1 
HETATM 50 H H202 6O8 . . . Q 3 150.652 112.17 122.027 1 20 ? H202 6O8 801 D 1 
HETATM 51 H H203 6O8 . . . Q 3 149.669 113.401 122.11 1 20 ? H203 6O8 801 D 1 
HETATM 52 H H201 6O8 . . . Q 3 149.706 112.337 123.268 1 20 ? H201 6O8 801 D 1 
HETATM 53 H H213 6O8 . . . Q 3 152.233 114.139 121.71 1 20 ? H213 6O8 801 D 1 
HETATM 54 H H212 6O8 . . . Q 3 151.008 115.071 122.085 1 20 ? H212 6O8 801 D 1 
HETATM 55 H H211 6O8 . . . Q 3 152.328 115.116 122.951 1 20 ? H211 6O8 801 D 1 
HETATM 56 H H252 6O8 . . . Q 3 155.32 106.586 129.428 1 20 ? H252 6O8 801 D 1 
HETATM 57 H H251 6O8 . . . Q 3 154.235 106.912 130.519 1 20 ? H251 6O8 801 D 1 
HETATM 58 H H262 6O8 . . . Q 3 156.541 108.46 130.152 1 20 ? H262 6O8 801 D 1 
HETATM 59 H H261 6O8 . . . Q 3 155.452 108.734 131.234 1 20 ? H261 6O8 801 D 1 
HETATM 60 H H272 6O8 . . . Q 3 156.73 106.264 131.32 1 20 ? H272 6O8 801 D 1 
HETATM 61 H H271 6O8 . . . Q 3 156.104 107.044 132.516 1 20 ? H271 6O8 801 D 1 
HETATM 62 H H281 6O8 . . . Q 3 158.453 107.971 131.279 1 20 ? H281 6O8 801 D 1 
HETATM 63 H H282 6O8 . . . Q 3 157.893 108.431 132.674 1 20 ? H282 6O8 801 D 1 
HETATM 64 H H291 6O8 . . . Q 3 159.104 105.935 132.161 1 20 ? H291 6O8 801 D 1 
HETATM 65 H H292 6O8 . . . Q 3 158.402 106.272 133.528 1 20 ? H292 6O8 801 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           65 
#