data_5IRX # _model_server_result.job_id Uj-0YS8pCYOtVFSs6X8izw _model_server_result.datetime_utc '2024-11-04 22:31:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5irx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":802}' # _entry.id 5IRX # _exptl.entry_id 5IRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 411.428 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 L N N ? 4 O N N ? 4 S N N ? 4 T N N ? 4 W N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C17 H34 N O8 P' _chem_comp.formula_weight 411.428 _chem_comp.id 6OE _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 6O8 A 1 801 19 6O8 LPA . H 4 6OE A 1 802 27 6OE LPC . I 4 6OE A 1 803 31 6OE LPC . J 5 6EU A 1 804 4 6EU 6EU . K 3 6O8 B 1 801 20 6O8 LPA . L 4 6OE B 1 802 30 6OE LPC . M 5 6EU B 1 803 2 6EU 6EU . N 3 6O8 C 1 801 18 6O8 LPA . O 4 6OE C 1 802 33 6OE LPC . P 5 6EU C 1 803 3 6EU 6EU . Q 3 6O8 D 1 801 21 6O8 LPA . R 6 6O9 D 1 802 24 6O9 LPB . S 4 6OE D 1 803 28 6OE LPC . T 4 6OE D 1 804 32 6OE LPC . U 5 6EU D 1 805 1 6EU 6EU . V 6 6O9 E 1 101 25 6O9 LPB . W 4 6OE E 1 102 29 6OE LPC . X 6 6O9 F 1 101 22 6O9 LPB . Y 6 6O9 F 1 102 23 6O9 LPB . Z 4 6OE F 1 103 26 6OE LPC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 6OE . . . H 4 100.95 93.575 149.03 1 20 ? N01 6OE 802 A 1 HETATM 2 C C02 6OE . . . H 4 100.766 94.744 148.194 1 20 ? C02 6OE 802 A 1 HETATM 3 C C03 6OE . . . H 4 99.59 95.572 148.694 1 20 ? C03 6OE 802 A 1 HETATM 4 O O04 6OE . . . H 4 99.187 96.424 147.663 1 20 ? O04 6OE 802 A 1 HETATM 5 P P05 6OE . . . H 4 97.664 97.046 147.706 1 20 ? P05 6OE 802 A 1 HETATM 6 O O06 6OE . . . H 4 96.764 96.153 148.523 1 20 ? O06 6OE 802 A 1 HETATM 7 O O07 6OE . . . H 4 97.703 98.431 148.302 1 20 ? O07 6OE 802 A 1 HETATM 8 O O08 6OE . . . H 4 97.12 97.137 146.158 1 20 ? O08 6OE 802 A 1 HETATM 9 C C09 6OE . . . H 4 98.015 97.733 145.272 1 20 ? C09 6OE 802 A 1 HETATM 10 C C10 6OE . . . H 4 97.633 97.436 143.834 1 20 ? C10 6OE 802 A 1 HETATM 11 C C11 6OE . . . H 4 98.888 97.114 143.041 1 20 ? C11 6OE 802 A 1 HETATM 12 O O12 6OE . . . H 4 99.752 98.208 143.133 1 20 ? O12 6OE 802 A 1 HETATM 13 C C13 6OE . . . H 4 100.584 98.357 142.02 1 20 ? C13 6OE 802 A 1 HETATM 14 C C14 6OE . . . H 4 100.897 99.746 141.471 1 20 ? C14 6OE 802 A 1 HETATM 15 C C15 6OE . . . H 4 101.303 99.707 140.004 1 20 ? C15 6OE 802 A 1 HETATM 16 C C16 6OE . . . H 4 100.878 100.951 139.23 1 20 ? C16 6OE 802 A 1 HETATM 17 C C17 6OE . . . H 4 100.643 100.657 137.746 1 20 ? C17 6OE 802 A 1 HETATM 18 C C18 6OE . . . H 4 99.705 101.644 137.048 1 20 ? C18 6OE 802 A 1 HETATM 19 O O19 6OE . . . H 4 101.049 97.4 141.504 1 20 ? O19 6OE 802 A 1 HETATM 20 O O20 6OE . . . H 4 97.037 98.574 143.273 1 20 ? O20 6OE 802 A 1 HETATM 21 C C21 6OE . . . H 4 96.276 98.338 142.12 1 20 ? C21 6OE 802 A 1 HETATM 22 C C22 6OE . . . H 4 96.098 99.424 141.063 1 20 ? C22 6OE 802 A 1 HETATM 23 C C23 6OE . . . H 4 96.933 100.662 141.35 1 20 ? C23 6OE 802 A 1 HETATM 24 C C24 6OE . . . H 4 96.763 101.766 140.308 1 20 ? C24 6OE 802 A 1 HETATM 25 C C25 6OE . . . H 4 97.212 103.13 140.834 1 20 ? C25 6OE 802 A 1 HETATM 26 C C26 6OE . . . H 4 97.736 104.075 139.757 1 20 ? C26 6OE 802 A 1 HETATM 27 O O27 6OE . . . H 4 95.756 97.289 141.959 1 20 ? O27 6OE 802 A 1 HETATM 28 H H011 6OE . . . H 4 101.68 93.682 149.524 1 20 ? H011 6OE 802 A 1 HETATM 29 H H012 6OE . . . H 4 100.244 93.483 149.562 1 20 ? H012 6OE 802 A 1 HETATM 30 H H022 6OE . . . H 4 100.59 94.464 147.284 1 20 ? H022 6OE 802 A 1 HETATM 31 H H021 6OE . . . H 4 101.571 95.283 148.22 1 20 ? H021 6OE 802 A 1 HETATM 32 H H032 6OE . . . H 4 98.858 94.987 148.943 1 20 ? H032 6OE 802 A 1 HETATM 33 H H031 6OE . . . H 4 99.865 96.097 149.459 1 20 ? H031 6OE 802 A 1 HETATM 34 H H092 6OE . . . H 4 98.017 98.688 145.413 1 20 ? H092 6OE 802 A 1 HETATM 35 H H091 6OE . . . H 4 98.9 97.374 145.435 1 20 ? H091 6OE 802 A 1 HETATM 36 H H101 6OE . . . H 4 97.024 96.686 143.811 1 20 ? H101 6OE 802 A 1 HETATM 37 H H112 6OE . . . H 4 98.663 96.949 142.117 1 20 ? H112 6OE 802 A 1 HETATM 38 H H111 6OE . . . H 4 99.312 96.334 143.424 1 20 ? H111 6OE 802 A 1 HETATM 39 H H142 6OE . . . H 4 100.119 100.309 141.569 1 20 ? H142 6OE 802 A 1 HETATM 40 H H141 6OE . . . H 4 101.622 100.13 141.978 1 20 ? H141 6OE 802 A 1 HETATM 41 H H151 6OE . . . H 4 100.913 98.924 139.593 1 20 ? H151 6OE 802 A 1 HETATM 42 H H152 6OE . . . H 4 102.265 99.634 139.96 1 20 ? H152 6OE 802 A 1 HETATM 43 H H161 6OE . . . H 4 101.574 101.618 139.317 1 20 ? H161 6OE 802 A 1 HETATM 44 H H162 6OE . . . H 4 100.065 101.3 139.619 1 20 ? H162 6OE 802 A 1 HETATM 45 H H172 6OE . . . H 4 101.497 100.676 137.295 1 20 ? H172 6OE 802 A 1 HETATM 46 H H171 6OE . . . H 4 100.274 99.766 137.657 1 20 ? H171 6OE 802 A 1 HETATM 47 H H181 6OE . . . H 4 100.006 102.548 137.207 1 20 ? H181 6OE 802 A 1 HETATM 48 H H182 6OE . . . H 4 98.805 101.538 137.387 1 20 ? H182 6OE 802 A 1 HETATM 49 H H222 6OE . . . H 4 96.357 99.07 140.201 1 20 ? H222 6OE 802 A 1 HETATM 50 H H221 6OE . . . H 4 95.167 99.679 141.03 1 20 ? H221 6OE 802 A 1 HETATM 51 H H231 6OE . . . H 4 97.862 100.399 141.375 1 20 ? H231 6OE 802 A 1 HETATM 52 H H232 6OE . . . H 4 96.675 101.004 142.217 1 20 ? H232 6OE 802 A 1 HETATM 53 H H242 6OE . . . H 4 97.285 101.542 139.525 1 20 ? H242 6OE 802 A 1 HETATM 54 H H241 6OE . . . H 4 95.829 101.817 140.059 1 20 ? H241 6OE 802 A 1 HETATM 55 H H252 6OE . . . H 4 96.458 103.553 141.268 1 20 ? H252 6OE 802 A 1 HETATM 56 H H251 6OE . . . H 4 97.915 102.996 141.486 1 20 ? H251 6OE 802 A 1 HETATM 57 H H262 6OE . . . H 4 97.005 104.339 139.181 1 20 ? H262 6OE 802 A 1 HETATM 58 H H261 6OE . . . H 4 98.415 103.627 139.236 1 20 ? H261 6OE 802 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 58 #