data_5IRX # _model_server_result.job_id vSYPVwQbU-m0Cs7t-OmJnA _model_server_result.datetime_utc '2024-11-04 22:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5irx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":802}' # _entry.id 5IRX # _exptl.entry_id 5IRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 411.428 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 L N N ? 4 O N N ? 4 S N N ? 4 T N N ? 4 W N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C17 H34 N O8 P' _chem_comp.formula_weight 411.428 _chem_comp.id 6OE _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 6O8 A 1 801 19 6O8 LPA . H 4 6OE A 1 802 27 6OE LPC . I 4 6OE A 1 803 31 6OE LPC . J 5 6EU A 1 804 4 6EU 6EU . K 3 6O8 B 1 801 20 6O8 LPA . L 4 6OE B 1 802 30 6OE LPC . M 5 6EU B 1 803 2 6EU 6EU . N 3 6O8 C 1 801 18 6O8 LPA . O 4 6OE C 1 802 33 6OE LPC . P 5 6EU C 1 803 3 6EU 6EU . Q 3 6O8 D 1 801 21 6O8 LPA . R 6 6O9 D 1 802 24 6O9 LPB . S 4 6OE D 1 803 28 6OE LPC . T 4 6OE D 1 804 32 6OE LPC . U 5 6EU D 1 805 1 6EU 6EU . V 6 6O9 E 1 101 25 6O9 LPB . W 4 6OE E 1 102 29 6OE LPC . X 6 6O9 F 1 101 22 6O9 LPB . Y 6 6O9 F 1 102 23 6O9 LPB . Z 4 6OE F 1 103 26 6OE LPC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 6OE . . . O 4 135.671 80.203 153.408 1 20 ? N01 6OE 802 C 1 HETATM 2 C C02 6OE . . . O 4 134.255 80.041 153.138 1 20 ? C02 6OE 802 C 1 HETATM 3 C C03 6OE . . . O 4 133.708 78.822 153.878 1 20 ? C03 6OE 802 C 1 HETATM 4 O O04 6OE . . . O 4 132.565 78.379 153.207 1 20 ? O04 6OE 802 C 1 HETATM 5 P P05 6OE . . . O 4 132.566 76.881 152.519 1 20 ? P05 6OE 802 C 1 HETATM 6 O O06 6OE . . . O 4 133.964 76.499 152.098 1 20 ? O06 6OE 802 C 1 HETATM 7 O O07 6OE . . . O 4 132.032 75.869 153.504 1 20 ? O07 6OE 802 C 1 HETATM 8 O O08 6OE . . . O 4 131.586 76.925 151.2 1 20 ? O08 6OE 802 C 1 HETATM 9 C C09 6OE . . . O 4 130.366 77.589 151.351 1 20 ? C09 6OE 802 C 1 HETATM 10 C C10 6OE . . . O 4 130.092 78.382 150.078 1 20 ? C10 6OE 802 C 1 HETATM 11 C C11 6OE . . . O 4 129.266 79.641 150.334 1 20 ? C11 6OE 802 C 1 HETATM 12 O O12 6OE . . . O 4 129.988 80.769 149.934 1 20 ? O12 6OE 802 C 1 HETATM 13 C C13 6OE . . . O 4 129.715 81.172 148.623 1 20 ? C13 6OE 802 C 1 HETATM 14 C C14 6OE . . . O 4 129.18 82.573 148.346 1 20 ? C14 6OE 802 C 1 HETATM 15 C C15 6OE . . . O 4 128.784 82.766 146.887 1 20 ? C15 6OE 802 C 1 HETATM 16 C C16 6OE . . . O 4 127.922 84.002 146.651 1 20 ? C16 6OE 802 C 1 HETATM 17 C C17 6OE . . . O 4 127.518 84.152 145.187 1 20 ? C17 6OE 802 C 1 HETATM 18 C C18 6OE . . . O 4 126.446 85.212 144.951 1 20 ? C18 6OE 802 C 1 HETATM 19 O O19 6OE . . . O 4 129.905 80.426 147.724 1 20 ? O19 6OE 802 C 1 HETATM 20 O O20 6OE . . . O 4 129.376 77.542 149.22 1 20 ? O20 6OE 802 C 1 HETATM 21 C C21 6OE . . . O 4 129.791 77.569 147.886 1 20 ? C21 6OE 802 C 1 HETATM 22 C C22 6OE . . . O 4 128.774 77.329 146.779 1 20 ? C22 6OE 802 C 1 HETATM 23 C C23 6OE . . . O 4 129.319 77.728 145.413 1 20 ? C23 6OE 802 C 1 HETATM 24 C C24 6OE . . . O 4 128.221 77.962 144.384 1 20 ? C24 6OE 802 C 1 HETATM 25 C C25 6OE . . . O 4 128.653 78.934 143.296 1 20 ? C25 6OE 802 C 1 HETATM 26 C C26 6OE . . . O 4 128.076 78.55 141.943 1 20 ? C26 6OE 802 C 1 HETATM 27 O O27 6OE . . . O 4 130.923 77.771 147.606 1 20 ? O27 6OE 802 C 1 HETATM 28 H H011 6OE . . . O 4 136.113 80.262 152.638 1 20 ? H011 6OE 802 C 1 HETATM 29 H H012 6OE . . . O 4 135.799 80.946 153.88 1 20 ? H012 6OE 802 C 1 HETATM 30 H H022 6OE . . . O 4 134.12 79.925 152.184 1 20 ? H022 6OE 802 C 1 HETATM 31 H H021 6OE . . . O 4 133.78 80.832 153.436 1 20 ? H021 6OE 802 C 1 HETATM 32 H H032 6OE . . . O 4 134.376 78.12 153.889 1 20 ? H032 6OE 802 C 1 HETATM 33 H H031 6OE . . . O 4 133.474 79.07 154.786 1 20 ? H031 6OE 802 C 1 HETATM 34 H H092 6OE . . . O 4 129.658 76.943 151.492 1 20 ? H092 6OE 802 C 1 HETATM 35 H H091 6OE . . . O 4 130.416 78.19 152.109 1 20 ? H091 6OE 802 C 1 HETATM 36 H H101 6OE . . . O 4 130.936 78.634 149.676 1 20 ? H101 6OE 802 C 1 HETATM 37 H H112 6OE . . . O 4 129.071 79.712 151.281 1 20 ? H112 6OE 802 C 1 HETATM 38 H H111 6OE . . . O 4 128.436 79.596 149.836 1 20 ? H111 6OE 802 C 1 HETATM 39 H H142 6OE . . . O 4 128.403 82.722 148.902 1 20 ? H142 6OE 802 C 1 HETATM 40 H H141 6OE . . . O 4 129.862 83.22 148.576 1 20 ? H141 6OE 802 C 1 HETATM 41 H H151 6OE . . . O 4 128.294 81.986 146.595 1 20 ? H151 6OE 802 C 1 HETATM 42 H H152 6OE . . . O 4 129.588 82.845 146.356 1 20 ? H152 6OE 802 C 1 HETATM 43 H H161 6OE . . . O 4 127.124 83.931 147.191 1 20 ? H161 6OE 802 C 1 HETATM 44 H H172 6OE . . . O 4 128.302 84.384 144.67 1 20 ? H172 6OE 802 C 1 HETATM 45 H H171 6OE . . . O 4 127.183 83.302 144.874 1 20 ? H171 6OE 802 C 1 HETATM 46 H H181 6OE . . . O 4 126.708 86.038 145.377 1 20 ? H181 6OE 802 C 1 HETATM 47 H H182 6OE . . . O 4 125.608 84.911 145.324 1 20 ? H182 6OE 802 C 1 HETATM 48 H H222 6OE . . . O 4 128.545 76.389 146.767 1 20 ? H222 6OE 802 C 1 HETATM 49 H H221 6OE . . . O 4 127.979 77.845 146.966 1 20 ? H221 6OE 802 C 1 HETATM 50 H H231 6OE . . . O 4 129.902 77.024 145.093 1 20 ? H231 6OE 802 C 1 HETATM 51 H H232 6OE . . . O 4 129.83 78.544 145.509 1 20 ? H232 6OE 802 C 1 HETATM 52 H H242 6OE . . . O 4 127.987 77.119 143.971 1 20 ? H242 6OE 802 C 1 HETATM 53 H H241 6OE . . . O 4 127.443 78.322 144.83 1 20 ? H241 6OE 802 C 1 HETATM 54 H H252 6OE . . . O 4 128.347 79.822 143.527 1 20 ? H252 6OE 802 C 1 HETATM 55 H H251 6OE . . . O 4 129.618 78.936 143.238 1 20 ? H251 6OE 802 C 1 HETATM 56 H H262 6OE . . . O 4 127.12 78.436 142.027 1 20 ? H262 6OE 802 C 1 HETATM 57 H H261 6OE . . . O 4 128.473 77.719 141.648 1 20 ? H261 6OE 802 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 57 #