data_5IRX
#
_model_server_result.job_id            GJzlE8Nuf36TuPcuGzK6Jw 
_model_server_result.datetime_utc      '2025-03-13 18:06:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":802}' 
#
_entry.id    5IRX 
#
_exptl.entry_id    5IRX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              341.295 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2-(acetyloxy)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}propyl pentanoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 R N N 
? 6 V N N 
? 6 X N N 
? 6 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C12 H24 N O8 P' 
_chem_comp.formula_weight    341.295 
_chem_comp.id                6O9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2-(acetyloxy)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}propyl pentanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C16 6O9 sing 160 n n 
C16 C15 6O9 sing 161 n n 
C15 C14 6O9 sing 162 n n 
C14 C13 6O9 sing 163 n n 
O18 C13 6O9 doub 164 n n 
C13 O12 6O9 sing 165 n n 
O12 C11 6O9 sing 166 n n 
C11 C10 6O9 sing 167 n n 
O19 C10 6O9 sing 168 n n 
O19 C20 6O9 sing 169 n n 
C21 C20 6O9 sing 170 n n 
C10 C09 6O9 sing 171 n n 
C20 O22 6O9 doub 172 n n 
C09 O08 6O9 sing 173 n n 
O08 P05 6O9 sing 174 n n 
P05 O07 6O9 doub 175 n n 
P05 O04 6O9 sing 176 n n 
P05 O06 6O9 sing 177 n n 
O04 C03 6O9 sing 178 n n 
C03 C02 6O9 sing 179 n n 
C02 N01 6O9 sing 180 n n 
N01 H012 6O9 sing 181 n n 
N01 H011 6O9 sing 182 n n 
C02 H022 6O9 sing 183 n n 
C02 H021 6O9 sing 184 n n 
C03 H032 6O9 sing 185 n n 
C03 H031 6O9 sing 186 n n 
O06 H2 6O9 sing 187 n n 
C09 H092 6O9 sing 188 n n 
C09 H091 6O9 sing 189 n n 
C10 H101 6O9 sing 190 n n 
C11 H111 6O9 sing 191 n n 
C11 H112 6O9 sing 192 n n 
C14 H141 6O9 sing 193 n n 
C14 H142 6O9 sing 194 n n 
C15 H152 6O9 sing 195 n n 
C15 H151 6O9 sing 196 n n 
C16 H161 6O9 sing 197 n n 
C16 H162 6O9 sing 198 n n 
C17 H173 6O9 sing 199 n n 
C17 H172 6O9 sing 200 n n 
C17 H3 6O9 sing 201 n n 
C21 H213 6O9 sing 202 n n 
C21 H212 6O9 sing 203 n n 
C21 H4 6O9 sing 204 n n 
#
_atom_sites.entry_id                     5IRX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 6O8 A 1 801 19 6O8 LPA . 
H 4 6OE A 1 802 27 6OE LPC . 
I 4 6OE A 1 803 31 6OE LPC . 
J 5 6EU A 1 804 4 6EU 6EU . 
K 3 6O8 B 1 801 20 6O8 LPA . 
L 4 6OE B 1 802 30 6OE LPC . 
M 5 6EU B 1 803 2 6EU 6EU . 
N 3 6O8 C 1 801 18 6O8 LPA . 
O 4 6OE C 1 802 33 6OE LPC . 
P 5 6EU C 1 803 3 6EU 6EU . 
Q 3 6O8 D 1 801 21 6O8 LPA . 
R 6 6O9 D 1 802 24 6O9 LPB . 
S 4 6OE D 1 803 28 6OE LPC . 
T 4 6OE D 1 804 32 6OE LPC . 
U 5 6EU D 1 805 1 6EU 6EU . 
V 6 6O9 E 1 101 25 6O9 LPB . 
W 4 6OE E 1 102 29 6OE LPC . 
X 6 6O9 F 1 101 22 6O9 LPB . 
Y 6 6O9 F 1 102 23 6O9 LPB . 
Z 4 6OE F 1 103 26 6OE LPC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 6O9 . . . R 6 146.76 131.853 156.777 1 20 ? N01 6O9 802 D 1 
HETATM 2 C C02 6O9 . . . R 6 147.966 132.625 156.606 1 20 ? C02 6O9 802 D 1 
HETATM 3 C C03 6O9 . . . R 6 147.886 133.361 155.277 1 20 ? C03 6O9 802 D 1 
HETATM 4 O O04 6O9 . . . R 6 149.07 133.139 154.571 1 20 ? O04 6O9 802 D 1 
HETATM 5 P P05 6O9 . . . R 6 149.313 131.631 153.961 1 20 ? P05 6O9 802 D 1 
HETATM 6 O O06 6O9 . . . R 6 148.32 130.686 154.59 1 20 ? O06 6O9 802 D 1 
HETATM 7 O O07 6O9 . . . R 6 150.719 131.172 154.265 1 20 ? O07 6O9 802 D 1 
HETATM 8 O O08 6O9 . . . R 6 149.069 131.671 152.335 1 20 ? O08 6O9 802 D 1 
HETATM 9 C C09 6O9 . . . R 6 148.483 130.56 151.725 1 20 ? C09 6O9 802 D 1 
HETATM 10 C C10 6O9 . . . R 6 147.193 130.995 151.041 1 20 ? C10 6O9 802 D 1 
HETATM 11 C C11 6O9 . . . R 6 146.731 129.987 149.994 1 20 ? C11 6O9 802 D 1 
HETATM 12 O O12 6O9 . . . R 6 146.067 130.668 148.973 1 20 ? O12 6O9 802 D 1 
HETATM 13 C C13 6O9 . . . R 6 145.916 129.928 147.799 1 20 ? C13 6O9 802 D 1 
HETATM 14 C C14 6O9 . . . R 6 145.278 130.585 146.584 1 20 ? C14 6O9 802 D 1 
HETATM 15 C C15 6O9 . . . R 6 145.51 129.837 145.279 1 20 ? C15 6O9 802 D 1 
HETATM 16 C C16 6O9 . . . R 6 144.471 130.213 144.231 1 20 ? C16 6O9 802 D 1 
HETATM 17 C C17 6O9 . . . R 6 144.809 129.745 142.821 1 20 ? C17 6O9 802 D 1 
HETATM 18 O O18 6O9 . . . R 6 146.276 128.804 147.749 1 20 ? O18 6O9 802 D 1 
HETATM 19 O O19 6O9 . . . R 6 147.423 132.221 150.406 1 20 ? O19 6O9 802 D 1 
HETATM 20 C C20 6O9 . . . R 6 147.101 133.353 151.167 1 20 ? C20 6O9 802 D 1 
HETATM 21 C C21 6O9 . . . R 6 146.752 134.672 150.473 1 20 ? C21 6O9 802 D 1 
HETATM 22 O O22 6O9 . . . R 6 147.105 133.294 152.35 1 20 ? O22 6O9 802 D 1 
HETATM 23 H H012 6O9 . . . R 6 146.616 131.374 156.045 1 20 ? H012 6O9 802 D 1 
HETATM 24 H H011 6O9 . . . R 6 146.077 132.407 156.912 1 20 ? H011 6O9 802 D 1 
HETATM 25 H H022 6O9 . . . R 6 148.728 132.03 156.611 1 20 ? H022 6O9 802 D 1 
HETATM 26 H H021 6O9 . . . R 6 148.044 133.267 157.326 1 20 ? H021 6O9 802 D 1 
HETATM 27 H H032 6O9 . . . R 6 147.141 133.015 154.769 1 20 ? H032 6O9 802 D 1 
HETATM 28 H H031 6O9 . . . R 6 147.763 134.308 155.435 1 20 ? H031 6O9 802 D 1 
HETATM 29 H H092 6O9 . . . R 6 149.091 130.197 151.064 1 20 ? H092 6O9 802 D 1 
HETATM 30 H H091 6O9 . . . R 6 148.284 129.885 152.39 1 20 ? H091 6O9 802 D 1 
HETATM 31 H H101 6O9 . . . R 6 146.502 131.101 151.707 1 20 ? H101 6O9 802 D 1 
HETATM 32 H H111 6O9 . . . R 6 147.499 129.527 149.632 1 20 ? H111 6O9 802 D 1 
HETATM 33 H H112 6O9 . . . R 6 146.132 129.347 150.398 1 20 ? H112 6O9 802 D 1 
HETATM 34 H H141 6O9 . . . R 6 145.644 131.474 146.495 1 20 ? H141 6O9 802 D 1 
HETATM 35 H H142 6O9 . . . R 6 144.326 130.652 146.732 1 20 ? H142 6O9 802 D 1 
HETATM 36 H H152 6O9 . . . R 6 146.387 130.059 144.943 1 20 ? H152 6O9 802 D 1 
HETATM 37 H H151 6O9 . . . R 6 145.463 128.887 145.447 1 20 ? H151 6O9 802 D 1 
HETATM 38 H H161 6O9 . . . R 6 144.383 131.175 144.226 1 20 ? H161 6O9 802 D 1 
HETATM 39 H H162 6O9 . . . R 6 143.628 129.822 144.487 1 20 ? H162 6O9 802 D 1 
HETATM 40 H H173 6O9 . . . R 6 145.407 130.381 142.404 1 20 ? H173 6O9 802 D 1 
HETATM 41 H H172 6O9 . . . R 6 145.234 128.879 142.864 1 20 ? H172 6O9 802 D 1 
HETATM 42 H H213 6O9 . . . R 6 147.565 135.114 150.187 1 20 ? H213 6O9 802 D 1 
HETATM 43 H H212 6O9 . . . R 6 146.277 135.248 151.093 1 20 ? H212 6O9 802 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#