data_5IRX # _model_server_result.job_id 35UeOLqL7WlYaXj8wb4Rtg _model_server_result.datetime_utc '2024-11-04 22:35:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5irx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":803}' # _entry.id 5IRX # _exptl.entry_id 5IRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 411.428 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 L N N ? 4 O N N ? 4 S N N ? 4 T N N ? 4 W N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C17 H34 N O8 P' _chem_comp.formula_weight 411.428 _chem_comp.id 6OE _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 6O8 A 1 801 19 6O8 LPA . H 4 6OE A 1 802 27 6OE LPC . I 4 6OE A 1 803 31 6OE LPC . J 5 6EU A 1 804 4 6EU 6EU . K 3 6O8 B 1 801 20 6O8 LPA . L 4 6OE B 1 802 30 6OE LPC . M 5 6EU B 1 803 2 6EU 6EU . N 3 6O8 C 1 801 18 6O8 LPA . O 4 6OE C 1 802 33 6OE LPC . P 5 6EU C 1 803 3 6EU 6EU . Q 3 6O8 D 1 801 21 6O8 LPA . R 6 6O9 D 1 802 24 6O9 LPB . S 4 6OE D 1 803 28 6OE LPC . T 4 6OE D 1 804 32 6OE LPC . U 5 6EU D 1 805 1 6EU 6EU . V 6 6O9 E 1 101 25 6O9 LPB . W 4 6OE E 1 102 29 6OE LPC . X 6 6O9 F 1 101 22 6O9 LPB . Y 6 6O9 F 1 102 23 6O9 LPB . Z 4 6OE F 1 103 26 6OE LPC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 6OE . . . S 4 132.465 139.818 149.014 1 20 ? N01 6OE 803 D 1 HETATM 2 C C02 6OE . . . S 4 132.65 138.639 148.192 1 20 ? C02 6OE 803 D 1 HETATM 3 C C03 6OE . . . S 4 133.83 137.821 148.702 1 20 ? C03 6OE 803 D 1 HETATM 4 O O04 6OE . . . S 4 134.207 136.929 147.696 1 20 ? O04 6OE 803 D 1 HETATM 5 P P05 6OE . . . S 4 135.727 136.298 147.735 1 20 ? P05 6OE 803 D 1 HETATM 6 O O06 6OE . . . S 4 136.628 137.17 148.574 1 20 ? O06 6OE 803 D 1 HETATM 7 O O07 6OE . . . S 4 135.679 134.901 148.303 1 20 ? O07 6OE 803 D 1 HETATM 8 O O08 6OE . . . S 4 136.279 136.236 146.189 1 20 ? O08 6OE 803 D 1 HETATM 9 C C09 6OE . . . S 4 135.41 135.616 145.295 1 20 ? C09 6OE 803 D 1 HETATM 10 C C10 6OE . . . S 4 135.782 135.944 143.862 1 20 ? C10 6OE 803 D 1 HETATM 11 C C11 6OE . . . S 4 134.525 136.281 143.077 1 20 ? C11 6OE 803 D 1 HETATM 12 O O12 6OE . . . S 4 133.658 135.188 143.154 1 20 ? O12 6OE 803 D 1 HETATM 13 C C13 6OE . . . S 4 132.831 135.049 142.035 1 20 ? C13 6OE 803 D 1 HETATM 14 C C14 6OE . . . S 4 132.512 133.663 141.481 1 20 ? C14 6OE 803 D 1 HETATM 15 C C15 6OE . . . S 4 132.101 133.706 140.016 1 20 ? C15 6OE 803 D 1 HETATM 16 C C16 6OE . . . S 4 132.518 132.461 139.239 1 20 ? C16 6OE 803 D 1 HETATM 17 C C17 6OE . . . S 4 132.749 132.753 137.754 1 20 ? C17 6OE 803 D 1 HETATM 18 C C18 6OE . . . S 4 133.685 131.764 137.055 1 20 ? C18 6OE 803 D 1 HETATM 19 O O19 6OE . . . S 4 132.375 136.01 141.518 1 20 ? O19 6OE 803 D 1 HETATM 20 O O20 6OE . . . S 4 136.378 134.817 143.281 1 20 ? O20 6OE 803 D 1 HETATM 21 C C21 6OE . . . S 4 137.122 135.068 142.121 1 20 ? C21 6OE 803 D 1 HETATM 22 C C22 6OE . . . S 4 137.306 133.983 141.064 1 20 ? C22 6OE 803 D 1 HETATM 23 C C23 6OE . . . S 4 136.496 132.734 141.37 1 20 ? C23 6OE 803 D 1 HETATM 24 C C24 6OE . . . S 4 136.644 131.639 140.316 1 20 ? C24 6OE 803 D 1 HETATM 25 C C25 6OE . . . S 4 136.194 130.273 140.835 1 20 ? C25 6OE 803 D 1 HETATM 26 C C26 6OE . . . S 4 135.668 129.334 139.755 1 20 ? C26 6OE 803 D 1 HETATM 27 O O27 6OE . . . S 4 137.622 136.126 141.955 1 20 ? O27 6OE 803 D 1 HETATM 28 H H011 6OE . . . S 4 131.728 139.72 149.501 1 20 ? H011 6OE 803 D 1 HETATM 29 H H012 6OE . . . S 4 133.165 139.91 149.553 1 20 ? H012 6OE 803 D 1 HETATM 30 H H022 6OE . . . S 4 132.825 138.909 147.279 1 20 ? H022 6OE 803 D 1 HETATM 31 H H021 6OE . . . S 4 131.847 138.098 148.225 1 20 ? H021 6OE 803 D 1 HETATM 32 H H032 6OE . . . S 4 134.57 138.41 148.915 1 20 ? H032 6OE 803 D 1 HETATM 33 H H031 6OE . . . S 4 133.566 137.329 149.491 1 20 ? H031 6OE 803 D 1 HETATM 34 H H092 6OE . . . S 4 135.448 134.659 145.426 1 20 ? H092 6OE 803 D 1 HETATM 35 H H091 6OE . . . S 4 134.511 135.937 145.462 1 20 ? H091 6OE 803 D 1 HETATM 36 H H101 6OE . . . S 4 136.391 136.695 143.852 1 20 ? H101 6OE 803 D 1 HETATM 37 H H112 6OE . . . S 4 134.748 136.46 142.155 1 20 ? H112 6OE 803 D 1 HETATM 38 H H111 6OE . . . S 4 134.105 137.057 143.472 1 20 ? H111 6OE 803 D 1 HETATM 39 H H142 6OE . . . S 4 133.288 133.097 141.575 1 20 ? H142 6OE 803 D 1 HETATM 40 H H141 6OE . . . S 4 131.787 133.28 141.989 1 20 ? H141 6OE 803 D 1 HETATM 41 H H151 6OE . . . S 4 132.494 134.487 139.604 1 20 ? H151 6OE 803 D 1 HETATM 42 H H152 6OE . . . S 4 131.139 133.784 139.974 1 20 ? H152 6OE 803 D 1 HETATM 43 H H161 6OE . . . S 4 131.818 131.796 139.328 1 20 ? H161 6OE 803 D 1 HETATM 44 H H162 6OE . . . S 4 133.33 132.107 139.626 1 20 ? H162 6OE 803 D 1 HETATM 45 H H172 6OE . . . S 4 131.895 132.734 137.305 1 20 ? H172 6OE 803 D 1 HETATM 46 H H171 6OE . . . S 4 133.12 133.643 137.664 1 20 ? H171 6OE 803 D 1 HETATM 47 H H181 6OE . . . S 4 133.385 130.86 137.218 1 20 ? H181 6OE 803 D 1 HETATM 48 H H182 6OE . . . S 4 134.586 131.871 137.391 1 20 ? H182 6OE 803 D 1 HETATM 49 H H222 6OE . . . S 4 137.029 134.33 140.205 1 20 ? H222 6OE 803 D 1 HETATM 50 H H221 6OE . . . S 4 138.241 133.744 141.019 1 20 ? H221 6OE 803 D 1 HETATM 51 H H231 6OE . . . S 4 135.564 132.986 141.426 1 20 ? H231 6OE 803 D 1 HETATM 52 H H232 6OE . . . S 4 136.784 132.388 142.227 1 20 ? H232 6OE 803 D 1 HETATM 53 H H242 6OE . . . S 4 136.112 131.874 139.542 1 20 ? H242 6OE 803 D 1 HETATM 54 H H241 6OE . . . S 4 137.574 131.585 140.053 1 20 ? H241 6OE 803 D 1 HETATM 55 H H252 6OE . . . S 4 136.948 129.847 141.267 1 20 ? H252 6OE 803 D 1 HETATM 56 H H251 6OE . . . S 4 135.492 130.404 141.488 1 20 ? H251 6OE 803 D 1 HETATM 57 H H262 6OE . . . S 4 136.398 129.069 139.178 1 20 ? H262 6OE 803 D 1 HETATM 58 H H261 6OE . . . S 4 134.991 129.787 139.234 1 20 ? H261 6OE 803 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 58 #