data_5IRX
#
_model_server_result.job_id            gnLFd3RIV-gDwVsVkCr11A 
_model_server_result.datetime_utc      '2024-11-04 22:31:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":804}' 
#
_entry.id    5IRX 
#
_exptl.entry_id    5IRX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              628.708 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            resiniferatoxin 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 J N N 
? 5 M N N 
? 5 P N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 2 E CYS 2 1_555 E SG CYS 16 E CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 E SG CYS 9 E CYS 9 1_555 E SG CYS 23 E CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 E SG CYS 15 E CYS 15 1_555 E SG CYS 31 E CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 E SG CYS 44 E CYS 44 1_555 E SG CYS 58 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 E SG CYS 51 E CYS 51 1_555 E SG CYS 63 E CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 E SG CYS 57 E CYS 57 1_555 E SG CYS 71 E CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 F SG CYS 2 F CYS 2 1_555 F SG CYS 16 F CYS 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 F SG CYS 9 F CYS 9 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf9 F SG CYS 15 F CYS 15 1_555 F SG CYS 31 F CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 F SG CYS 44 F CYS 44 1_555 F SG CYS 58 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 F SG CYS 51 F CYS 51 1_555 F SG CYS 63 F CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 57 F CYS 57 1_555 F SG CYS 71 F CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C37 H40 O9' 
_chem_comp.formula_weight    628.708 
_chem_comp.id                6EU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              resiniferatoxin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RTX 
#
_atom_sites.entry_id                     5IRX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 6O8 A 1 801 19 6O8 LPA . 
H 4 6OE A 1 802 27 6OE LPC . 
I 4 6OE A 1 803 31 6OE LPC . 
J 5 6EU A 1 804 4 6EU 6EU . 
K 3 6O8 B 1 801 20 6O8 LPA . 
L 4 6OE B 1 802 30 6OE LPC . 
M 5 6EU B 1 803 2 6EU 6EU . 
N 3 6O8 C 1 801 18 6O8 LPA . 
O 4 6OE C 1 802 33 6OE LPC . 
P 5 6EU C 1 803 3 6EU 6EU . 
Q 3 6O8 D 1 801 21 6O8 LPA . 
R 6 6O9 D 1 802 24 6O9 LPB . 
S 4 6OE D 1 803 28 6OE LPC . 
T 4 6OE D 1 804 32 6OE LPC . 
U 5 6EU D 1 805 1 6EU 6EU . 
V 6 6O9 E 1 101 25 6O9 LPB . 
W 4 6OE E 1 102 29 6OE LPC . 
X 6 6O9 F 1 101 22 6O9 LPB . 
Y 6 6O9 F 1 102 23 6O9 LPB . 
Z 4 6OE F 1 103 26 6OE LPC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBT 6EU . . . J 5 89.504 119.297 125.068 1 20 ? CBT 6EU 804 A 1 
HETATM 2 O OAH 6EU . . . J 5 90.115 118.046 125.361 1 20 ? OAH 6EU 804 A 1 
HETATM 3 C CBQ 6EU . . . J 5 91.457 118.173 125.241 1 20 ? CBQ 6EU 804 A 1 
HETATM 4 C CBO 6EU . . . J 5 92.318 118.157 126.327 1 20 ? CBO 6EU 804 A 1 
HETATM 5 C CBS 6EU . . . J 5 91.945 118.316 123.959 1 20 ? CBS 6EU 804 A 1 
HETATM 6 O OAI 6EU . . . J 5 91.037 118.32 122.956 1 20 ? OAI 6EU 804 A 1 
HETATM 7 C CBR 6EU . . . J 5 93.299 118.451 123.734 1 20 ? CBR 6EU 804 A 1 
HETATM 8 C CBP 6EU . . . J 5 94.164 118.438 124.817 1 20 ? CBP 6EU 804 A 1 
HETATM 9 C CBN 6EU . . . J 5 93.681 118.287 126.108 1 20 ? CBN 6EU 804 A 1 
HETATM 10 C CBM 6EU . . . J 5 94.579 118.283 127.165 1 20 ? CBM 6EU 804 A 1 
HETATM 11 C CBK 6EU . . . J 5 94.284 117.141 128.13 1 20 ? CBK 6EU 804 A 1 
HETATM 12 O OAG 6EU . . . J 5 93.35 117.211 128.92 1 20 ? OAG 6EU 804 A 1 
HETATM 13 O OAF 6EU . . . J 5 95.122 116.075 128.055 1 20 ? OAF 6EU 804 A 1 
HETATM 14 C CBC 6EU . . . J 5 95.735 115.806 129.323 1 20 ? CBC 6EU 804 A 1 
HETATM 15 C CAX 6EU . . . J 5 94.811 115.224 130.175 1 20 ? CAX 6EU 804 A 1 
HETATM 16 C CAS 6EU . . . J 5 94.277 114.013 129.725 1 20 ? CAS 6EU 804 A 1 
HETATM 17 C CAK 6EU . . . J 5 93.317 113.13 130.241 1 20 ? CAK 6EU 804 A 1 
HETATM 18 C CAU 6EU . . . J 5 94.564 115.939 131.352 1 20 ? CAU 6EU 804 A 1 
HETATM 19 C CAR 6EU . . . J 5 93.541 115.22 132.206 1 20 ? CAR 6EU 804 A 1 
HETATM 20 O OAD 6EU . . . J 5 92.282 115.243 131.546 1 20 ? OAD 6EU 804 A 1 
HETATM 21 C CAZ 6EU . . . J 5 93.328 115.769 133.446 1 20 ? CAZ 6EU 804 A 1 
HETATM 22 O OAE 6EU . . . J 5 92.919 116.909 133.626 1 20 ? OAE 6EU 804 A 1 
HETATM 23 C CBA 6EU . . . J 5 93.521 114.883 134.413 1 20 ? CBA 6EU 804 A 1 
HETATM 24 C CBF 6EU . . . J 5 93.319 115.177 135.895 1 20 ? CBF 6EU 804 A 1 
HETATM 25 C CAW 6EU . . . J 5 93.919 113.71 133.942 1 20 ? CAW 6EU 804 A 1 
HETATM 26 C CAO 6EU . . . J 5 94.035 113.825 132.556 1 20 ? CAO 6EU 804 A 1 
HETATM 27 C CAJ 6EU . . . J 5 93.432 112.718 131.73 1 20 ? CAJ 6EU 804 A 1 
HETATM 28 O OAA 6EU . . . J 5 94.289 111.557 131.903 1 20 ? OAA 6EU 804 A 1 
HETATM 29 C CAN 6EU . . . J 5 92.019 112.305 132.188 1 20 ? CAN 6EU 804 A 1 
HETATM 30 C CAT 6EU . . . J 5 92.112 111.543 133.505 1 20 ? CAT 6EU 804 A 1 
HETATM 31 C CAP 6EU . . . J 5 91.243 111.424 131.137 1 20 ? CAP 6EU 804 A 1 
HETATM 32 C CAM 6EU . . . J 5 92.191 110.796 130.076 1 20 ? CAM 6EU 804 A 1 
HETATM 33 C CAV 6EU . . . J 5 91.416 110.077 128.985 1 20 ? CAV 6EU 804 A 1 
HETATM 34 C CBB 6EU . . . J 5 89.901 110.219 128.902 1 20 ? CBB 6EU 804 A 1 
HETATM 35 C CBD 6EU . . . J 5 92.162 109.212 127.974 1 20 ? CBD 6EU 804 A 1 
HETATM 36 O OAC 6EU . . . J 5 93.027 109.877 130.765 1 20 ? OAC 6EU 804 A 1 
HETATM 37 C CAL 6EU . . . J 5 93.202 111.819 129.446 1 20 ? CAL 6EU 804 A 1 
HETATM 38 O OAB 6EU . . . J 5 94.428 111.138 129.596 1 20 ? OAB 6EU 804 A 1 
HETATM 39 C CAQ 6EU . . . J 5 94.283 110.534 130.876 1 20 ? CAQ 6EU 804 A 1 
HETATM 40 C CAY 6EU . . . J 5 95.361 109.485 131.135 1 20 ? CAY 6EU 804 A 1 
HETATM 41 C CBE 6EU . . . J 5 96.532 110.087 131.565 1 20 ? CBE 6EU 804 A 1 
HETATM 42 C CBG 6EU . . . J 5 96.814 110.161 132.919 1 20 ? CBG 6EU 804 A 1 
HETATM 43 C CBI 6EU . . . J 5 97.989 110.756 133.35 1 20 ? CBI 6EU 804 A 1 
HETATM 44 C CBL 6EU . . . J 5 98.88 111.279 132.428 1 20 ? CBL 6EU 804 A 1 
HETATM 45 C CBJ 6EU . . . J 5 98.6 111.202 131.075 1 20 ? CBJ 6EU 804 A 1 
HETATM 46 C CBH 6EU . . . J 5 97.425 110.605 130.644 1 20 ? CBH 6EU 804 A 1 
HETATM 47 H HBS 6EU . . . J 5 91.929 118.042 127.336 1 20 ? HBS 6EU 804 A 1 
HETATM 48 H HAI 6EU . . . J 5 90.305 117.67 123.157 1 20 ? HAI 6EU 804 A 1 
HETATM 49 H HBU 6EU . . . J 5 93.681 118.566 122.722 1 20 ? HBU 6EU 804 A 1 
HETATM 50 H HBT 6EU . . . J 5 95.234 118.542 124.652 1 20 ? HBT 6EU 804 A 1 
HETATM 51 H HAD 6EU . . . J 5 91.624 114.705 132.069 1 20 ? HAD 6EU 804 A 1 
HETATM 52 H HBL 6EU . . . J 5 96.113 109.75 133.645 1 20 ? HBL 6EU 804 A 1 
HETATM 53 H HBN 6EU . . . J 5 98.209 110.816 134.414 1 20 ? HBN 6EU 804 A 1 
HETATM 54 H HBP 6EU . . . J 5 99.803 111.748 132.766 1 20 ? HBP 6EU 804 A 1 
HETATM 55 H HBO 6EU . . . J 5 99.301 111.613 130.351 1 20 ? HBO 6EU 804 A 1 
HETATM 56 H HBM 6EU . . . J 5 97.205 110.546 129.58 1 20 ? HBM 6EU 804 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           56 
#