data_5IRZ
#
_model_server_result.job_id            KXhMsfk7_B9RSifLvf5rLA 
_model_server_result.datetime_utc      '2025-09-04 15:14:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":801}' 
#
_entry.id    5IRZ 
#
_exptl.entry_id    5IRZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              440.489 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 K N N 
? 2 Q N N 
? 2 W N N 
#
_chem_comp.formula           'C19 H39 N O8 P 1' 
_chem_comp.formula_weight    440.489 
_chem_comp.id                6O8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 N18 6O8 sing 84 n n 
C20 N18 6O8 sing 85 n n 
O14 P12 6O8 doub 86 n n 
N18 C17 6O8 sing 87 n n 
N18 C19 6O8 sing 88 n n 
C17 C16 6O8 sing 89 n n 
O13 P12 6O8 sing 90 n n 
P12 O11 6O8 sing 91 n n 
P12 O15 6O8 sing 92 n n 
O06 C05 6O8 doub 93 n n 
C16 O15 6O8 sing 94 n n 
O11 C10 6O8 sing 95 n n 
C05 O07 6O8 sing 96 n n 
C05 C04 6O8 sing 97 n n 
C10 C09 6O8 sing 98 n n 
O07 C08 6O8 sing 99 n n 
C04 C03 6O8 sing 100 n n 
C09 C08 6O8 sing 101 n n 
C09 O22 6O8 sing 102 n n 
C03 C02 6O8 sing 103 n n 
C02 C01 6O8 sing 104 n n 
O22 C23 6O8 sing 105 n n 
C23 O24 6O8 doub 106 n n 
C23 C25 6O8 sing 107 n n 
C25 C26 6O8 sing 108 n n 
C26 C27 6O8 sing 109 n n 
C27 C28 6O8 sing 110 n n 
C28 C29 6O8 sing 111 n n 
C01 H011 6O8 sing 112 n n 
C01 H012 6O8 sing 113 n n 
C01 H1 6O8 sing 114 n n 
C02 H022 6O8 sing 115 n n 
C02 H021 6O8 sing 116 n n 
C03 H031 6O8 sing 117 n n 
C03 H032 6O8 sing 118 n n 
C04 H041 6O8 sing 119 n n 
C04 H042 6O8 sing 120 n n 
C08 H081 6O8 sing 121 n n 
C08 H082 6O8 sing 122 n n 
C09 H091 6O8 sing 123 n n 
C10 H102 6O8 sing 124 n n 
C10 H101 6O8 sing 125 n n 
O13 H2 6O8 sing 126 n n 
C16 H162 6O8 sing 127 n n 
C16 H161 6O8 sing 128 n n 
C17 H171 6O8 sing 129 n n 
C17 H172 6O8 sing 130 n n 
C19 H193 6O8 sing 131 n n 
C19 H191 6O8 sing 132 n n 
C19 H192 6O8 sing 133 n n 
C20 H202 6O8 sing 134 n n 
C20 H203 6O8 sing 135 n n 
C20 H201 6O8 sing 136 n n 
C21 H213 6O8 sing 137 n n 
C21 H212 6O8 sing 138 n n 
C21 H211 6O8 sing 139 n n 
C25 H252 6O8 sing 140 n n 
C25 H251 6O8 sing 141 n n 
C26 H262 6O8 sing 142 n n 
C26 H261 6O8 sing 143 n n 
C27 H272 6O8 sing 144 n n 
C27 H271 6O8 sing 145 n n 
C28 H281 6O8 sing 146 n n 
C28 H282 6O8 sing 147 n n 
C29 H291 6O8 sing 148 n n 
C29 H292 6O8 sing 149 n n 
C29 H3 6O8 sing 150 n n 
#
_atom_sites.entry_id                     5IRZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6O8 D 1 801 2 6O8 LPA . 
F 3 6ES D 1 802 21 6ES LPC . 
G 4 6OE D 1 803 25 6OE LPB . 
H 4 6OE D 1 804 30 6OE LPB . 
I 4 6OE D 1 805 39 6OE LPB . 
J 4 6OE D 1 806 40 6OE LPB . 
K 2 6O8 E 1 801 20 6O8 LPA . 
L 3 6ES E 1 802 24 6ES LPC . 
M 4 6OE E 1 803 26 6OE LPB . 
N 4 6OE E 1 804 35 6OE LPB . 
O 4 6OE E 1 805 36 6OE LPB . 
P 4 6OE E 1 806 37 6OE LPB . 
Q 2 6O8 B 1 801 8 6O8 LPA . 
R 3 6ES B 1 802 22 6ES LPC . 
S 4 6OE B 1 803 27 6OE LPB . 
T 4 6OE B 1 804 28 6OE LPB . 
U 4 6OE B 1 805 29 6OE LPB . 
V 4 6OE B 1 806 34 6OE LPB . 
W 2 6O8 C 1 801 14 6O8 LPA . 
X 3 6ES C 1 802 23 6ES LPC . 
Y 4 6OE C 1 803 31 6OE LPB . 
Z 4 6OE C 1 804 32 6OE LPB . 
AA 4 6OE C 1 805 33 6OE LPB . 
BA 4 6OE C 1 806 38 6OE LPB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 6O8 . . . K 2 71.66 119.201 101.28 1 20 ? C01 6O8 801 E 1 
HETATM 2 C C02 6O8 . . . K 2 72.432 117.908 101.537 1 20 ? C02 6O8 801 E 1 
HETATM 3 C C03 6O8 . . . K 2 73.733 118.118 102.295 1 20 ? C03 6O8 801 E 1 
HETATM 4 C C04 6O8 . . . K 2 74.304 116.807 102.798 1 20 ? C04 6O8 801 E 1 
HETATM 5 C C05 6O8 . . . K 2 75.529 117.008 103.667 1 20 ? C05 6O8 801 E 1 
HETATM 6 O O06 6O8 . . . K 2 75.75 116.261 104.552 1 20 ? O06 6O8 801 E 1 
HETATM 7 O O07 6O8 . . . K 2 76.394 118.063 103.404 1 20 ? O07 6O8 801 E 1 
HETATM 8 C C08 6O8 . . . K 2 77.084 117.861 102.216 1 20 ? C08 6O8 801 E 1 
HETATM 9 C C09 6O8 . . . K 2 78.512 118.314 102.407 1 20 ? C09 6O8 801 E 1 
HETATM 10 C C10 6O8 . . . K 2 79.087 117.618 103.606 1 20 ? C10 6O8 801 E 1 
HETATM 11 O O11 6O8 . . . K 2 80.234 118.288 103.991 1 20 ? O11 6O8 801 E 1 
HETATM 12 P P12 6O8 . . . K 2 79.948 119.61 104.895 1 20 ? P12 6O8 801 E 1 
HETATM 13 O O13 6O8 . . . K 2 78.474 119.823 105.053 1 20 ? O13 6O8 801 E 1 
HETATM 14 O O14 6O8 . . . K 2 80.602 119.455 106.239 1 20 ? O14 6O8 801 E 1 
HETATM 15 O O15 6O8 . . . K 2 80.584 120.878 104.115 1 20 ? O15 6O8 801 E 1 
HETATM 16 C C16 6O8 . . . K 2 81.821 121.19 104.619 1 20 ? C16 6O8 801 E 1 
HETATM 17 C C17 6O8 . . . K 2 81.572 122.27 105.63 1 20 ? C17 6O8 801 E 1 
HETATM 18 N N18 6O8 . . . K 2 82.782 122.872 106.074 1 20 ? N18 6O8 801 E 1 
HETATM 19 C C19 6O8 . . . K 2 83.434 123.506 104.994 1 20 ? C19 6O8 801 E 1 
HETATM 20 C C20 6O8 . . . K 2 83.642 121.905 106.653 1 20 ? C20 6O8 801 E 1 
HETATM 21 C C21 6O8 . . . K 2 82.494 123.895 107.013 1 20 ? C21 6O8 801 E 1 
HETATM 22 O O22 6O8 . . . K 2 79.213 117.934 101.271 1 20 ? O22 6O8 801 E 1 
HETATM 23 C C23 6O8 . . . K 2 78.775 118.619 100.142 1 20 ? C23 6O8 801 E 1 
HETATM 24 O O24 6O8 . . . K 2 79.05 119.74 99.977 1 20 ? O24 6O8 801 E 1 
HETATM 25 C C25 6O8 . . . K 2 77.891 117.958 99.119 1 20 ? C25 6O8 801 E 1 
HETATM 26 C C26 6O8 . . . K 2 77.02 118.957 98.387 1 20 ? C26 6O8 801 E 1 
HETATM 27 C C27 6O8 . . . K 2 76.113 118.28 97.373 1 20 ? C27 6O8 801 E 1 
HETATM 28 C C28 6O8 . . . K 2 74.862 119.099 97.089 1 20 ? C28 6O8 801 E 1 
HETATM 29 C C29 6O8 . . . K 2 73.79 118.311 96.351 1 20 ? C29 6O8 801 E 1 
HETATM 30 H H011 6O8 . . . K 2 71.588 119.703 102.106 1 20 ? H011 6O8 801 E 1 
HETATM 31 H H012 6O8 . . . K 2 72.128 119.731 100.62 1 20 ? H012 6O8 801 E 1 
HETATM 32 H H022 6O8 . . . K 2 71.877 117.318 102.061 1 20 ? H022 6O8 801 E 1 
HETATM 33 H H021 6O8 . . . K 2 72.63 117.478 100.694 1 20 ? H021 6O8 801 E 1 
HETATM 34 H H031 6O8 . . . K 2 73.571 118.694 103.05 1 20 ? H031 6O8 801 E 1 
HETATM 35 H H032 6O8 . . . K 2 74.382 118.531 101.714 1 20 ? H032 6O8 801 E 1 
HETATM 36 H H041 6O8 . . . K 2 73.631 116.348 103.313 1 20 ? H041 6O8 801 E 1 
HETATM 37 H H042 6O8 . . . K 2 74.544 116.268 102.036 1 20 ? H042 6O8 801 E 1 
HETATM 38 H H081 6O8 . . . K 2 77.08 116.92 102.005 1 20 ? H081 6O8 801 E 1 
HETATM 39 H H082 6O8 . . . K 2 76.661 118.358 101.51 1 20 ? H082 6O8 801 E 1 
HETATM 40 H H091 6O8 . . . K 2 78.571 119.266 102.533 1 20 ? H091 6O8 801 E 1 
HETATM 41 H H102 6O8 . . . K 2 78.444 117.65 104.32 1 20 ? H102 6O8 801 E 1 
HETATM 42 H H101 6O8 . . . K 2 79.276 116.704 103.387 1 20 ? H101 6O8 801 E 1 
HETATM 43 H H162 6O8 . . . K 2 82.187 120.417 105.055 1 20 ? H162 6O8 801 E 1 
HETATM 44 H H161 6O8 . . . K 2 82.398 121.5 103.921 1 20 ? H161 6O8 801 E 1 
HETATM 45 H H171 6O8 . . . K 2 81.118 121.874 106.377 1 20 ? H171 6O8 801 E 1 
HETATM 46 H H172 6O8 . . . K 2 81.029 122.951 105.233 1 20 ? H172 6O8 801 E 1 
HETATM 47 H H193 6O8 . . . K 2 84.089 124.106 105.36 1 20 ? H193 6O8 801 E 1 
HETATM 48 H H191 6O8 . . . K 2 83.854 122.844 104.44 1 20 ? H191 6O8 801 E 1 
HETATM 49 H H192 6O8 . . . K 2 82.769 123.986 104.495 1 20 ? H192 6O8 801 E 1 
HETATM 50 H H202 6O8 . . . K 2 83.116 121.321 107.205 1 20 ? H202 6O8 801 E 1 
HETATM 51 H H203 6O8 . . . K 2 84.316 122.346 107.18 1 20 ? H203 6O8 801 E 1 
HETATM 52 H H201 6O8 . . . K 2 84.055 121.4 105.95 1 20 ? H201 6O8 801 E 1 
HETATM 53 H H213 6O8 . . . K 2 81.949 123.524 107.714 1 20 ? H213 6O8 801 E 1 
HETATM 54 H H212 6O8 . . . K 2 83.323 124.233 107.369 1 20 ? H212 6O8 801 E 1 
HETATM 55 H H211 6O8 . . . K 2 82.021 124.595 106.551 1 20 ? H211 6O8 801 E 1 
HETATM 56 H H252 6O8 . . . K 2 77.335 117.317 99.572 1 20 ? H252 6O8 801 E 1 
HETATM 57 H H251 6O8 . . . K 2 78.442 117.512 98.474 1 20 ? H251 6O8 801 E 1 
HETATM 58 H H262 6O8 . . . K 2 76.483 119.438 99.023 1 20 ? H262 6O8 801 E 1 
HETATM 59 H H261 6O8 . . . K 2 77.586 119.583 97.93 1 20 ? H261 6O8 801 E 1 
HETATM 60 H H272 6O8 . . . K 2 75.856 117.416 97.708 1 20 ? H272 6O8 801 E 1 
HETATM 61 H H271 6O8 . . . K 2 76.598 118.152 96.551 1 20 ? H271 6O8 801 E 1 
HETATM 62 H H281 6O8 . . . K 2 74.494 119.411 97.926 1 20 ? H281 6O8 801 E 1 
HETATM 63 H H282 6O8 . . . K 2 75.107 119.863 96.55 1 20 ? H282 6O8 801 E 1 
HETATM 64 H H291 6O8 . . . K 2 73.448 117.61 96.922 1 20 ? H291 6O8 801 E 1 
HETATM 65 H H292 6O8 . . . K 2 74.179 117.912 95.561 1 20 ? H292 6O8 801 E 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           375 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           65 
#