data_5IRZ
#
_model_server_result.job_id            en0csfTnMnmKC2gYZ398dQ 
_model_server_result.datetime_utc      '2024-10-28 02:33:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":801}' 
#
_entry.id    5IRZ 
#
_exptl.entry_id    5IRZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              440.489 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 K N N 
? 2 Q N N 
? 2 W N N 
#
_chem_comp.formula           'C19 H39 N O8 P 1' 
_chem_comp.formula_weight    440.489 
_chem_comp.id                6O8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R,7S)-4-hydroxy-N,N,N-trimethyl-4,9-dioxo-7-[(pentanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphatetradecan-1-aminium 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 N18 6O8 sing 84 n n 
C20 N18 6O8 sing 85 n n 
O14 P12 6O8 doub 86 n n 
N18 C17 6O8 sing 87 n n 
N18 C19 6O8 sing 88 n n 
C17 C16 6O8 sing 89 n n 
O13 P12 6O8 sing 90 n n 
P12 O11 6O8 sing 91 n n 
P12 O15 6O8 sing 92 n n 
O06 C05 6O8 doub 93 n n 
C16 O15 6O8 sing 94 n n 
O11 C10 6O8 sing 95 n n 
C05 O07 6O8 sing 96 n n 
C05 C04 6O8 sing 97 n n 
C10 C09 6O8 sing 98 n n 
O07 C08 6O8 sing 99 n n 
C04 C03 6O8 sing 100 n n 
C09 C08 6O8 sing 101 n n 
C09 O22 6O8 sing 102 n n 
C03 C02 6O8 sing 103 n n 
C02 C01 6O8 sing 104 n n 
O22 C23 6O8 sing 105 n n 
C23 O24 6O8 doub 106 n n 
C23 C25 6O8 sing 107 n n 
C25 C26 6O8 sing 108 n n 
C26 C27 6O8 sing 109 n n 
C27 C28 6O8 sing 110 n n 
C28 C29 6O8 sing 111 n n 
C01 H011 6O8 sing 112 n n 
C01 H012 6O8 sing 113 n n 
C01 H1 6O8 sing 114 n n 
C02 H022 6O8 sing 115 n n 
C02 H021 6O8 sing 116 n n 
C03 H031 6O8 sing 117 n n 
C03 H032 6O8 sing 118 n n 
C04 H041 6O8 sing 119 n n 
C04 H042 6O8 sing 120 n n 
C08 H081 6O8 sing 121 n n 
C08 H082 6O8 sing 122 n n 
C09 H091 6O8 sing 123 n n 
C10 H102 6O8 sing 124 n n 
C10 H101 6O8 sing 125 n n 
O13 H2 6O8 sing 126 n n 
C16 H162 6O8 sing 127 n n 
C16 H161 6O8 sing 128 n n 
C17 H171 6O8 sing 129 n n 
C17 H172 6O8 sing 130 n n 
C19 H193 6O8 sing 131 n n 
C19 H191 6O8 sing 132 n n 
C19 H192 6O8 sing 133 n n 
C20 H202 6O8 sing 134 n n 
C20 H203 6O8 sing 135 n n 
C20 H201 6O8 sing 136 n n 
C21 H213 6O8 sing 137 n n 
C21 H212 6O8 sing 138 n n 
C21 H211 6O8 sing 139 n n 
C25 H252 6O8 sing 140 n n 
C25 H251 6O8 sing 141 n n 
C26 H262 6O8 sing 142 n n 
C26 H261 6O8 sing 143 n n 
C27 H272 6O8 sing 144 n n 
C27 H271 6O8 sing 145 n n 
C28 H281 6O8 sing 146 n n 
C28 H282 6O8 sing 147 n n 
C29 H291 6O8 sing 148 n n 
C29 H292 6O8 sing 149 n n 
C29 H3 6O8 sing 150 n n 
#
_atom_sites.entry_id                     5IRZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6O8 D 1 801 2 6O8 LPA . 
F 3 6ES D 1 802 21 6ES LPC . 
G 4 6OE D 1 803 25 6OE LPB . 
H 4 6OE D 1 804 30 6OE LPB . 
I 4 6OE D 1 805 39 6OE LPB . 
J 4 6OE D 1 806 40 6OE LPB . 
K 2 6O8 E 1 801 20 6O8 LPA . 
L 3 6ES E 1 802 24 6ES LPC . 
M 4 6OE E 1 803 26 6OE LPB . 
N 4 6OE E 1 804 35 6OE LPB . 
O 4 6OE E 1 805 36 6OE LPB . 
P 4 6OE E 1 806 37 6OE LPB . 
Q 2 6O8 B 1 801 8 6O8 LPA . 
R 3 6ES B 1 802 22 6ES LPC . 
S 4 6OE B 1 803 27 6OE LPB . 
T 4 6OE B 1 804 28 6OE LPB . 
U 4 6OE B 1 805 29 6OE LPB . 
V 4 6OE B 1 806 34 6OE LPB . 
W 2 6O8 C 1 801 14 6O8 LPA . 
X 3 6ES C 1 802 23 6ES LPC . 
Y 4 6OE C 1 803 31 6OE LPB . 
Z 4 6OE C 1 804 32 6OE LPB . 
AA 4 6OE C 1 805 33 6OE LPB . 
BA 4 6OE C 1 806 38 6OE LPB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 6O8 . . . W 2 114.202 71.664 101.285 1 20 ? C01 6O8 801 C 1 
HETATM 2 C C02 6O8 . . . W 2 115.495 72.437 101.54 1 20 ? C02 6O8 801 C 1 
HETATM 3 C C03 6O8 . . . W 2 115.284 73.738 102.298 1 20 ? C03 6O8 801 C 1 
HETATM 4 C C04 6O8 . . . W 2 116.594 74.308 102.802 1 20 ? C04 6O8 801 C 1 
HETATM 5 C C05 6O8 . . . W 2 116.392 75.532 103.674 1 20 ? C05 6O8 801 C 1 
HETATM 6 O O06 6O8 . . . W 2 117.137 75.751 104.56 1 20 ? O06 6O8 801 C 1 
HETATM 7 O O07 6O8 . . . W 2 115.336 76.396 103.411 1 20 ? O07 6O8 801 C 1 
HETATM 8 C C08 6O8 . . . W 2 115.536 77.084 102.222 1 20 ? C08 6O8 801 C 1 
HETATM 9 C C09 6O8 . . . W 2 115.084 78.513 102.411 1 20 ? C09 6O8 801 C 1 
HETATM 10 C C10 6O8 . . . W 2 115.782 79.09 103.609 1 20 ? C10 6O8 801 C 1 
HETATM 11 O O11 6O8 . . . W 2 115.112 80.236 103.993 1 20 ? O11 6O8 801 C 1 
HETATM 12 P P12 6O8 . . . W 2 113.787 79.948 104.894 1 20 ? P12 6O8 801 C 1 
HETATM 13 O O13 6O8 . . . W 2 113.575 78.473 105.046 1 20 ? O13 6O8 801 C 1 
HETATM 14 O O14 6O8 . . . W 2 113.94 80.598 106.24 1 20 ? O14 6O8 801 C 1 
HETATM 15 O O15 6O8 . . . W 2 112.521 80.586 104.113 1 20 ? O15 6O8 801 C 1 
HETATM 16 C C16 6O8 . . . W 2 112.21 81.823 104.619 1 20 ? C16 6O8 801 C 1 
HETATM 17 C C17 6O8 . . . W 2 111.133 81.573 105.633 1 20 ? C17 6O8 801 C 1 
HETATM 18 N N18 6O8 . . . W 2 110.53 82.782 106.078 1 20 ? N18 6O8 801 C 1 
HETATM 19 C C19 6O8 . . . W 2 109.891 83.43 105 1 20 ? C19 6O8 801 C 1 
HETATM 20 C C20 6O8 . . . W 2 111.496 83.646 106.653 1 20 ? C20 6O8 801 C 1 
HETATM 21 C C21 6O8 . . . W 2 109.51 82.493 107.02 1 20 ? C21 6O8 801 C 1 
HETATM 22 O O22 6O8 . . . W 2 115.464 79.212 101.273 1 20 ? O22 6O8 801 C 1 
HETATM 23 C C23 6O8 . . . W 2 114.78 78.77 100.146 1 20 ? C23 6O8 801 C 1 
HETATM 24 O O24 6O8 . . . W 2 113.657 79.036 99.983 1 20 ? O24 6O8 801 C 1 
HETATM 25 C C25 6O8 . . . W 2 115.444 77.89 99.121 1 20 ? C25 6O8 801 C 1 
HETATM 26 C C26 6O8 . . . W 2 114.445 77.021 98.386 1 20 ? C26 6O8 801 C 1 
HETATM 27 C C27 6O8 . . . W 2 115.122 76.114 97.371 1 20 ? C27 6O8 801 C 1 
HETATM 28 C C28 6O8 . . . W 2 114.303 74.864 97.087 1 20 ? C28 6O8 801 C 1 
HETATM 29 C C29 6O8 . . . W 2 115.092 73.791 96.35 1 20 ? C29 6O8 801 C 1 
HETATM 30 H H011 6O8 . . . W 2 113.7 71.594 102.11 1 20 ? H011 6O8 801 C 1 
HETATM 31 H H012 6O8 . . . W 2 113.671 72.13 100.624 1 20 ? H012 6O8 801 C 1 
HETATM 32 H H022 6O8 . . . W 2 116.085 71.883 102.063 1 20 ? H022 6O8 801 C 1 
HETATM 33 H H021 6O8 . . . W 2 115.923 72.635 100.696 1 20 ? H021 6O8 801 C 1 
HETATM 34 H H031 6O8 . . . W 2 114.707 73.575 103.053 1 20 ? H031 6O8 801 C 1 
HETATM 35 H H032 6O8 . . . W 2 114.871 74.387 101.717 1 20 ? H032 6O8 801 C 1 
HETATM 36 H H041 6O8 . . . W 2 117.054 73.635 103.315 1 20 ? H041 6O8 801 C 1 
HETATM 37 H H042 6O8 . . . W 2 117.132 74.551 102.041 1 20 ? H042 6O8 801 C 1 
HETATM 38 H H081 6O8 . . . W 2 116.476 77.079 102.008 1 20 ? H081 6O8 801 C 1 
HETATM 39 H H082 6O8 . . . W 2 115.036 76.66 101.517 1 20 ? H082 6O8 801 C 1 
HETATM 40 H H091 6O8 . . . W 2 114.133 78.572 102.538 1 20 ? H091 6O8 801 C 1 
HETATM 41 H H102 6O8 . . . W 2 115.752 78.448 104.324 1 20 ? H102 6O8 801 C 1 
HETATM 42 H H101 6O8 . . . W 2 116.696 79.279 103.388 1 20 ? H101 6O8 801 C 1 
HETATM 43 H H162 6O8 . . . W 2 112.985 82.187 105.054 1 20 ? H162 6O8 801 C 1 
HETATM 44 H H161 6O8 . . . W 2 111.899 82.4 103.923 1 20 ? H161 6O8 801 C 1 
HETATM 45 H H171 6O8 . . . W 2 111.532 81.119 106.379 1 20 ? H171 6O8 801 C 1 
HETATM 46 H H172 6O8 . . . W 2 110.452 81.029 105.238 1 20 ? H172 6O8 801 C 1 
HETATM 47 H H193 6O8 . . . W 2 109.291 84.085 105.366 1 20 ? H193 6O8 801 C 1 
HETATM 48 H H191 6O8 . . . W 2 110.549 83.85 104.441 1 20 ? H191 6O8 801 C 1 
HETATM 49 H H192 6O8 . . . W 2 109.409 82.763 104.504 1 20 ? H192 6O8 801 C 1 
HETATM 50 H H202 6O8 . . . W 2 112.082 83.123 107.206 1 20 ? H202 6O8 801 C 1 
HETATM 51 H H203 6O8 . . . W 2 111.055 84.321 107.177 1 20 ? H203 6O8 801 C 1 
HETATM 52 H H201 6O8 . . . W 2 112 84.056 105.948 1 20 ? H201 6O8 801 C 1 
HETATM 53 H H213 6O8 . . . W 2 109.884 81.949 107.721 1 20 ? H213 6O8 801 C 1 
HETATM 54 H H212 6O8 . . . W 2 109.172 83.322 107.376 1 20 ? H212 6O8 801 C 1 
HETATM 55 H H211 6O8 . . . W 2 108.81 82.018 106.56 1 20 ? H211 6O8 801 C 1 
HETATM 56 H H252 6O8 . . . W 2 116.085 77.333 99.573 1 20 ? H252 6O8 801 C 1 
HETATM 57 H H251 6O8 . . . W 2 115.889 78.444 98.478 1 20 ? H251 6O8 801 C 1 
HETATM 58 H H262 6O8 . . . W 2 113.963 76.483 99.021 1 20 ? H262 6O8 801 C 1 
HETATM 59 H H261 6O8 . . . W 2 113.82 77.588 97.929 1 20 ? H261 6O8 801 C 1 
HETATM 60 H H272 6O8 . . . W 2 115.987 75.858 97.706 1 20 ? H272 6O8 801 C 1 
HETATM 61 H H271 6O8 . . . W 2 115.249 76.6 96.549 1 20 ? H271 6O8 801 C 1 
HETATM 62 H H281 6O8 . . . W 2 113.991 74.496 97.924 1 20 ? H281 6O8 801 C 1 
HETATM 63 H H282 6O8 . . . W 2 113.54 75.108 96.547 1 20 ? H282 6O8 801 C 1 
HETATM 64 H H291 6O8 . . . W 2 115.79 73.447 96.923 1 20 ? H291 6O8 801 C 1 
HETATM 65 H H292 6O8 . . . W 2 115.495 74.181 95.563 1 20 ? H292 6O8 801 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           65 
#