data_5IRZ
#
_model_server_result.job_id            YDNuS1qFnT5Nr_GxwAT5Ew 
_model_server_result.datetime_utc      '2024-10-28 02:27:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5irz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":806}' 
#
_entry.id    5IRZ 
#
_exptl.entry_id    5IRZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              411.428 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IRZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IRZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
#
_chem_comp.formula           'C17 H34 N O8 P' 
_chem_comp.formula_weight    411.428 
_chem_comp.id                6OE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(hexanoyloxy)propyl hexanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 6OE sing 151 n n 
C17 C16 6OE sing 152 n n 
C16 C15 6OE sing 153 n n 
C26 C25 6OE sing 154 n n 
C15 C14 6OE sing 155 n n 
C24 C25 6OE sing 156 n n 
C24 C23 6OE sing 157 n n 
C22 C23 6OE sing 158 n n 
C22 C21 6OE sing 159 n n 
C14 C13 6OE sing 160 n n 
O19 C13 6OE doub 161 n n 
O27 C21 6OE doub 162 n n 
C13 O12 6OE sing 163 n n 
C21 O20 6OE sing 164 n n 
C11 O12 6OE sing 165 n n 
C11 C10 6OE sing 166 n n 
O20 C10 6OE sing 167 n n 
C10 C09 6OE sing 168 n n 
C09 O08 6OE sing 169 n n 
O08 P05 6OE sing 170 n n 
O04 P05 6OE sing 171 n n 
O04 C03 6OE sing 172 n n 
P05 O07 6OE doub 173 n n 
P05 O06 6OE sing 174 n n 
C02 C03 6OE sing 175 n n 
C02 N01 6OE sing 176 n n 
N01 H011 6OE sing 177 n n 
N01 H012 6OE sing 178 n n 
C02 H022 6OE sing 179 n n 
C02 H021 6OE sing 180 n n 
C03 H032 6OE sing 181 n n 
C03 H031 6OE sing 182 n n 
O06 H2 6OE sing 183 n n 
C09 H092 6OE sing 184 n n 
C09 H091 6OE sing 185 n n 
C10 H101 6OE sing 186 n n 
C11 H112 6OE sing 187 n n 
C11 H111 6OE sing 188 n n 
C14 H142 6OE sing 189 n n 
C14 H141 6OE sing 190 n n 
C15 H151 6OE sing 191 n n 
C15 H152 6OE sing 192 n n 
C16 H161 6OE sing 193 n n 
C16 H162 6OE sing 194 n n 
C17 H172 6OE sing 195 n n 
C17 H171 6OE sing 196 n n 
C18 H181 6OE sing 197 n n 
C18 H182 6OE sing 198 n n 
C18 H3 6OE sing 199 n n 
C22 H222 6OE sing 200 n n 
C22 H221 6OE sing 201 n n 
C23 H231 6OE sing 202 n n 
C23 H232 6OE sing 203 n n 
C24 H242 6OE sing 204 n n 
C24 H241 6OE sing 205 n n 
C25 H252 6OE sing 206 n n 
C25 H251 6OE sing 207 n n 
C26 H262 6OE sing 208 n n 
C26 H261 6OE sing 209 n n 
C26 H4 6OE sing 210 n n 
#
_atom_sites.entry_id                     5IRZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6O8 D 1 801 2 6O8 LPA . 
F 3 6ES D 1 802 21 6ES LPC . 
G 4 6OE D 1 803 25 6OE LPB . 
H 4 6OE D 1 804 30 6OE LPB . 
I 4 6OE D 1 805 39 6OE LPB . 
J 4 6OE D 1 806 40 6OE LPB . 
K 2 6O8 E 1 801 20 6O8 LPA . 
L 3 6ES E 1 802 24 6ES LPC . 
M 4 6OE E 1 803 26 6OE LPB . 
N 4 6OE E 1 804 35 6OE LPB . 
O 4 6OE E 1 805 36 6OE LPB . 
P 4 6OE E 1 806 37 6OE LPB . 
Q 2 6O8 B 1 801 8 6O8 LPA . 
R 3 6ES B 1 802 22 6ES LPC . 
S 4 6OE B 1 803 27 6OE LPB . 
T 4 6OE B 1 804 28 6OE LPB . 
U 4 6OE B 1 805 29 6OE LPB . 
V 4 6OE B 1 806 34 6OE LPB . 
W 2 6O8 C 1 801 14 6O8 LPA . 
X 3 6ES C 1 802 23 6ES LPC . 
Y 4 6OE C 1 803 31 6OE LPB . 
Z 4 6OE C 1 804 32 6OE LPB . 
AA 4 6OE C 1 805 33 6OE LPB . 
BA 4 6OE C 1 806 38 6OE LPB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 6OE . . . V 4 93.471 94.527 77.51 1 20 ? N01 6OE 806 B 1 
HETATM 2 C C02 6OE . . . V 4 94.623 95.403 77.46 1 20 ? C02 6OE 806 B 1 
HETATM 3 C C03 6OE . . . V 4 95.406 95.165 76.175 1 20 ? C03 6OE 806 B 1 
HETATM 4 O O04 6OE . . . V 4 96.683 95.711 76.339 1 20 ? O04 6OE 806 B 1 
HETATM 5 P P05 6OE . . . V 4 97.821 94.805 77.107 1 20 ? P05 6OE 806 B 1 
HETATM 6 O O06 6OE . . . V 4 97.405 93.355 77.097 1 20 ? O06 6OE 806 B 1 
HETATM 7 O O07 6OE . . . V 4 99.145 94.95 76.403 1 20 ? O07 6OE 806 B 1 
HETATM 8 O O08 6OE . . . V 4 97.951 95.315 78.668 1 20 ? O08 6OE 806 B 1 
HETATM 9 C C09 6OE . . . V 4 98.86 94.661 79.506 1 20 ? C09 6OE 806 B 1 
HETATM 10 C C10 6OE . . . V 4 98.121 94.102 80.715 1 20 ? C10 6OE 806 B 1 
HETATM 11 C C11 6OE . . . V 4 96.758 94.749 80.884 1 20 ? C11 6OE 806 B 1 
HETATM 12 O O12 6OE . . . V 4 96.913 96.134 80.779 1 20 ? O12 6OE 806 B 1 
HETATM 13 C C13 6OE . . . V 4 95.841 96.858 81.305 1 20 ? C13 6OE 806 B 1 
HETATM 14 C C14 6OE . . . V 4 96.108 98.086 82.169 1 20 ? C14 6OE 806 B 1 
HETATM 15 C C15 6OE . . . V 4 95.038 98.28 83.232 1 20 ? C15 6OE 806 B 1 
HETATM 16 C C16 6OE . . . V 4 95.591 98.714 84.586 1 20 ? C16 6OE 806 B 1 
HETATM 17 C C17 6OE . . . V 4 96.107 97.554 85.429 1 20 ? C17 6OE 806 B 1 
HETATM 18 C C18 6OE . . . V 4 96.476 97.975 86.852 1 20 ? C18 6OE 806 B 1 
HETATM 19 O O19 6OE . . . V 4 94.728 96.518 81.083 1 20 ? O19 6OE 806 B 1 
HETATM 20 O O20 6OE . . . V 4 98.881 94.389 81.849 1 20 ? O20 6OE 806 B 1 
HETATM 21 C C21 6OE . . . V 4 98.713 93.497 82.911 1 20 ? C21 6OE 806 B 1 
HETATM 22 C C22 6OE . . . V 4 98.309 94.049 84.273 1 20 ? C22 6OE 806 B 1 
HETATM 23 C C23 6OE . . . V 4 98.838 93.233 85.44 1 20 ? C23 6OE 806 B 1 
HETATM 24 C C24 6OE . . . V 4 98.784 94.027 86.744 1 20 ? C24 6OE 806 B 1 
HETATM 25 C C25 6OE . . . V 4 98.77 93.155 87.996 1 20 ? C25 6OE 806 B 1 
HETATM 26 C C26 6OE . . . V 4 99.434 93.826 89.19 1 20 ? C26 6OE 806 B 1 
HETATM 27 O O27 6OE . . . V 4 98.889 92.337 82.759 1 20 ? O27 6OE 806 B 1 
HETATM 28 H H011 6OE . . . V 4 92.736 95.018 77.591 1 20 ? H011 6OE 806 B 1 
HETATM 29 H H012 6OE . . . V 4 93.544 93.987 78.212 1 20 ? H012 6OE 806 B 1 
HETATM 30 H H022 6OE . . . V 4 95.195 95.222 78.218 1 20 ? H022 6OE 806 B 1 
HETATM 31 H H021 6OE . . . V 4 94.325 96.325 77.494 1 20 ? H021 6OE 806 B 1 
HETATM 32 H H032 6OE . . . V 4 95.473 94.213 76.01 1 20 ? H032 6OE 806 B 1 
HETATM 33 H H031 6OE . . . V 4 94.957 95.596 75.432 1 20 ? H031 6OE 806 B 1 
HETATM 34 H H092 6OE . . . V 4 99.285 93.94 79.02 1 20 ? H092 6OE 806 B 1 
HETATM 35 H H091 6OE . . . V 4 99.526 95.295 79.81 1 20 ? H091 6OE 806 B 1 
HETATM 36 H H101 6OE . . . V 4 98.017 93.144 80.633 1 20 ? H101 6OE 806 B 1 
HETATM 37 H H112 6OE . . . V 4 96.398 94.52 81.751 1 20 ? H112 6OE 806 B 1 
HETATM 38 H H111 6OE . . . V 4 96.166 94.431 80.187 1 20 ? H111 6OE 806 B 1 
HETATM 39 H H142 6OE . . . V 4 96.962 97.979 82.607 1 20 ? H142 6OE 806 B 1 
HETATM 40 H H141 6OE . . . V 4 96.137 98.87 81.6 1 20 ? H141 6OE 806 B 1 
HETATM 41 H H151 6OE . . . V 4 94.559 97.447 83.344 1 20 ? H151 6OE 806 B 1 
HETATM 42 H H152 6OE . . . V 4 94.426 98.96 82.918 1 20 ? H152 6OE 806 B 1 
HETATM 43 H H161 6OE . . . V 4 94.892 99.167 85.077 1 20 ? H161 6OE 806 B 1 
HETATM 44 H H162 6OE . . . V 4 96.316 99.334 84.437 1 20 ? H162 6OE 806 B 1 
HETATM 45 H H172 6OE . . . V 4 95.426 96.87 85.469 1 20 ? H172 6OE 806 B 1 
HETATM 46 H H171 6OE . . . V 4 96.887 97.18 84.999 1 20 ? H171 6OE 806 B 1 
HETATM 47 H H181 6OE . . . V 4 95.734 98.442 87.258 1 20 ? H181 6OE 806 B 1 
HETATM 48 H H182 6OE . . . V 4 97.239 98.565 86.832 1 20 ? H182 6OE 806 B 1 
HETATM 49 H H222 6OE . . . V 4 97.346 94.074 84.328 1 20 ? H222 6OE 806 B 1 
HETATM 50 H H221 6OE . . . V 4 98.644 94.95 84.356 1 20 ? H221 6OE 806 B 1 
HETATM 51 H H231 6OE . . . V 4 99.75 92.978 85.251 1 20 ? H231 6OE 806 B 1 
HETATM 52 H H232 6OE . . . V 4 98.302 92.434 85.525 1 20 ? H232 6OE 806 B 1 
HETATM 53 H H242 6OE . . . V 4 99.557 94.602 86.791 1 20 ? H242 6OE 806 B 1 
HETATM 54 H H241 6OE . . . V 4 97.989 94.578 86.734 1 20 ? H241 6OE 806 B 1 
HETATM 55 H H252 6OE . . . V 4 97.853 92.962 88.232 1 20 ? H252 6OE 806 B 1 
HETATM 56 H H251 6OE . . . V 4 99.233 92.327 87.808 1 20 ? H251 6OE 806 B 1 
HETATM 57 H H262 6OE . . . V 4 99.168 94.754 89.219 1 20 ? H262 6OE 806 B 1 
HETATM 58 H H261 6OE . . . V 4 100.393 93.767 89.095 1 20 ? H261 6OE 806 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           58 
#