data_5IS7 # _model_server_result.job_id ljFmgbqLNGi9ab4q41LRvw _model_server_result.datetime_utc '2024-11-16 10:57:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5is7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 5IS7 # _exptl.entry_id 5IS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IS7 _cell.length_a 74.528 _cell.length_b 98.935 _cell.length_c 206.914 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 128 n n C1 C2 EDO sing 129 n n C1 H11 EDO sing 130 n n C1 H12 EDO sing 131 n n O1 HO1 EDO sing 132 n n C2 O2 EDO sing 133 n n C2 H21 EDO sing 134 n n C2 H22 EDO sing 135 n n O2 HO2 EDO sing 136 n n # _atom_sites.entry_id 5IS7 _atom_sites.fract_transf_matrix[1][1] 0.013418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 501 4 EDO EDO . F 3 PEG A 1 502 6 PEG PEG . G 3 PEG A 1 503 7 PEG PEG . H 4 DSH A 1 504 1 DSH DSH . I 2 EDO B 1 501 2 EDO EDO . J 2 EDO B 1 502 3 EDO EDO . K 4 DSH B 1 503 2 DSH DSH . L 2 EDO C 1 501 1 EDO EDO . M 4 DSH C 1 502 3 DSH DSH . N 2 EDO D 1 501 5 EDO EDO . O 4 DSH D 1 502 4 DSH DSH . P 5 HOH A 1 601 30 HOH HOH . P 5 HOH A 2 602 12 HOH HOH . P 5 HOH A 3 603 104 HOH HOH . P 5 HOH A 4 604 94 HOH HOH . P 5 HOH A 5 605 37 HOH HOH . P 5 HOH A 6 606 79 HOH HOH . P 5 HOH A 7 607 35 HOH HOH . P 5 HOH A 8 608 65 HOH HOH . P 5 HOH A 9 609 31 HOH HOH . P 5 HOH A 10 610 119 HOH HOH . P 5 HOH A 11 611 28 HOH HOH . P 5 HOH A 12 612 74 HOH HOH . P 5 HOH A 13 613 106 HOH HOH . P 5 HOH A 14 614 8 HOH HOH . P 5 HOH A 15 615 6 HOH HOH . P 5 HOH A 16 616 105 HOH HOH . P 5 HOH A 17 617 26 HOH HOH . P 5 HOH A 18 618 111 HOH HOH . P 5 HOH A 19 619 96 HOH HOH . P 5 HOH A 20 620 5 HOH HOH . P 5 HOH A 21 621 39 HOH HOH . P 5 HOH A 22 622 13 HOH HOH . P 5 HOH A 23 623 101 HOH HOH . P 5 HOH A 24 624 80 HOH HOH . P 5 HOH A 25 625 23 HOH HOH . P 5 HOH A 26 626 46 HOH HOH . P 5 HOH A 27 627 48 HOH HOH . P 5 HOH A 28 628 10 HOH HOH . P 5 HOH A 29 629 83 HOH HOH . P 5 HOH A 30 630 18 HOH HOH . P 5 HOH A 31 631 9 HOH HOH . P 5 HOH A 32 632 42 HOH HOH . P 5 HOH A 33 633 52 HOH HOH . P 5 HOH A 34 634 4 HOH HOH . P 5 HOH A 35 635 103 HOH HOH . P 5 HOH A 36 636 45 HOH HOH . P 5 HOH A 37 637 38 HOH HOH . P 5 HOH A 38 638 21 HOH HOH . P 5 HOH A 39 639 60 HOH HOH . P 5 HOH A 40 640 86 HOH HOH . P 5 HOH A 41 641 36 HOH HOH . P 5 HOH A 42 642 25 HOH HOH . P 5 HOH A 43 643 116 HOH HOH . P 5 HOH A 44 644 57 HOH HOH . P 5 HOH A 45 645 81 HOH HOH . P 5 HOH A 46 646 99 HOH HOH . P 5 HOH A 47 647 67 HOH HOH . P 5 HOH A 48 648 118 HOH HOH . P 5 HOH A 49 649 63 HOH HOH . P 5 HOH A 50 650 114 HOH HOH . P 5 HOH A 51 651 120 HOH HOH . P 5 HOH A 52 652 91 HOH HOH . P 5 HOH A 53 653 115 HOH HOH . P 5 HOH A 54 654 59 HOH HOH . P 5 HOH A 55 655 40 HOH HOH . P 5 HOH A 56 656 82 HOH HOH . P 5 HOH A 57 657 117 HOH HOH . P 5 HOH A 58 658 84 HOH HOH . P 5 HOH A 59 659 100 HOH HOH . P 5 HOH A 60 660 53 HOH HOH . P 5 HOH A 61 661 110 HOH HOH . Q 5 HOH B 1 601 2 HOH HOH . Q 5 HOH B 2 602 3 HOH HOH . Q 5 HOH B 3 603 108 HOH HOH . Q 5 HOH B 4 604 107 HOH HOH . Q 5 HOH B 5 605 44 HOH HOH . Q 5 HOH B 6 606 77 HOH HOH . Q 5 HOH B 7 607 24 HOH HOH . Q 5 HOH B 8 608 49 HOH HOH . Q 5 HOH B 9 609 43 HOH HOH . Q 5 HOH B 10 610 71 HOH HOH . Q 5 HOH B 11 611 1 HOH HOH . Q 5 HOH B 12 612 33 HOH HOH . Q 5 HOH B 13 613 14 HOH HOH . Q 5 HOH B 14 614 15 HOH HOH . Q 5 HOH B 15 615 7 HOH HOH . Q 5 HOH B 16 616 95 HOH HOH . Q 5 HOH B 17 617 51 HOH HOH . Q 5 HOH B 18 618 58 HOH HOH . Q 5 HOH B 19 619 27 HOH HOH . Q 5 HOH B 20 620 47 HOH HOH . Q 5 HOH B 21 621 70 HOH HOH . Q 5 HOH B 22 622 56 HOH HOH . Q 5 HOH B 23 623 32 HOH HOH . Q 5 HOH B 24 624 98 HOH HOH . Q 5 HOH B 25 625 19 HOH HOH . Q 5 HOH B 26 626 92 HOH HOH . Q 5 HOH B 27 627 90 HOH HOH . Q 5 HOH B 28 628 34 HOH HOH . Q 5 HOH B 29 629 62 HOH HOH . Q 5 HOH B 30 630 54 HOH HOH . Q 5 HOH B 31 631 22 HOH HOH . Q 5 HOH B 32 632 88 HOH HOH . Q 5 HOH B 33 633 66 HOH HOH . Q 5 HOH B 34 634 85 HOH HOH . Q 5 HOH B 35 635 29 HOH HOH . Q 5 HOH B 36 636 73 HOH HOH . Q 5 HOH B 37 637 61 HOH HOH . Q 5 HOH B 38 638 55 HOH HOH . Q 5 HOH B 39 639 41 HOH HOH . Q 5 HOH B 40 640 113 HOH HOH . Q 5 HOH B 41 641 102 HOH HOH . Q 5 HOH B 42 642 75 HOH HOH . Q 5 HOH B 43 643 69 HOH HOH . Q 5 HOH B 44 644 76 HOH HOH . R 5 HOH C 1 601 50 HOH HOH . R 5 HOH C 2 602 11 HOH HOH . R 5 HOH C 3 603 64 HOH HOH . R 5 HOH C 4 604 17 HOH HOH . R 5 HOH C 5 605 16 HOH HOH . R 5 HOH C 6 606 72 HOH HOH . R 5 HOH C 7 607 78 HOH HOH . R 5 HOH C 8 608 97 HOH HOH . R 5 HOH C 9 609 68 HOH HOH . R 5 HOH C 10 610 93 HOH HOH . R 5 HOH C 11 611 87 HOH HOH . S 5 HOH D 1 601 109 HOH HOH . S 5 HOH D 2 602 89 HOH HOH . S 5 HOH D 3 603 112 HOH HOH . S 5 HOH D 4 604 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 2 9.432 11.806 134.746 1 77.06 ? C1 EDO 501 B 1 HETATM 2 O O1 EDO . . . I 2 10.497 10.935 135.019 1 81.03 ? O1 EDO 501 B 1 HETATM 3 C C2 EDO . . . I 2 8.198 10.99 134.364 1 79.66 ? C2 EDO 501 B 1 HETATM 4 O O2 EDO . . . I 2 7.078 11.829 134.295 1 78.27 ? O2 EDO 501 B 1 HETATM 5 H H11 EDO . . . I 2 9.238 12.337 135.534 1 92.47 ? H11 EDO 501 B 1 HETATM 6 H H12 EDO . . . I 2 9.673 12.392 134.011 1 92.47 ? H12 EDO 501 B 1 HETATM 7 H HO1 EDO . . . I 2 10.5 10.742 135.847 1 97.24 ? HO1 EDO 501 B 1 HETATM 8 H H21 EDO . . . I 2 8.343 10.572 133.501 1 95.59 ? H21 EDO 501 B 1 HETATM 9 H H22 EDO . . . I 2 8.046 10.303 135.033 1 95.59 ? H22 EDO 501 B 1 HETATM 10 H HO2 EDO . . . I 2 6.377 11.382 134.473 1 93.93 ? HO2 EDO 501 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #