data_5ISI # _model_server_result.job_id -ynFYTFIZCPHxK5MDGVJsg _model_server_result.datetime_utc '2024-11-25 04:34:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5isi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 5ISI # _exptl.entry_id 5ISI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ISI _cell.length_a 74.736 _cell.length_b 98.522 _cell.length_c 207.054 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ISI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 J N N ? 3 L N N ? 3 O N N ? 3 P N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 133 n n C1 C2 EDO sing 134 n n C1 H11 EDO sing 135 n n C1 H12 EDO sing 136 n n O1 HO1 EDO sing 137 n n C2 O2 EDO sing 138 n n C2 H21 EDO sing 139 n n C2 H22 EDO sing 140 n n O2 HO2 EDO sing 141 n n # _atom_sites.entry_id 5ISI _atom_sites.fract_transf_matrix[1][1] 0.01338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 5N5 A 1 501 1 5N5 SA1 . F 3 EDO A 1 502 2 EDO EDO . G 4 DXE A 1 503 8 DXE DXE . H 2 5N5 B 1 501 2 5N5 SA1 . I 3 EDO B 1 502 1 EDO EDO . J 3 EDO B 1 503 5 EDO EDO . K 2 5N5 C 1 501 3 5N5 SA1 . L 3 EDO C 1 502 3 EDO EDO . M 4 DXE C 1 503 7 DXE DXE . N 2 5N5 D 1 501 4 5N5 SA1 . O 3 EDO D 1 502 4 EDO EDO . P 3 EDO D 1 503 6 EDO EDO . Q 5 HOH A 1 601 5 HOH HOH . Q 5 HOH A 2 602 15 HOH HOH . Q 5 HOH A 3 603 4 HOH HOH . Q 5 HOH A 4 604 9 HOH HOH . Q 5 HOH A 5 605 11 HOH HOH . Q 5 HOH A 6 606 13 HOH HOH . R 5 HOH B 1 601 6 HOH HOH . R 5 HOH B 2 602 1 HOH HOH . S 5 HOH C 1 601 7 HOH HOH . S 5 HOH C 2 602 3 HOH HOH . S 5 HOH C 3 603 8 HOH HOH . S 5 HOH C 4 604 14 HOH HOH . S 5 HOH C 5 605 12 HOH HOH . S 5 HOH C 6 606 10 HOH HOH . T 5 HOH D 1 601 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 4.271 24.498 179.097 1 68.55 ? C1 EDO 502 C 1 HETATM 2 O O1 EDO . . . L 3 4.701 25.495 179.983 1 67.47 ? O1 EDO 502 C 1 HETATM 3 C C2 EDO . . . L 3 5.446 24.12 178.197 1 70.24 ? C2 EDO 502 C 1 HETATM 4 O O2 EDO . . . L 3 6.636 24.344 178.905 1 69.86 ? O2 EDO 502 C 1 HETATM 5 H H11 EDO . . . L 3 3.977 23.72 179.596 1 82.26 ? H11 EDO 502 C 1 HETATM 6 H H12 EDO . . . L 3 3.539 24.834 178.556 1 82.26 ? H12 EDO 502 C 1 HETATM 7 H HO1 EDO . . . L 3 4.199 25.501 180.669 1 80.97 ? HO1 EDO 502 C 1 HETATM 8 H H21 EDO . . . L 3 5.383 23.183 177.953 1 84.29 ? H21 EDO 502 C 1 HETATM 9 H H22 EDO . . . L 3 5.434 24.667 177.396 1 84.29 ? H22 EDO 502 C 1 HETATM 10 H HO2 EDO . . . L 3 7.283 23.974 178.497 1 83.83 ? HO2 EDO 502 C 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #