data_5ISO
#
_model_server_result.job_id            tPkKGYOqqbABcUSbgWxM9Q 
_model_server_result.datetime_utc      '2024-10-19 03:48:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iso 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":403}' 
#
_entry.id    5ISO 
#
_exptl.entry_id    5ISO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.73 
_cell.angle_gamma         90 
_cell.entry_id            5ISO 
_cell.length_a            75.42 
_cell.length_b            129.39 
_cell.length_c            139.28 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ISO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,Q,R,S 1 1 
D,E,F,L,M,N,O,P,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ARG 123 B ARG 107 1_555 B N SEP 124 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C SEP 124 B SEP 108 1_555 B N HIS 125 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 E C ARG 123 D ARG 107 1_555 E N SEP 124 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 E C SEP 124 D SEP 108 1_555 E N HIS 125 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 66 n n 
P O2P AMP sing 67 n n 
P O3P AMP sing 68 n n 
P O5' AMP sing 69 n n 
O2P HOP2 AMP sing 70 n n 
O3P HOP3 AMP sing 71 n n 
O5' C5' AMP sing 72 n n 
C5' C4' AMP sing 73 n n 
C5' "H5'1" AMP sing 74 n n 
C5' "H5'2" AMP sing 75 n n 
C4' O4' AMP sing 76 n n 
C4' C3' AMP sing 77 n n 
C4' H4' AMP sing 78 n n 
O4' C1' AMP sing 79 n n 
C3' O3' AMP sing 80 n n 
C3' C2' AMP sing 81 n n 
C3' H3' AMP sing 82 n n 
O3' HO3' AMP sing 83 n n 
C2' O2' AMP sing 84 n n 
C2' C1' AMP sing 85 n n 
C2' H2' AMP sing 86 n n 
O2' HO2' AMP sing 87 n n 
C1' N9 AMP sing 88 n n 
C1' H1' AMP sing 89 n n 
N9 C8 AMP sing 90 n y 
N9 C4 AMP sing 91 n y 
C8 N7 AMP doub 92 n y 
C8 H8 AMP sing 93 n n 
N7 C5 AMP sing 94 n y 
C5 C6 AMP sing 95 n y 
C5 C4 AMP doub 96 n y 
C6 N6 AMP sing 97 n n 
C6 N1 AMP doub 98 n y 
N6 HN61 AMP sing 99 n n 
N6 HN62 AMP sing 100 n n 
N1 C2 AMP sing 101 n y 
C2 N3 AMP doub 102 n y 
C2 H2 AMP sing 103 n n 
N3 C4 AMP sing 104 n y 
#
_atom_sites.entry_id                     5ISO 
_atom_sites.fract_transf_matrix[1][1]    0.013259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000632 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007188 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 STU A 1 601 1 STU STU . 
H 5 992 A 1 602 1 992 991 . 
I 6 AMP E 1 401 1 AMP AMP . 
J 6 AMP E 1 402 3 AMP AMP . 
K 6 AMP E 1 403 4 AMP AMP . 
L 4 STU C 1 601 1 STU STU . 
M 5 992 C 1 602 1 992 991 . 
N 6 AMP F 1 401 1 AMP AMP . 
O 6 AMP F 1 402 3 AMP AMP . 
P 6 AMP F 1 403 4 AMP AMP . 
Q 7 HOH A 1 701 46 HOH HOH . 
Q 7 HOH A 2 702 74 HOH HOH . 
Q 7 HOH A 3 703 75 HOH HOH . 
Q 7 HOH A 4 704 67 HOH HOH . 
Q 7 HOH A 5 705 71 HOH HOH . 
Q 7 HOH A 6 706 36 HOH HOH . 
Q 7 HOH A 7 707 45 HOH HOH . 
Q 7 HOH A 8 708 31 HOH HOH . 
Q 7 HOH A 9 709 35 HOH HOH . 
Q 7 HOH A 10 710 69 HOH HOH . 
Q 7 HOH A 11 711 33 HOH HOH . 
Q 7 HOH A 12 712 68 HOH HOH . 
Q 7 HOH A 13 713 73 HOH HOH . 
Q 7 HOH A 14 714 51 HOH HOH . 
Q 7 HOH A 15 715 32 HOH HOH . 
Q 7 HOH A 16 716 34 HOH HOH . 
Q 7 HOH A 17 717 44 HOH HOH . 
Q 7 HOH A 18 718 70 HOH HOH . 
Q 7 HOH A 19 719 54 HOH HOH . 
Q 7 HOH A 20 720 57 HOH HOH . 
Q 7 HOH A 21 721 42 HOH HOH . 
Q 7 HOH A 22 722 55 HOH HOH . 
Q 7 HOH A 23 723 58 HOH HOH . 
Q 7 HOH A 24 724 43 HOH HOH . 
R 7 HOH B 1 301 76 HOH HOH . 
R 7 HOH B 2 302 79 HOH HOH . 
R 7 HOH B 3 303 78 HOH HOH . 
R 7 HOH B 4 304 62 HOH HOH . 
R 7 HOH B 5 305 56 HOH HOH . 
R 7 HOH B 6 306 61 HOH HOH . 
R 7 HOH B 7 307 77 HOH HOH . 
S 7 HOH E 1 501 53 HOH HOH . 
S 7 HOH E 2 502 40 HOH HOH . 
S 7 HOH E 3 503 39 HOH HOH . 
S 7 HOH E 4 504 41 HOH HOH . 
S 7 HOH E 5 505 38 HOH HOH . 
S 7 HOH E 6 506 37 HOH HOH . 
S 7 HOH E 7 507 72 HOH HOH . 
S 7 HOH E 8 508 60 HOH HOH . 
T 7 HOH C 1 701 14 HOH HOH . 
T 7 HOH C 2 702 22 HOH HOH . 
T 7 HOH C 3 703 21 HOH HOH . 
T 7 HOH C 4 704 49 HOH HOH . 
T 7 HOH C 5 705 80 HOH HOH . 
T 7 HOH C 6 706 17 HOH HOH . 
T 7 HOH C 7 707 50 HOH HOH . 
T 7 HOH C 8 708 15 HOH HOH . 
T 7 HOH C 9 709 1 HOH HOH . 
T 7 HOH C 10 710 63 HOH HOH . 
T 7 HOH C 11 711 20 HOH HOH . 
T 7 HOH C 12 712 5 HOH HOH . 
T 7 HOH C 13 713 3 HOH HOH . 
T 7 HOH C 14 714 66 HOH HOH . 
T 7 HOH C 15 715 11 HOH HOH . 
T 7 HOH C 16 716 64 HOH HOH . 
T 7 HOH C 17 717 2 HOH HOH . 
T 7 HOH C 18 718 10 HOH HOH . 
T 7 HOH C 19 719 4 HOH HOH . 
T 7 HOH C 20 720 18 HOH HOH . 
T 7 HOH C 21 721 12 HOH HOH . 
T 7 HOH C 22 722 19 HOH HOH . 
T 7 HOH C 23 723 65 HOH HOH . 
T 7 HOH C 24 724 47 HOH HOH . 
T 7 HOH C 25 725 8 HOH HOH . 
T 7 HOH C 26 726 16 HOH HOH . 
T 7 HOH C 27 727 13 HOH HOH . 
T 7 HOH C 28 728 6 HOH HOH . 
T 7 HOH C 29 729 9 HOH HOH . 
U 7 HOH D 1 301 24 HOH HOH . 
U 7 HOH D 2 302 52 HOH HOH . 
U 7 HOH D 3 303 25 HOH HOH . 
U 7 HOH D 4 304 7 HOH HOH . 
U 7 HOH D 5 305 59 HOH HOH . 
U 7 HOH D 6 306 23 HOH HOH . 
V 7 HOH F 1 501 28 HOH HOH . 
V 7 HOH F 2 502 48 HOH HOH . 
V 7 HOH F 3 503 29 HOH HOH . 
V 7 HOH F 4 504 30 HOH HOH . 
V 7 HOH F 5 505 26 HOH HOH . 
V 7 HOH F 6 506 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . P 6 36.161 38.634 38.905 1 62.65 ? P AMP 403 F 1 
HETATM 2 O O1P AMP . . . P 6 36.859 38.22 37.616 1 77.23 ? O1P AMP 403 F 1 
HETATM 3 O O2P AMP . . . P 6 35.118 39.713 38.742 1 55.95 ? O2P AMP 403 F 1 
HETATM 4 O O3P AMP . . . P 6 35.809 37.472 39.817 1 64.2 ? O3P AMP 403 F 1 
HETATM 5 O O5' AMP . . . P 6 37.293 39.419 39.694 1 61.53 ? O5' AMP 403 F 1 
HETATM 6 C C5' AMP . . . P 6 38.384 38.732 40.297 1 69.71 ? C5' AMP 403 F 1 
HETATM 7 C C4' AMP . . . P 6 39.39 39.708 40.85 1 72.41 ? C4' AMP 403 F 1 
HETATM 8 O O4' AMP . . . P 6 39.774 40.631 39.793 1 83.86 ? O4' AMP 403 F 1 
HETATM 9 C C3' AMP . . . P 6 38.888 40.574 41.998 1 73.13 ? C3' AMP 403 F 1 
HETATM 10 O O3' AMP . . . P 6 39.987 40.91 42.842 1 76.01 ? O3' AMP 403 F 1 
HETATM 11 C C2' AMP . . . P 6 38.399 41.826 41.277 1 74.31 ? C2' AMP 403 F 1 
HETATM 12 O O2' AMP . . . P 6 38.331 42.988 42.076 1 75.14 ? O2' AMP 403 F 1 
HETATM 13 C C1' AMP . . . P 6 39.43 41.957 40.16 1 81.48 ? C1' AMP 403 F 1 
HETATM 14 N N9 AMP . . . P 6 38.907 42.635 38.971 1 75.72 ? N9 AMP 403 F 1 
HETATM 15 C C8 AMP . . . P 6 37.673 42.429 38.488 1 75.49 ? C8 AMP 403 F 1 
HETATM 16 N N7 AMP . . . P 6 37.443 43.184 37.39 1 67.69 ? N7 AMP 403 F 1 
HETATM 17 C C5 AMP . . . P 6 38.544 43.91 37.161 1 64.49 ? C5 AMP 403 F 1 
HETATM 18 C C6 AMP . . . P 6 38.955 44.913 36.148 1 75.84 ? C6 AMP 403 F 1 
HETATM 19 N N6 AMP . . . P 6 38.109 45.285 35.152 1 71.94 ? N6 AMP 403 F 1 
HETATM 20 N N1 AMP . . . P 6 40.201 45.432 36.252 1 75.84 ? N1 AMP 403 F 1 
HETATM 21 C C2 AMP . . . P 6 41.032 45.056 37.242 1 72.02 ? C2 AMP 403 F 1 
HETATM 22 N N3 AMP . . . P 6 40.724 44.151 38.187 1 69.9 ? N3 AMP 403 F 1 
HETATM 23 C C4 AMP . . . P 6 39.512 43.551 38.207 1 65.76 ? C4 AMP 403 F 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#