data_5ISO # _model_server_result.job_id jEoKCtKbTY0vMG6ioqpSWQ _model_server_result.datetime_utc '2024-10-19 03:48:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iso # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 5ISO # _exptl.entry_id 5ISO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.73 _cell.angle_gamma 90 _cell.entry_id 5ISO _cell.length_a 75.42 _cell.length_b 129.39 _cell.length_c 139.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ISO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,Q,R,S 1 1 D,E,F,L,M,N,O,P,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 123 B ARG 107 1_555 B N SEP 124 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C SEP 124 B SEP 108 1_555 B N HIS 125 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 E C ARG 123 D ARG 107 1_555 E N SEP 124 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 E C SEP 124 D SEP 108 1_555 E N HIS 125 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 400 n n O4 C21 STU sing 401 n n C25 C24 STU sing 402 n n C25 N3 STU sing 403 n n C25 H25 STU sing 404 n n C24 C23 STU sing 405 n n C24 H241 STU sing 406 n n C24 H242 STU sing 407 n n C23 C22 STU sing 408 n n C23 N4 STU sing 409 n n C23 H23 STU sing 410 n n C22 C21 STU sing 411 n n C22 O6 STU sing 412 n n C22 H22 STU sing 413 n n C21 C26 STU sing 414 n n C21 N2 STU sing 415 n n C26 H261 STU sing 416 n n C26 H262 STU sing 417 n n C26 H263 STU sing 418 n n N2 C18 STU sing 419 n y N2 C17 STU sing 420 n y C18 C19 STU doub 421 n y C18 C11 STU sing 422 n y C19 C6 STU sing 423 n y C19 N3 STU sing 424 n y C6 C7 STU doub 425 n y C6 C5 STU sing 426 n y C7 C10 STU sing 427 n y C7 C8 STU sing 428 n n C10 C11 STU doub 429 n y C10 C9 STU sing 430 n n C11 C12 STU sing 431 n y C12 C17 STU doub 432 n y C12 C13 STU sing 433 n y C17 C16 STU sing 434 n y C16 C15 STU doub 435 n y C16 H16 STU sing 436 n n C15 C14 STU sing 437 n y C15 H15 STU sing 438 n n C14 C13 STU doub 439 n y C14 H14 STU sing 440 n n C13 H13 STU sing 441 n n C9 N1 STU sing 442 n n C9 H91 STU sing 443 n n C9 H92 STU sing 444 n n N1 C8 STU sing 445 n n N1 HN1 STU sing 446 n n C8 O5 STU doub 447 n n C5 C20 STU doub 448 n y C5 C4 STU sing 449 n y C20 C1 STU sing 450 n y C20 N3 STU sing 451 n y C1 C2 STU doub 452 n y C1 H1 STU sing 453 n n C2 C3 STU sing 454 n y C2 H2 STU sing 455 n n C3 C4 STU doub 456 n y C3 H3 STU sing 457 n n C4 H4 STU sing 458 n n O6 C27 STU sing 459 n n C27 H271 STU sing 460 n n C27 H272 STU sing 461 n n C27 H273 STU sing 462 n n N4 C28 STU sing 463 n n N4 HN4 STU sing 464 n n C28 H281 STU sing 465 n n C28 H282 STU sing 466 n n C28 H283 STU sing 467 n n # _atom_sites.entry_id 5ISO _atom_sites.fract_transf_matrix[1][1] 0.013259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000632 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 STU A 1 601 1 STU STU . H 5 992 A 1 602 1 992 991 . I 6 AMP E 1 401 1 AMP AMP . J 6 AMP E 1 402 3 AMP AMP . K 6 AMP E 1 403 4 AMP AMP . L 4 STU C 1 601 1 STU STU . M 5 992 C 1 602 1 992 991 . N 6 AMP F 1 401 1 AMP AMP . O 6 AMP F 1 402 3 AMP AMP . P 6 AMP F 1 403 4 AMP AMP . Q 7 HOH A 1 701 46 HOH HOH . Q 7 HOH A 2 702 74 HOH HOH . Q 7 HOH A 3 703 75 HOH HOH . Q 7 HOH A 4 704 67 HOH HOH . Q 7 HOH A 5 705 71 HOH HOH . Q 7 HOH A 6 706 36 HOH HOH . Q 7 HOH A 7 707 45 HOH HOH . Q 7 HOH A 8 708 31 HOH HOH . Q 7 HOH A 9 709 35 HOH HOH . Q 7 HOH A 10 710 69 HOH HOH . Q 7 HOH A 11 711 33 HOH HOH . Q 7 HOH A 12 712 68 HOH HOH . Q 7 HOH A 13 713 73 HOH HOH . Q 7 HOH A 14 714 51 HOH HOH . Q 7 HOH A 15 715 32 HOH HOH . Q 7 HOH A 16 716 34 HOH HOH . Q 7 HOH A 17 717 44 HOH HOH . Q 7 HOH A 18 718 70 HOH HOH . Q 7 HOH A 19 719 54 HOH HOH . Q 7 HOH A 20 720 57 HOH HOH . Q 7 HOH A 21 721 42 HOH HOH . Q 7 HOH A 22 722 55 HOH HOH . Q 7 HOH A 23 723 58 HOH HOH . Q 7 HOH A 24 724 43 HOH HOH . R 7 HOH B 1 301 76 HOH HOH . R 7 HOH B 2 302 79 HOH HOH . R 7 HOH B 3 303 78 HOH HOH . R 7 HOH B 4 304 62 HOH HOH . R 7 HOH B 5 305 56 HOH HOH . R 7 HOH B 6 306 61 HOH HOH . R 7 HOH B 7 307 77 HOH HOH . S 7 HOH E 1 501 53 HOH HOH . S 7 HOH E 2 502 40 HOH HOH . S 7 HOH E 3 503 39 HOH HOH . S 7 HOH E 4 504 41 HOH HOH . S 7 HOH E 5 505 38 HOH HOH . S 7 HOH E 6 506 37 HOH HOH . S 7 HOH E 7 507 72 HOH HOH . S 7 HOH E 8 508 60 HOH HOH . T 7 HOH C 1 701 14 HOH HOH . T 7 HOH C 2 702 22 HOH HOH . T 7 HOH C 3 703 21 HOH HOH . T 7 HOH C 4 704 49 HOH HOH . T 7 HOH C 5 705 80 HOH HOH . T 7 HOH C 6 706 17 HOH HOH . T 7 HOH C 7 707 50 HOH HOH . T 7 HOH C 8 708 15 HOH HOH . T 7 HOH C 9 709 1 HOH HOH . T 7 HOH C 10 710 63 HOH HOH . T 7 HOH C 11 711 20 HOH HOH . T 7 HOH C 12 712 5 HOH HOH . T 7 HOH C 13 713 3 HOH HOH . T 7 HOH C 14 714 66 HOH HOH . T 7 HOH C 15 715 11 HOH HOH . T 7 HOH C 16 716 64 HOH HOH . T 7 HOH C 17 717 2 HOH HOH . T 7 HOH C 18 718 10 HOH HOH . T 7 HOH C 19 719 4 HOH HOH . T 7 HOH C 20 720 18 HOH HOH . T 7 HOH C 21 721 12 HOH HOH . T 7 HOH C 22 722 19 HOH HOH . T 7 HOH C 23 723 65 HOH HOH . T 7 HOH C 24 724 47 HOH HOH . T 7 HOH C 25 725 8 HOH HOH . T 7 HOH C 26 726 16 HOH HOH . T 7 HOH C 27 727 13 HOH HOH . T 7 HOH C 28 728 6 HOH HOH . T 7 HOH C 29 729 9 HOH HOH . U 7 HOH D 1 301 24 HOH HOH . U 7 HOH D 2 302 52 HOH HOH . U 7 HOH D 3 303 25 HOH HOH . U 7 HOH D 4 304 7 HOH HOH . U 7 HOH D 5 305 59 HOH HOH . U 7 HOH D 6 306 23 HOH HOH . V 7 HOH F 1 501 28 HOH HOH . V 7 HOH F 2 502 48 HOH HOH . V 7 HOH F 3 503 29 HOH HOH . V 7 HOH F 4 504 30 HOH HOH . V 7 HOH F 5 505 26 HOH HOH . V 7 HOH F 6 506 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . L 4 -18.214 2.223 58.861 1 59.79 ? O4 STU 601 C 1 HETATM 2 C C25 STU . . . L 4 -18.96 3.342 59.248 1 53.91 ? C25 STU 601 C 1 HETATM 3 C C24 STU . . . L 4 -19.469 4.209 58.101 1 49.11 ? C24 STU 601 C 1 HETATM 4 C C23 STU . . . L 4 -18.953 3.619 56.78 1 62.13 ? C23 STU 601 C 1 HETATM 5 C C22 STU . . . L 4 -17.429 3.47 56.902 1 50.87 ? C22 STU 601 C 1 HETATM 6 C C21 STU . . . L 4 -17.158 2.402 57.96 1 52.05 ? C21 STU 601 C 1 HETATM 7 C C26 STU . . . L 4 -17.163 1.069 57.198 1 43.36 ? C26 STU 601 C 1 HETATM 8 N N2 STU . . . L 4 -15.895 2.74 58.639 1 46.96 ? N2 STU 601 C 1 HETATM 9 C C18 STU . . . L 4 -15.87 3.529 59.781 1 59.6 ? C18 STU 601 C 1 HETATM 10 C C19 STU . . . L 4 -16.921 4.095 60.516 1 55.39 ? C19 STU 601 C 1 HETATM 11 C C6 STU . . . L 4 -16.648 4.845 61.661 1 51.02 ? C6 STU 601 C 1 HETATM 12 C C7 STU . . . L 4 -15.307 5.032 62.074 1 51.57 ? C7 STU 601 C 1 HETATM 13 C C10 STU . . . L 4 -14.271 4.475 61.334 1 49.16 ? C10 STU 601 C 1 HETATM 14 C C11 STU . . . L 4 -14.545 3.734 60.199 1 59.06 ? C11 STU 601 C 1 HETATM 15 C C12 STU . . . L 4 -13.711 3.03 59.247 1 50.3 ? C12 STU 601 C 1 HETATM 16 C C17 STU . . . L 4 -14.581 2.441 58.294 1 57.25 ? C17 STU 601 C 1 HETATM 17 C C16 STU . . . L 4 -14.025 1.701 57.239 1 51.84 ? C16 STU 601 C 1 HETATM 18 C C15 STU . . . L 4 -12.635 1.582 57.182 1 51.83 ? C15 STU 601 C 1 HETATM 19 C C14 STU . . . L 4 -11.797 2.16 58.124 1 44.37 ? C14 STU 601 C 1 HETATM 20 C C13 STU . . . L 4 -12.322 2.897 59.182 1 42.62 ? C13 STU 601 C 1 HETATM 21 C C9 STU . . . L 4 -12.985 4.858 62.016 1 45.14 ? C9 STU 601 C 1 HETATM 22 N N1 STU . . . L 4 -13.38 5.672 63.172 1 52.03 ? N1 STU 601 C 1 HETATM 23 C C8 STU . . . L 4 -14.726 5.766 63.207 1 62.02 ? C8 STU 601 C 1 HETATM 24 O O5 STU . . . L 4 -15.377 6.376 64.046 1 63.19 ? O5 STU 601 C 1 HETATM 25 C C5 STU . . . L 4 -17.94 5.282 62.173 1 47 ? C5 STU 601 C 1 HETATM 26 C C20 STU . . . L 4 -18.928 4.759 61.303 1 58.48 ? C20 STU 601 C 1 HETATM 27 C C1 STU . . . L 4 -20.296 4.984 61.523 1 50.77 ? C1 STU 601 C 1 HETATM 28 C C2 STU . . . L 4 -20.627 5.755 62.618 1 46.97 ? C2 STU 601 C 1 HETATM 29 C C3 STU . . . L 4 -19.665 6.267 63.479 1 41.97 ? C3 STU 601 C 1 HETATM 30 C C4 STU . . . L 4 -18.308 6.051 63.282 1 51.59 ? C4 STU 601 C 1 HETATM 31 N N3 STU . . . L 4 -18.257 4.057 60.309 1 57.33 ? N3 STU 601 C 1 HETATM 32 O O6 STU . . . L 4 -16.914 4.718 57.392 1 50.15 ? O6 STU 601 C 1 HETATM 33 C C27 STU . . . L 4 -15.963 5.21 56.453 1 61.27 ? C27 STU 601 C 1 HETATM 34 N N4 STU . . . L 4 -19.302 4.521 55.676 1 65.7 ? N4 STU 601 C 1 HETATM 35 C C28 STU . . . L 4 -18.999 3.796 54.438 1 65.59 ? C28 STU 601 C 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #