data_5ISO
#
_model_server_result.job_id            CWoXz_dI8QkGbu886_d0Zw 
_model_server_result.datetime_utc      '2024-10-19 03:37:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iso 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":602}' 
#
_entry.id    5ISO 
#
_exptl.entry_id    5ISO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              431.871 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '5-[[6-chloranyl-5-(1-methylindol-5-yl)-1H-benzimidazol-2-yl]oxy]-2-methyl-benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.73 
_cell.angle_gamma         90 
_cell.entry_id            5ISO 
_cell.length_a            75.42 
_cell.length_b            129.39 
_cell.length_c            139.28 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ISO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 software_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,Q,R,S 1 1 
D,E,F,L,M,N,O,P,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ARG 123 B ARG 107 1_555 B N SEP 124 B SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C SEP 124 B SEP 108 1_555 B N HIS 125 B HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 E C ARG 123 D ARG 107 1_555 E N SEP 124 D SEP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 E C SEP 124 D SEP 108 1_555 E N HIS 125 D HIS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C24 H18 Cl N3 O3' 
_chem_comp.formula_weight    431.871 
_chem_comp.id                992 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '5-[[6-chloranyl-5-(1-methylindol-5-yl)-1H-benzimidazol-2-yl]oxy]-2-methyl-benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C21 992 sing 1 n y 
C6 C5 992 doub 2 n y 
C6 C8 992 sing 3 n y 
C21 C2 992 doub 4 n y 
C5 N7 992 sing 5 n y 
C5 C4 992 sing 6 n y 
N7 C1 992 sing 7 n n 
N7 C9 992 sing 8 n y 
C4 C3 992 doub 9 n y 
C3 C2 992 sing 10 n y 
C2 C7 992 sing 11 n n 
C7 C10 992 sing 12 n y 
C7 C14 992 doub 13 n y 
C10 C11 992 doub 14 n y 
C10 CL1 992 sing 15 n n 
C11 C12 992 sing 16 n y 
C12 C13 992 doub 17 n y 
C12 N21 992 sing 18 n y 
C13 C14 992 sing 19 n y 
C13 N22 992 sing 20 n y 
N21 C23 992 sing 21 n y 
N22 C23 992 doub 22 n y 
C23 O25 992 sing 23 n n 
O25 C26 992 sing 24 n n 
C26 C27 992 sing 25 n y 
C26 C31 992 doub 26 n y 
C27 C28 992 doub 27 n y 
C28 C29 992 sing 28 n y 
C29 C30 992 doub 29 n y 
C29 C32 992 sing 30 n n 
C30 C31 992 sing 31 n y 
C30 C18 992 sing 32 n n 
C8 C9 992 doub 33 n y 
C18 O19 992 sing 34 n n 
C18 O20 992 doub 35 n n 
C21 H21 992 sing 36 n n 
C8 H8 992 sing 37 n n 
C4 H4 992 sing 38 n n 
C1 H11C 992 sing 39 n n 
C1 H12C 992 sing 40 n n 
C1 H13C 992 sing 41 n n 
C9 H9 992 sing 42 n n 
C3 H3 992 sing 43 n n 
C14 H14 992 sing 44 n n 
C11 H11 992 sing 45 n n 
N21 HA 992 sing 46 n n 
C27 H27 992 sing 47 n n 
C31 H31 992 sing 48 n n 
C28 H28 992 sing 49 n n 
C32 H321 992 sing 50 n n 
C32 H322 992 sing 51 n n 
C32 H323 992 sing 52 n n 
O19 H19 992 sing 53 n n 
#
_atom_sites.entry_id                     5ISO 
_atom_sites.fract_transf_matrix[1][1]    0.013259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000632 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007188 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 STU A 1 601 1 STU STU . 
H 5 992 A 1 602 1 992 991 . 
I 6 AMP E 1 401 1 AMP AMP . 
J 6 AMP E 1 402 3 AMP AMP . 
K 6 AMP E 1 403 4 AMP AMP . 
L 4 STU C 1 601 1 STU STU . 
M 5 992 C 1 602 1 992 991 . 
N 6 AMP F 1 401 1 AMP AMP . 
O 6 AMP F 1 402 3 AMP AMP . 
P 6 AMP F 1 403 4 AMP AMP . 
Q 7 HOH A 1 701 46 HOH HOH . 
Q 7 HOH A 2 702 74 HOH HOH . 
Q 7 HOH A 3 703 75 HOH HOH . 
Q 7 HOH A 4 704 67 HOH HOH . 
Q 7 HOH A 5 705 71 HOH HOH . 
Q 7 HOH A 6 706 36 HOH HOH . 
Q 7 HOH A 7 707 45 HOH HOH . 
Q 7 HOH A 8 708 31 HOH HOH . 
Q 7 HOH A 9 709 35 HOH HOH . 
Q 7 HOH A 10 710 69 HOH HOH . 
Q 7 HOH A 11 711 33 HOH HOH . 
Q 7 HOH A 12 712 68 HOH HOH . 
Q 7 HOH A 13 713 73 HOH HOH . 
Q 7 HOH A 14 714 51 HOH HOH . 
Q 7 HOH A 15 715 32 HOH HOH . 
Q 7 HOH A 16 716 34 HOH HOH . 
Q 7 HOH A 17 717 44 HOH HOH . 
Q 7 HOH A 18 718 70 HOH HOH . 
Q 7 HOH A 19 719 54 HOH HOH . 
Q 7 HOH A 20 720 57 HOH HOH . 
Q 7 HOH A 21 721 42 HOH HOH . 
Q 7 HOH A 22 722 55 HOH HOH . 
Q 7 HOH A 23 723 58 HOH HOH . 
Q 7 HOH A 24 724 43 HOH HOH . 
R 7 HOH B 1 301 76 HOH HOH . 
R 7 HOH B 2 302 79 HOH HOH . 
R 7 HOH B 3 303 78 HOH HOH . 
R 7 HOH B 4 304 62 HOH HOH . 
R 7 HOH B 5 305 56 HOH HOH . 
R 7 HOH B 6 306 61 HOH HOH . 
R 7 HOH B 7 307 77 HOH HOH . 
S 7 HOH E 1 501 53 HOH HOH . 
S 7 HOH E 2 502 40 HOH HOH . 
S 7 HOH E 3 503 39 HOH HOH . 
S 7 HOH E 4 504 41 HOH HOH . 
S 7 HOH E 5 505 38 HOH HOH . 
S 7 HOH E 6 506 37 HOH HOH . 
S 7 HOH E 7 507 72 HOH HOH . 
S 7 HOH E 8 508 60 HOH HOH . 
T 7 HOH C 1 701 14 HOH HOH . 
T 7 HOH C 2 702 22 HOH HOH . 
T 7 HOH C 3 703 21 HOH HOH . 
T 7 HOH C 4 704 49 HOH HOH . 
T 7 HOH C 5 705 80 HOH HOH . 
T 7 HOH C 6 706 17 HOH HOH . 
T 7 HOH C 7 707 50 HOH HOH . 
T 7 HOH C 8 708 15 HOH HOH . 
T 7 HOH C 9 709 1 HOH HOH . 
T 7 HOH C 10 710 63 HOH HOH . 
T 7 HOH C 11 711 20 HOH HOH . 
T 7 HOH C 12 712 5 HOH HOH . 
T 7 HOH C 13 713 3 HOH HOH . 
T 7 HOH C 14 714 66 HOH HOH . 
T 7 HOH C 15 715 11 HOH HOH . 
T 7 HOH C 16 716 64 HOH HOH . 
T 7 HOH C 17 717 2 HOH HOH . 
T 7 HOH C 18 718 10 HOH HOH . 
T 7 HOH C 19 719 4 HOH HOH . 
T 7 HOH C 20 720 18 HOH HOH . 
T 7 HOH C 21 721 12 HOH HOH . 
T 7 HOH C 22 722 19 HOH HOH . 
T 7 HOH C 23 723 65 HOH HOH . 
T 7 HOH C 24 724 47 HOH HOH . 
T 7 HOH C 25 725 8 HOH HOH . 
T 7 HOH C 26 726 16 HOH HOH . 
T 7 HOH C 27 727 13 HOH HOH . 
T 7 HOH C 28 728 6 HOH HOH . 
T 7 HOH C 29 729 9 HOH HOH . 
U 7 HOH D 1 301 24 HOH HOH . 
U 7 HOH D 2 302 52 HOH HOH . 
U 7 HOH D 3 303 25 HOH HOH . 
U 7 HOH D 4 304 7 HOH HOH . 
U 7 HOH D 5 305 59 HOH HOH . 
U 7 HOH D 6 306 23 HOH HOH . 
V 7 HOH F 1 501 28 HOH HOH . 
V 7 HOH F 2 502 48 HOH HOH . 
V 7 HOH F 3 503 29 HOH HOH . 
V 7 HOH F 4 504 30 HOH HOH . 
V 7 HOH F 5 505 26 HOH HOH . 
V 7 HOH F 6 506 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6 992 . . . M 5 -17.504 -9.372 68.249 1 81.13 ? C6 992 602 C 1 
HETATM 2 C C21 992 . . . M 5 -16.42 -9.467 67.321 1 67.45 ? C21 992 602 C 1 
HETATM 3 C C5 992 . . . M 5 -18.614 -10.268 68.202 1 83.53 ? C5 992 602 C 1 
HETATM 4 N N7 992 . . . M 5 -19.451 -9.909 69.221 1 89.68 ? N7 992 602 C 1 
HETATM 5 C C4 992 . . . M 5 -18.65 -11.255 67.225 1 82.99 ? C4 992 602 C 1 
HETATM 6 C C3 992 . . . M 5 -17.581 -11.326 66.329 1 82.55 ? C3 992 602 C 1 
HETATM 7 C C2 992 . . . M 5 -16.491 -10.478 66.338 1 83.52 ? C2 992 602 C 1 
HETATM 8 C C1 992 . . . M 5 -20.7 -10.595 69.483 1 102.09 ? C1 992 602 C 1 
HETATM 9 C C7 992 . . . M 5 -15.458 -10.766 65.255 1 86.18 ? C7 992 602 C 1 
HETATM 10 C C10 992 . . . M 5 -14.113 -11.093 65.548 1 81.93 ? C10 992 602 C 1 
HETATM 11 C C11 992 . . . M 5 -13.203 -11.381 64.518 1 83.75 ? C11 992 602 C 1 
HETATM 12 C C12 992 . . . M 5 -13.604 -11.38 63.189 1 82.8 ? C12 992 602 C 1 
HETATM 13 C C13 992 . . . M 5 -14.959 -11.07 62.879 1 85.49 ? C13 992 602 C 1 
HETATM 14 C C14 992 . . . M 5 -15.86 -10.78 63.908 1 87.31 ? C14 992 602 C 1 
HETATM 15 N N21 992 . . . M 5 -12.949 -11.623 62.014 1 85.58 ? N21 992 602 C 1 
HETATM 16 N N22 992 . . . M 5 -15.073 -11.145 61.495 1 89.2 ? N22 992 602 C 1 
HETATM 17 C C23 992 . . . M 5 -13.866 -11.464 61.077 1 89.4 ? C23 992 602 C 1 
HETATM 18 O O25 992 . . . M 5 -13.529 -11.649 59.726 1 94.56 ? O25 992 602 C 1 
HETATM 19 C C26 992 . . . M 5 -14.311 -10.877 58.851 1 83.57 ? C26 992 602 C 1 
HETATM 20 C C27 992 . . . M 5 -13.979 -9.58 58.585 1 71.43 ? C27 992 602 C 1 
HETATM 21 C C28 992 . . . M 5 -14.729 -8.813 57.718 1 67.82 ? C28 992 602 C 1 
HETATM 22 C C29 992 . . . M 5 -15.861 -9.35 57.082 1 74.73 ? C29 992 602 C 1 
HETATM 23 C C30 992 . . . M 5 -16.21 -10.709 57.36 1 89.28 ? C30 992 602 C 1 
HETATM 24 C C31 992 . . . M 5 -15.417 -11.451 58.242 1 89.99 ? C31 992 602 C 1 
HETATM 25 C C32 992 . . . M 5 -16.695 -8.517 56.132 1 78.6 ? C32 992 602 C 1 
HETATM 26 CL CL1 992 . . . M 5 -13.507 -11.127 67.166 1 77.56 ? CL1 992 602 C 1 
HETATM 27 C C8 992 . . . M 5 -17.766 -8.502 69.338 1 96.77 ? C8 992 602 C 1 
HETATM 28 C C9 992 . . . M 5 -18.98 -8.884 69.903 1 72.57 ? C9 992 602 C 1 
HETATM 29 C C18 992 . . . M 5 -17.381 -11.333 56.732 1 106.75 ? C18 992 602 C 1 
HETATM 30 O O19 992 . . . M 5 -18.402 -11.588 57.437 1 110.29 ? O19 992 602 C 1 
HETATM 31 O O20 992 . . . M 5 -17.343 -11.612 55.518 1 120.76 ? O20 992 602 C 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#