data_5ISP # _model_server_result.job_id '_DduAxxuWC8kNRTxAULymw' _model_server_result.datetime_utc '2024-11-28 06:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5isp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ISP # _exptl.entry_id 5ISP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ISP _cell.length_a 79.129 _cell.length_b 79.129 _cell.length_c 107.405 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ISP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 5ISP _atom_sites.fract_transf_matrix[1][1] 0.012638 _atom_sites.fract_transf_matrix[1][2] 0.007296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 201 207 NAP NAP . C 3 U06 X 1 202 1 U06 DRG . D 4 GOL X 1 203 221 GOL GOL . E 5 HOH X 1 301 68 HOH HOH . E 5 HOH X 2 302 89 HOH HOH . E 5 HOH X 3 303 105 HOH HOH . E 5 HOH X 4 304 76 HOH HOH . E 5 HOH X 5 305 45 HOH HOH . E 5 HOH X 6 306 64 HOH HOH . E 5 HOH X 7 307 62 HOH HOH . E 5 HOH X 8 308 88 HOH HOH . E 5 HOH X 9 309 73 HOH HOH . E 5 HOH X 10 310 1 HOH HOH . E 5 HOH X 11 311 77 HOH HOH . E 5 HOH X 12 312 79 HOH HOH . E 5 HOH X 13 313 41 HOH HOH . E 5 HOH X 14 314 86 HOH HOH . E 5 HOH X 15 315 26 HOH HOH . E 5 HOH X 16 316 16 HOH HOH . E 5 HOH X 17 317 92 HOH HOH . E 5 HOH X 18 318 55 HOH HOH . E 5 HOH X 19 319 35 HOH HOH . E 5 HOH X 20 320 54 HOH HOH . E 5 HOH X 21 321 22 HOH HOH . E 5 HOH X 22 322 3 HOH HOH . E 5 HOH X 23 323 72 HOH HOH . E 5 HOH X 24 324 78 HOH HOH . E 5 HOH X 25 325 9 HOH HOH . E 5 HOH X 26 326 56 HOH HOH . E 5 HOH X 27 327 7 HOH HOH . E 5 HOH X 28 328 42 HOH HOH . E 5 HOH X 29 329 48 HOH HOH . E 5 HOH X 30 330 32 HOH HOH . E 5 HOH X 31 331 17 HOH HOH . E 5 HOH X 32 332 60 HOH HOH . E 5 HOH X 33 333 69 HOH HOH . E 5 HOH X 34 334 46 HOH HOH . E 5 HOH X 35 335 82 HOH HOH . E 5 HOH X 36 336 18 HOH HOH . E 5 HOH X 37 337 50 HOH HOH . E 5 HOH X 38 338 4 HOH HOH . E 5 HOH X 39 339 65 HOH HOH . E 5 HOH X 40 340 25 HOH HOH . E 5 HOH X 41 341 34 HOH HOH . E 5 HOH X 42 342 36 HOH HOH . E 5 HOH X 43 343 31 HOH HOH . E 5 HOH X 44 344 90 HOH HOH . E 5 HOH X 45 345 12 HOH HOH . E 5 HOH X 46 346 57 HOH HOH . E 5 HOH X 47 347 97 HOH HOH . E 5 HOH X 48 348 47 HOH HOH . E 5 HOH X 49 349 91 HOH HOH . E 5 HOH X 50 350 33 HOH HOH . E 5 HOH X 51 351 8 HOH HOH . E 5 HOH X 52 352 104 HOH HOH . E 5 HOH X 53 353 5 HOH HOH . E 5 HOH X 54 354 49 HOH HOH . E 5 HOH X 55 355 74 HOH HOH . E 5 HOH X 56 356 84 HOH HOH . E 5 HOH X 57 357 37 HOH HOH . E 5 HOH X 58 358 39 HOH HOH . E 5 HOH X 59 359 6 HOH HOH . E 5 HOH X 60 360 96 HOH HOH . E 5 HOH X 61 361 98 HOH HOH . E 5 HOH X 62 362 28 HOH HOH . E 5 HOH X 63 363 94 HOH HOH . E 5 HOH X 64 364 15 HOH HOH . E 5 HOH X 65 365 20 HOH HOH . E 5 HOH X 66 366 67 HOH HOH . E 5 HOH X 67 367 51 HOH HOH . E 5 HOH X 68 368 23 HOH HOH . E 5 HOH X 69 369 11 HOH HOH . E 5 HOH X 70 370 2 HOH HOH . E 5 HOH X 71 371 58 HOH HOH . E 5 HOH X 72 372 70 HOH HOH . E 5 HOH X 73 373 85 HOH HOH . E 5 HOH X 74 374 21 HOH HOH . E 5 HOH X 75 375 93 HOH HOH . E 5 HOH X 76 376 95 HOH HOH . E 5 HOH X 77 377 71 HOH HOH . E 5 HOH X 78 378 99 HOH HOH . E 5 HOH X 79 379 10 HOH HOH . E 5 HOH X 80 380 30 HOH HOH . E 5 HOH X 81 381 103 HOH HOH . E 5 HOH X 82 382 44 HOH HOH . E 5 HOH X 83 383 38 HOH HOH . E 5 HOH X 84 384 83 HOH HOH . E 5 HOH X 85 385 14 HOH HOH . E 5 HOH X 86 386 101 HOH HOH . E 5 HOH X 87 387 81 HOH HOH . E 5 HOH X 88 388 66 HOH HOH . E 5 HOH X 89 389 13 HOH HOH . E 5 HOH X 90 390 87 HOH HOH . E 5 HOH X 91 391 80 HOH HOH . E 5 HOH X 92 392 100 HOH HOH . E 5 HOH X 93 393 43 HOH HOH . E 5 HOH X 94 394 19 HOH HOH . E 5 HOH X 95 395 29 HOH HOH . E 5 HOH X 96 396 106 HOH HOH . E 5 HOH X 97 397 40 HOH HOH . E 5 HOH X 98 398 102 HOH HOH . E 5 HOH X 99 399 75 HOH HOH . E 5 HOH X 100 400 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 6.605 -31.549 6.508 1 21.02 ? PA NAP 201 X 1 HETATM 2 O O1A NAP . . . B 2 6.868 -30.279 5.796 1 19.18 ? O1A NAP 201 X 1 HETATM 3 O O2A NAP . . . B 2 5.281 -32.164 6.365 1 21.92 ? O2A NAP 201 X 1 HETATM 4 O O5B NAP . . . B 2 7.753 -32.65 6.188 1 18.93 ? O5B NAP 201 X 1 HETATM 5 C C5B NAP . . . B 2 9.109 -32.291 6.342 1 19.02 ? C5B NAP 201 X 1 HETATM 6 C C4B NAP . . . B 2 9.9 -33.325 5.567 1 18.02 ? C4B NAP 201 X 1 HETATM 7 O O4B NAP . . . B 2 9.653 -33.112 4.195 1 22.7 ? O4B NAP 201 X 1 HETATM 8 C C3B NAP . . . B 2 11.407 -33.177 5.704 1 23.76 ? C3B NAP 201 X 1 HETATM 9 O O3B NAP . . . B 2 11.892 -33.753 6.903 1 19.04 ? O3B NAP 201 X 1 HETATM 10 C C2B NAP . . . B 2 11.843 -33.907 4.453 1 22.67 ? C2B NAP 201 X 1 HETATM 11 O O2B NAP . . . B 2 11.628 -35.296 4.599 1 25.21 ? O2B NAP 201 X 1 HETATM 12 C C1B NAP . . . B 2 10.8 -33.455 3.442 1 18.99 ? C1B NAP 201 X 1 HETATM 13 N N9A NAP . . . B 2 11.331 -32.309 2.682 1 23.01 ? N9A NAP 201 X 1 HETATM 14 C C8A NAP . . . B 2 10.963 -30.986 2.801 1 24.22 ? C8A NAP 201 X 1 HETATM 15 N N7A NAP . . . B 2 11.68 -30.259 1.909 1 27.68 ? N7A NAP 201 X 1 HETATM 16 C C5A NAP . . . B 2 12.498 -31.104 1.23 1 25.75 ? C5A NAP 201 X 1 HETATM 17 C C6A NAP . . . B 2 13.423 -30.903 0.218 1 31.81 ? C6A NAP 201 X 1 HETATM 18 N N6A NAP . . . B 2 13.654 -29.683 -0.257 1 33.14 ? N6A NAP 201 X 1 HETATM 19 N N1A NAP . . . B 2 14.116 -31.985 -0.285 1 29.28 ? N1A NAP 201 X 1 HETATM 20 C C2A NAP . . . B 2 13.872 -33.253 0.199 1 27.45 ? C2A NAP 201 X 1 HETATM 21 N N3A NAP . . . B 2 12.954 -33.455 1.202 1 24.43 ? N3A NAP 201 X 1 HETATM 22 C C4A NAP . . . B 2 12.274 -32.395 1.704 1 27.69 ? C4A NAP 201 X 1 HETATM 23 O O3 NAP . . . B 2 6.935 -31.287 8.066 1 22.39 ? O3 NAP 201 X 1 HETATM 24 P PN NAP . . . B 2 6.682 -30.058 9.088 1 19.63 ? PN NAP 201 X 1 HETATM 25 O O1N NAP . . . B 2 7.068 -30.564 10.42 1 18.57 ? O1N NAP 201 X 1 HETATM 26 O O2N NAP . . . B 2 7.342 -28.868 8.572 1 19.65 ? O2N NAP 201 X 1 HETATM 27 O O5D NAP . . . B 2 5.082 -29.887 9.066 1 18.53 ? O5D NAP 201 X 1 HETATM 28 C C5D NAP . . . B 2 4.242 -30.881 9.612 1 19.89 ? C5D NAP 201 X 1 HETATM 29 C C4D NAP . . . B 2 3.079 -30.21 10.322 1 20.49 ? C4D NAP 201 X 1 HETATM 30 O O4D NAP . . . B 2 2.26 -29.563 9.345 1 18.14 ? O4D NAP 201 X 1 HETATM 31 C C3D NAP . . . B 2 2.202 -31.233 11.026 1 20.22 ? C3D NAP 201 X 1 HETATM 32 O O3D NAP . . . B 2 1.832 -30.77 12.314 1 18.76 ? O3D NAP 201 X 1 HETATM 33 C C2D NAP . . . B 2 0.962 -31.307 10.161 1 19.71 ? C2D NAP 201 X 1 HETATM 34 O O2D NAP . . . B 2 -0.188 -31.569 10.917 1 18.13 ? O2D NAP 201 X 1 HETATM 35 C C1D NAP . . . B 2 0.922 -29.884 9.644 1 16.04 ? C1D NAP 201 X 1 HETATM 36 N N1N NAP . . . B 2 0.106 -29.664 8.437 1 19.57 ? N1N NAP 201 X 1 HETATM 37 C C2N NAP . . . B 2 -0.938 -28.797 8.542 1 17.82 ? C2N NAP 201 X 1 HETATM 38 C C3N NAP . . . B 2 -1.713 -28.529 7.432 1 16.2 ? C3N NAP 201 X 1 HETATM 39 C C7N NAP . . . B 2 -2.788 -27.495 7.547 1 17.9 ? C7N NAP 201 X 1 HETATM 40 O O7N NAP . . . B 2 -3.386 -27.071 6.369 1 20.41 ? O7N NAP 201 X 1 HETATM 41 N N7N NAP . . . B 2 -3.143 -27.032 8.74 1 18.56 ? N7N NAP 201 X 1 HETATM 42 C C4N NAP . . . B 2 -1.422 -29.127 6.206 1 19.7 ? C4N NAP 201 X 1 HETATM 43 C C5N NAP . . . B 2 -0.341 -30.001 6.104 1 19.77 ? C5N NAP 201 X 1 HETATM 44 C C6N NAP . . . B 2 0.425 -30.256 7.245 1 19.52 ? C6N NAP 201 X 1 HETATM 45 P P2B NAP . . . B 2 12.826 -36.318 5.038 1 24 ? P2B NAP 201 X 1 HETATM 46 O O1X NAP . . . B 2 13.233 -35.944 6.446 1 26.12 ? O1X NAP 201 X 1 HETATM 47 O O2X NAP . . . B 2 12.161 -37.667 5.014 1 20.89 ? O2X NAP 201 X 1 HETATM 48 O O3X NAP . . . B 2 13.953 -36.132 4.054 1 23.2 ? O3X NAP 201 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #