data_5ISP # _model_server_result.job_id I26vWEuhy8TcqEAKBQlvdA _model_server_result.datetime_utc '2024-11-06 22:42:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5isp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5ISP # _exptl.entry_id 5ISP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ISP _cell.length_a 79.129 _cell.length_b 79.129 _cell.length_c 107.405 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ISP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5ISP _atom_sites.fract_transf_matrix[1][1] 0.012638 _atom_sites.fract_transf_matrix[1][2] 0.007296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 201 207 NAP NAP . C 3 U06 X 1 202 1 U06 DRG . D 4 GOL X 1 203 221 GOL GOL . E 5 HOH X 1 301 68 HOH HOH . E 5 HOH X 2 302 89 HOH HOH . E 5 HOH X 3 303 105 HOH HOH . E 5 HOH X 4 304 76 HOH HOH . E 5 HOH X 5 305 45 HOH HOH . E 5 HOH X 6 306 64 HOH HOH . E 5 HOH X 7 307 62 HOH HOH . E 5 HOH X 8 308 88 HOH HOH . E 5 HOH X 9 309 73 HOH HOH . E 5 HOH X 10 310 1 HOH HOH . E 5 HOH X 11 311 77 HOH HOH . E 5 HOH X 12 312 79 HOH HOH . E 5 HOH X 13 313 41 HOH HOH . E 5 HOH X 14 314 86 HOH HOH . E 5 HOH X 15 315 26 HOH HOH . E 5 HOH X 16 316 16 HOH HOH . E 5 HOH X 17 317 92 HOH HOH . E 5 HOH X 18 318 55 HOH HOH . E 5 HOH X 19 319 35 HOH HOH . E 5 HOH X 20 320 54 HOH HOH . E 5 HOH X 21 321 22 HOH HOH . E 5 HOH X 22 322 3 HOH HOH . E 5 HOH X 23 323 72 HOH HOH . E 5 HOH X 24 324 78 HOH HOH . E 5 HOH X 25 325 9 HOH HOH . E 5 HOH X 26 326 56 HOH HOH . E 5 HOH X 27 327 7 HOH HOH . E 5 HOH X 28 328 42 HOH HOH . E 5 HOH X 29 329 48 HOH HOH . E 5 HOH X 30 330 32 HOH HOH . E 5 HOH X 31 331 17 HOH HOH . E 5 HOH X 32 332 60 HOH HOH . E 5 HOH X 33 333 69 HOH HOH . E 5 HOH X 34 334 46 HOH HOH . E 5 HOH X 35 335 82 HOH HOH . E 5 HOH X 36 336 18 HOH HOH . E 5 HOH X 37 337 50 HOH HOH . E 5 HOH X 38 338 4 HOH HOH . E 5 HOH X 39 339 65 HOH HOH . E 5 HOH X 40 340 25 HOH HOH . E 5 HOH X 41 341 34 HOH HOH . E 5 HOH X 42 342 36 HOH HOH . E 5 HOH X 43 343 31 HOH HOH . E 5 HOH X 44 344 90 HOH HOH . E 5 HOH X 45 345 12 HOH HOH . E 5 HOH X 46 346 57 HOH HOH . E 5 HOH X 47 347 97 HOH HOH . E 5 HOH X 48 348 47 HOH HOH . E 5 HOH X 49 349 91 HOH HOH . E 5 HOH X 50 350 33 HOH HOH . E 5 HOH X 51 351 8 HOH HOH . E 5 HOH X 52 352 104 HOH HOH . E 5 HOH X 53 353 5 HOH HOH . E 5 HOH X 54 354 49 HOH HOH . E 5 HOH X 55 355 74 HOH HOH . E 5 HOH X 56 356 84 HOH HOH . E 5 HOH X 57 357 37 HOH HOH . E 5 HOH X 58 358 39 HOH HOH . E 5 HOH X 59 359 6 HOH HOH . E 5 HOH X 60 360 96 HOH HOH . E 5 HOH X 61 361 98 HOH HOH . E 5 HOH X 62 362 28 HOH HOH . E 5 HOH X 63 363 94 HOH HOH . E 5 HOH X 64 364 15 HOH HOH . E 5 HOH X 65 365 20 HOH HOH . E 5 HOH X 66 366 67 HOH HOH . E 5 HOH X 67 367 51 HOH HOH . E 5 HOH X 68 368 23 HOH HOH . E 5 HOH X 69 369 11 HOH HOH . E 5 HOH X 70 370 2 HOH HOH . E 5 HOH X 71 371 58 HOH HOH . E 5 HOH X 72 372 70 HOH HOH . E 5 HOH X 73 373 85 HOH HOH . E 5 HOH X 74 374 21 HOH HOH . E 5 HOH X 75 375 93 HOH HOH . E 5 HOH X 76 376 95 HOH HOH . E 5 HOH X 77 377 71 HOH HOH . E 5 HOH X 78 378 99 HOH HOH . E 5 HOH X 79 379 10 HOH HOH . E 5 HOH X 80 380 30 HOH HOH . E 5 HOH X 81 381 103 HOH HOH . E 5 HOH X 82 382 44 HOH HOH . E 5 HOH X 83 383 38 HOH HOH . E 5 HOH X 84 384 83 HOH HOH . E 5 HOH X 85 385 14 HOH HOH . E 5 HOH X 86 386 101 HOH HOH . E 5 HOH X 87 387 81 HOH HOH . E 5 HOH X 88 388 66 HOH HOH . E 5 HOH X 89 389 13 HOH HOH . E 5 HOH X 90 390 87 HOH HOH . E 5 HOH X 91 391 80 HOH HOH . E 5 HOH X 92 392 100 HOH HOH . E 5 HOH X 93 393 43 HOH HOH . E 5 HOH X 94 394 19 HOH HOH . E 5 HOH X 95 395 29 HOH HOH . E 5 HOH X 96 396 106 HOH HOH . E 5 HOH X 97 397 40 HOH HOH . E 5 HOH X 98 398 102 HOH HOH . E 5 HOH X 99 399 75 HOH HOH . E 5 HOH X 100 400 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -2.201 -13.472 8.381 1 45.61 ? C1 GOL 203 X 1 HETATM 2 O O1 GOL . . . D 4 -2.508 -12.628 7.29 1 53.41 ? O1 GOL 203 X 1 HETATM 3 C C2 GOL . . . D 4 -0.908 -12.954 8.987 1 48.62 ? C2 GOL 203 X 1 HETATM 4 O O2 GOL . . . D 4 -0.645 -13.549 10.247 1 45.27 ? O2 GOL 203 X 1 HETATM 5 C C3 GOL . . . D 4 0.213 -13.219 7.992 1 29.37 ? C3 GOL 203 X 1 HETATM 6 O O3 GOL . . . D 4 1.359 -12.512 8.407 1 36.74 ? O3 GOL 203 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #