data_5ISQ # _model_server_result.job_id e6mzGcPl873wCJEZc2XDIg _model_server_result.datetime_utc '2024-11-24 13:48:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5isq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ISQ # _exptl.entry_id 5ISQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ISQ _cell.length_a 78.985 _cell.length_b 78.985 _cell.length_c 108.686 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ISQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 5ISQ _atom_sites.fract_transf_matrix[1][1] 0.012661 _atom_sites.fract_transf_matrix[1][2] 0.00731 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 201 207 NAP NAP . C 3 U06 X 1 202 1 U06 DRG . D 4 GOL X 1 203 221 GOL GOL . E 5 HOH X 1 301 50 HOH HOH . E 5 HOH X 2 302 71 HOH HOH . E 5 HOH X 3 303 79 HOH HOH . E 5 HOH X 4 304 89 HOH HOH . E 5 HOH X 5 305 110 HOH HOH . E 5 HOH X 6 306 80 HOH HOH . E 5 HOH X 7 307 112 HOH HOH . E 5 HOH X 8 308 114 HOH HOH . E 5 HOH X 9 309 34 HOH HOH . E 5 HOH X 10 310 61 HOH HOH . E 5 HOH X 11 311 35 HOH HOH . E 5 HOH X 12 312 105 HOH HOH . E 5 HOH X 13 313 92 HOH HOH . E 5 HOH X 14 314 56 HOH HOH . E 5 HOH X 15 315 108 HOH HOH . E 5 HOH X 16 316 45 HOH HOH . E 5 HOH X 17 317 72 HOH HOH . E 5 HOH X 18 318 41 HOH HOH . E 5 HOH X 19 319 57 HOH HOH . E 5 HOH X 20 320 95 HOH HOH . E 5 HOH X 21 321 94 HOH HOH . E 5 HOH X 22 322 81 HOH HOH . E 5 HOH X 23 323 60 HOH HOH . E 5 HOH X 24 324 84 HOH HOH . E 5 HOH X 25 325 29 HOH HOH . E 5 HOH X 26 326 97 HOH HOH . E 5 HOH X 27 327 22 HOH HOH . E 5 HOH X 28 328 33 HOH HOH . E 5 HOH X 29 329 3 HOH HOH . E 5 HOH X 30 330 47 HOH HOH . E 5 HOH X 31 331 69 HOH HOH . E 5 HOH X 32 332 75 HOH HOH . E 5 HOH X 33 333 16 HOH HOH . E 5 HOH X 34 334 6 HOH HOH . E 5 HOH X 35 335 14 HOH HOH . E 5 HOH X 36 336 30 HOH HOH . E 5 HOH X 37 337 23 HOH HOH . E 5 HOH X 38 338 106 HOH HOH . E 5 HOH X 39 339 58 HOH HOH . E 5 HOH X 40 340 46 HOH HOH . E 5 HOH X 41 341 40 HOH HOH . E 5 HOH X 42 342 88 HOH HOH . E 5 HOH X 43 343 21 HOH HOH . E 5 HOH X 44 344 36 HOH HOH . E 5 HOH X 45 345 38 HOH HOH . E 5 HOH X 46 346 52 HOH HOH . E 5 HOH X 47 347 85 HOH HOH . E 5 HOH X 48 348 44 HOH HOH . E 5 HOH X 49 349 70 HOH HOH . E 5 HOH X 50 350 51 HOH HOH . E 5 HOH X 51 351 15 HOH HOH . E 5 HOH X 52 352 59 HOH HOH . E 5 HOH X 53 353 68 HOH HOH . E 5 HOH X 54 354 4 HOH HOH . E 5 HOH X 55 355 63 HOH HOH . E 5 HOH X 56 356 9 HOH HOH . E 5 HOH X 57 357 7 HOH HOH . E 5 HOH X 58 358 24 HOH HOH . E 5 HOH X 59 359 8 HOH HOH . E 5 HOH X 60 360 5 HOH HOH . E 5 HOH X 61 361 67 HOH HOH . E 5 HOH X 62 362 20 HOH HOH . E 5 HOH X 63 363 27 HOH HOH . E 5 HOH X 64 364 25 HOH HOH . E 5 HOH X 65 365 37 HOH HOH . E 5 HOH X 66 366 73 HOH HOH . E 5 HOH X 67 367 109 HOH HOH . E 5 HOH X 68 368 2 HOH HOH . E 5 HOH X 69 369 43 HOH HOH . E 5 HOH X 70 370 12 HOH HOH . E 5 HOH X 71 371 107 HOH HOH . E 5 HOH X 72 372 18 HOH HOH . E 5 HOH X 73 373 42 HOH HOH . E 5 HOH X 74 374 39 HOH HOH . E 5 HOH X 75 375 102 HOH HOH . E 5 HOH X 76 376 17 HOH HOH . E 5 HOH X 77 377 87 HOH HOH . E 5 HOH X 78 378 13 HOH HOH . E 5 HOH X 79 379 31 HOH HOH . E 5 HOH X 80 380 66 HOH HOH . E 5 HOH X 81 381 10 HOH HOH . E 5 HOH X 82 382 86 HOH HOH . E 5 HOH X 83 383 91 HOH HOH . E 5 HOH X 84 384 26 HOH HOH . E 5 HOH X 85 385 55 HOH HOH . E 5 HOH X 86 386 93 HOH HOH . E 5 HOH X 87 387 62 HOH HOH . E 5 HOH X 88 388 76 HOH HOH . E 5 HOH X 89 389 32 HOH HOH . E 5 HOH X 90 390 111 HOH HOH . E 5 HOH X 91 391 78 HOH HOH . E 5 HOH X 92 392 65 HOH HOH . E 5 HOH X 93 393 113 HOH HOH . E 5 HOH X 94 394 77 HOH HOH . E 5 HOH X 95 395 48 HOH HOH . E 5 HOH X 96 396 49 HOH HOH . E 5 HOH X 97 397 53 HOH HOH . E 5 HOH X 98 398 100 HOH HOH . E 5 HOH X 99 399 90 HOH HOH . E 5 HOH X 100 400 28 HOH HOH . E 5 HOH X 101 401 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 32.892 99.86 115.32 1 17.39 ? PA NAP 201 X 1 HETATM 2 O O1A NAP . . . B 2 32.68 98.592 114.593 1 15.99 ? O1A NAP 201 X 1 HETATM 3 O O2A NAP . . . B 2 34.221 100.494 115.176 1 18.33 ? O2A NAP 201 X 1 HETATM 4 O O5B NAP . . . B 2 31.755 100.945 114.95 1 18.06 ? O5B NAP 201 X 1 HETATM 5 C C5B NAP . . . B 2 30.391 100.628 115.14 1 18.12 ? C5B NAP 201 X 1 HETATM 6 C C4B NAP . . . B 2 29.568 101.618 114.338 1 17.27 ? C4B NAP 201 X 1 HETATM 7 O O4B NAP . . . B 2 29.792 101.404 112.953 1 19.43 ? O4B NAP 201 X 1 HETATM 8 C C3B NAP . . . B 2 28.06 101.474 114.506 1 20.97 ? C3B NAP 201 X 1 HETATM 9 O O3B NAP . . . B 2 27.592 102.073 115.697 1 17.26 ? O3B NAP 201 X 1 HETATM 10 C C2B NAP . . . B 2 27.598 102.192 113.253 1 18.04 ? C2B NAP 201 X 1 HETATM 11 O O2B NAP . . . B 2 27.813 103.572 113.419 1 19.41 ? O2B NAP 201 X 1 HETATM 12 C C1B NAP . . . B 2 28.627 101.741 112.225 1 18.11 ? C1B NAP 201 X 1 HETATM 13 N N9A NAP . . . B 2 28.106 100.591 111.464 1 19.98 ? N9A NAP 201 X 1 HETATM 14 C C8A NAP . . . B 2 28.484 99.273 111.576 1 23.51 ? C8A NAP 201 X 1 HETATM 15 N N7A NAP . . . B 2 27.762 98.542 110.692 1 25.93 ? N7A NAP 201 X 1 HETATM 16 C C5A NAP . . . B 2 26.924 99.386 110.025 1 24.28 ? C5A NAP 201 X 1 HETATM 17 C C6A NAP . . . B 2 25.988 99.2 109.015 1 27.28 ? C6A NAP 201 X 1 HETATM 18 N N6A NAP . . . B 2 25.743 97.994 108.516 1 25.54 ? N6A NAP 201 X 1 HETATM 19 N N1A NAP . . . B 2 25.285 100.285 108.522 1 23.79 ? N1A NAP 201 X 1 HETATM 20 C C2A NAP . . . B 2 25.525 101.543 109.023 1 26.34 ? C2A NAP 201 X 1 HETATM 21 N N3A NAP . . . B 2 26.454 101.733 110.014 1 18.97 ? N3A NAP 201 X 1 HETATM 22 C C4A NAP . . . B 2 27.149 100.673 110.5 1 23.7 ? C4A NAP 201 X 1 HETATM 23 O O3 NAP . . . B 2 32.562 99.603 116.876 1 17.31 ? O3 NAP 201 X 1 HETATM 24 P PN NAP . . . B 2 32.823 98.365 117.885 1 18.65 ? PN NAP 201 X 1 HETATM 25 O O1N NAP . . . B 2 32.456 98.894 119.214 1 17.1 ? O1N NAP 201 X 1 HETATM 26 O O2N NAP . . . B 2 32.13 97.203 117.314 1 17.07 ? O2N NAP 201 X 1 HETATM 27 O O5D NAP . . . B 2 34.425 98.207 117.835 1 17.28 ? O5D NAP 201 X 1 HETATM 28 C C5D NAP . . . B 2 35.245 99.189 118.443 1 18.07 ? C5D NAP 201 X 1 HETATM 29 C C4D NAP . . . B 2 36.426 98.537 119.155 1 18.92 ? C4D NAP 201 X 1 HETATM 30 O O4D NAP . . . B 2 37.252 97.89 118.189 1 16.16 ? O4D NAP 201 X 1 HETATM 31 C C3D NAP . . . B 2 37.314 99.574 119.838 1 15.3 ? C3D NAP 201 X 1 HETATM 32 O O3D NAP . . . B 2 37.717 99.12 121.119 1 17.2 ? O3D NAP 201 X 1 HETATM 33 C C2D NAP . . . B 2 38.545 99.667 118.972 1 17.13 ? C2D NAP 201 X 1 HETATM 34 O O2D NAP . . . B 2 39.695 99.919 119.732 1 15.51 ? O2D NAP 201 X 1 HETATM 35 C C1D NAP . . . B 2 38.587 98.246 118.45 1 14.24 ? C1D NAP 201 X 1 HETATM 36 N N1N NAP . . . B 2 39.384 98.028 117.233 1 17.42 ? N1N NAP 201 X 1 HETATM 37 C C2N NAP . . . B 2 40.426 97.152 117.321 1 15.84 ? C2N NAP 201 X 1 HETATM 38 C C3N NAP . . . B 2 41.195 96.872 116.205 1 16.43 ? C3N NAP 201 X 1 HETATM 39 C C7N NAP . . . B 2 42.282 95.853 116.317 1 14.5 ? C7N NAP 201 X 1 HETATM 40 O O7N NAP . . . B 2 42.881 95.416 115.143 1 16.56 ? O7N NAP 201 X 1 HETATM 41 N N7N NAP . . . B 2 42.645 95.385 117.515 1 17.04 ? N7N NAP 201 X 1 HETATM 42 C C4N NAP . . . B 2 40.887 97.469 114.985 1 15.44 ? C4N NAP 201 X 1 HETATM 43 C C5N NAP . . . B 2 39.806 98.346 114.907 1 19.9 ? C5N NAP 201 X 1 HETATM 44 C C6N NAP . . . B 2 39.049 98.614 116.045 1 18.4 ? C6N NAP 201 X 1 HETATM 45 P P2B NAP . . . B 2 26.603 104.583 113.84 1 20.62 ? P2B NAP 201 X 1 HETATM 46 O O1X NAP . . . B 2 26.201 104.203 115.248 1 19.97 ? O1X NAP 201 X 1 HETATM 47 O O2X NAP . . . B 2 27.209 105.962 113.78 1 21.07 ? O2X NAP 201 X 1 HETATM 48 O O3X NAP . . . B 2 25.475 104.367 112.883 1 19.9 ? O3X NAP 201 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #