data_5IST # _model_server_result.job_id patsUlAz6Qg2jQheDQXSJw _model_server_result.datetime_utc '2024-11-04 20:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ist # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5IST # _exptl.entry_id 5IST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Tricyclic NADPH' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IST _cell.length_a 79.067 _cell.length_b 79.067 _cell.length_c 108.419 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IST _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id XNP _chem_comp.mon_nstd_flag . _chem_comp.name 'Tricyclic NADPH' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3' C3' XNP sing 497 n n C3' C2' XNP sing 498 n n C3' C4' XNP sing 499 n n C2' O2' XNP sing 500 n n C2' C1' XNP sing 501 n n O2' CAA XNP sing 502 n n CAA CAB XNP sing 503 n n CAA NAF XNP sing 504 n n CAB CAC XNP sing 505 n n CAC CAD XNP sing 506 n n CAD CBT XNP sing 507 n n CAD CAE XNP doub 508 n n CBT OBV XNP doub 509 n n CBT NBU XNP sing 510 n n CAE NAF XNP sing 511 n n NAF C1' XNP sing 512 n n C1' O4' XNP sing 513 n n O4' C4' XNP sing 514 n n C4' C5' XNP sing 515 n n C5' O5' XNP sing 516 n n O5' PAN XNP sing 517 n n PAN OBP XNP doub 518 n n PAN OBO XNP sing 519 n n PAN OAO XNP sing 520 n n OAO PAP XNP sing 521 n n PAP OBQ XNP doub 522 n n PAP OBR XNP sing 523 n n PAP OAQ XNP sing 524 n n OAQ CAR XNP sing 525 n n CAR CAS XNP sing 526 n n CAS OAW XNP sing 527 n n CAS CAT XNP sing 528 n n OAW CAV XNP sing 529 n n CAT OAZ XNP sing 530 n n CAT CAU XNP sing 531 n n CAU OAY XNP sing 532 n n CAU CAV XNP sing 533 n n OAY PBA XNP sing 534 n n PBA OBB XNP doub 535 n n PBA OBC XNP sing 536 n n PBA OBD XNP sing 537 n n CAV NAX XNP sing 538 n n NAX CBE XNP sing 539 n y NAX CBH XNP sing 540 n y CBE NBF XNP doub 541 n y NBF CBG XNP sing 542 n y CBG CBH XNP doub 543 n y CBG CBI XNP sing 544 n y CBH NBL XNP sing 545 n y NBL CBK XNP doub 546 n y CBK NBJ XNP sing 547 n y NBJ CBI XNP doub 548 n y CBI NBM XNP sing 549 n n O3' H1 XNP sing 550 n n C3' H2 XNP sing 551 n n C2' H3 XNP sing 552 n n CAA H4 XNP sing 553 n n CAB H5 XNP sing 554 n n CAB H6 XNP sing 555 n n CAC H7 XNP sing 556 n n CAC H8 XNP sing 557 n n NBU H9 XNP sing 558 n n NBU H10 XNP sing 559 n n CAE H11 XNP sing 560 n n C1' H12 XNP sing 561 n n C4' H13 XNP sing 562 n n C5' H14 XNP sing 563 n n C5' H15 XNP sing 564 n n OBO H16 XNP sing 565 n n OBR H17 XNP sing 566 n n CAR H18 XNP sing 567 n n CAR H19 XNP sing 568 n n CAS H20 XNP sing 569 n n CAT H21 XNP sing 570 n n OAZ H22 XNP sing 571 n n CAU H23 XNP sing 572 n n OBC H24 XNP sing 573 n n OBD H25 XNP sing 574 n n CAV H26 XNP sing 575 n n CBE H27 XNP sing 576 n n CBK H30 XNP sing 577 n n NBM H31 XNP sing 578 n n NBM H32 XNP sing 579 n n # _atom_sites.entry_id 5IST _atom_sites.fract_transf_matrix[1][1] 0.012648 _atom_sites.fract_transf_matrix[1][2] 0.007302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U06 X 1 201 1 U06 DRG . C 3 XNP X 1 202 1 XNP ANH . D 4 NAP X 1 203 207 NAP NAP . E 5 HOH X 1 301 16 HOH HOH . E 5 HOH X 2 302 52 HOH HOH . E 5 HOH X 3 303 24 HOH HOH . E 5 HOH X 4 304 113 HOH HOH . E 5 HOH X 5 305 62 HOH HOH . E 5 HOH X 6 306 68 HOH HOH . E 5 HOH X 7 307 75 HOH HOH . E 5 HOH X 8 308 106 HOH HOH . E 5 HOH X 9 309 69 HOH HOH . E 5 HOH X 10 310 29 HOH HOH . E 5 HOH X 11 311 95 HOH HOH . E 5 HOH X 12 312 94 HOH HOH . E 5 HOH X 13 313 60 HOH HOH . E 5 HOH X 14 314 14 HOH HOH . E 5 HOH X 15 315 63 HOH HOH . E 5 HOH X 16 316 36 HOH HOH . E 5 HOH X 17 317 115 HOH HOH . E 5 HOH X 18 318 57 HOH HOH . E 5 HOH X 19 319 8 HOH HOH . E 5 HOH X 20 320 41 HOH HOH . E 5 HOH X 21 321 20 HOH HOH . E 5 HOH X 22 322 53 HOH HOH . E 5 HOH X 23 323 37 HOH HOH . E 5 HOH X 24 324 104 HOH HOH . E 5 HOH X 25 325 59 HOH HOH . E 5 HOH X 26 326 61 HOH HOH . E 5 HOH X 27 327 68 HOH HOH . E 5 HOH X 28 328 3 HOH HOH . E 5 HOH X 29 329 33 HOH HOH . E 5 HOH X 30 330 110 HOH HOH . E 5 HOH X 31 331 77 HOH HOH . E 5 HOH X 32 332 11 HOH HOH . E 5 HOH X 33 333 31 HOH HOH . E 5 HOH X 34 334 15 HOH HOH . E 5 HOH X 35 335 116 HOH HOH . E 5 HOH X 36 336 56 HOH HOH . E 5 HOH X 37 337 78 HOH HOH . E 5 HOH X 38 338 65 HOH HOH . E 5 HOH X 39 339 23 HOH HOH . E 5 HOH X 40 340 46 HOH HOH . E 5 HOH X 41 341 90 HOH HOH . E 5 HOH X 42 342 117 HOH HOH . E 5 HOH X 43 343 5 HOH HOH . E 5 HOH X 44 344 76 HOH HOH . E 5 HOH X 45 345 12 HOH HOH . E 5 HOH X 46 346 48 HOH HOH . E 5 HOH X 47 347 40 HOH HOH . E 5 HOH X 48 348 80 HOH HOH . E 5 HOH X 49 349 70 HOH HOH . E 5 HOH X 50 350 28 HOH HOH . E 5 HOH X 51 351 93 HOH HOH . E 5 HOH X 52 352 7 HOH HOH . E 5 HOH X 53 353 45 HOH HOH . E 5 HOH X 54 354 44 HOH HOH . E 5 HOH X 55 355 25 HOH HOH . E 5 HOH X 56 356 72 HOH HOH . E 5 HOH X 57 357 9 HOH HOH . E 5 HOH X 58 358 100 HOH HOH . E 5 HOH X 59 359 101 HOH HOH . E 5 HOH X 60 360 32 HOH HOH . E 5 HOH X 61 361 1 HOH HOH . E 5 HOH X 62 362 19 HOH HOH . E 5 HOH X 63 363 26 HOH HOH . E 5 HOH X 64 364 87 HOH HOH . E 5 HOH X 65 365 2 HOH HOH . E 5 HOH X 66 366 74 HOH HOH . E 5 HOH X 67 367 4 HOH HOH . E 5 HOH X 68 368 83 HOH HOH . E 5 HOH X 69 369 54 HOH HOH . E 5 HOH X 70 370 6 HOH HOH . E 5 HOH X 71 371 13 HOH HOH . E 5 HOH X 72 372 71 HOH HOH . E 5 HOH X 73 373 35 HOH HOH . E 5 HOH X 74 374 81 HOH HOH . E 5 HOH X 75 375 118 HOH HOH . E 5 HOH X 76 376 27 HOH HOH . E 5 HOH X 77 377 89 HOH HOH . E 5 HOH X 78 378 86 HOH HOH . E 5 HOH X 79 379 42 HOH HOH . E 5 HOH X 80 380 66 HOH HOH . E 5 HOH X 81 381 55 HOH HOH . E 5 HOH X 82 382 49 HOH HOH . E 5 HOH X 83 383 84 HOH HOH . E 5 HOH X 84 384 108 HOH HOH . E 5 HOH X 85 385 103 HOH HOH . E 5 HOH X 86 386 98 HOH HOH . E 5 HOH X 87 387 70 HOH HOH . E 5 HOH X 88 388 17 HOH HOH . E 5 HOH X 89 389 38 HOH HOH . E 5 HOH X 90 390 99 HOH HOH . E 5 HOH X 91 391 39 HOH HOH . E 5 HOH X 92 392 64 HOH HOH . E 5 HOH X 93 393 109 HOH HOH . E 5 HOH X 94 394 122 HOH HOH . E 5 HOH X 95 395 105 HOH HOH . E 5 HOH X 96 396 79 HOH HOH . E 5 HOH X 97 397 10 HOH HOH . E 5 HOH X 98 398 50 HOH HOH . E 5 HOH X 99 399 21 HOH HOH . E 5 HOH X 100 400 75 HOH HOH . E 5 HOH X 101 401 123 HOH HOH . E 5 HOH X 102 402 30 HOH HOH . E 5 HOH X 103 403 51 HOH HOH . E 5 HOH X 104 404 43 HOH HOH . E 5 HOH X 105 405 82 HOH HOH . E 5 HOH X 106 406 69 HOH HOH . E 5 HOH X 107 407 18 HOH HOH . E 5 HOH X 108 408 112 HOH HOH . E 5 HOH X 109 409 107 HOH HOH . E 5 HOH X 110 410 111 HOH HOH . E 5 HOH X 111 411 125 HOH HOH . E 5 HOH X 112 412 58 HOH HOH . E 5 HOH X 113 413 91 HOH HOH . E 5 HOH X 114 414 73 HOH HOH . E 5 HOH X 115 415 85 HOH HOH . E 5 HOH X 116 416 88 HOH HOH . E 5 HOH X 117 417 22 HOH HOH . E 5 HOH X 118 418 102 HOH HOH . E 5 HOH X 119 419 124 HOH HOH . E 5 HOH X 120 420 47 HOH HOH . E 5 HOH X 121 421 114 HOH HOH . E 5 HOH X 122 422 34 HOH HOH . E 5 HOH X 123 423 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3' XNP . B . C 3 5.474 -32.097 12.952 0.4 16.3 ? O3' XNP 202 X 1 HETATM 2 C C3' XNP . B . C 3 5.391 -31.937 11.523 0.4 13.21 ? C3' XNP 202 X 1 HETATM 3 C C2' XNP . B . C 3 4.066 -32.41 10.967 0.4 15.64 ? C2' XNP 202 X 1 HETATM 4 O O2' XNP . B . C 3 2.932 -32.482 11.865 0.4 12.18 ? O2' XNP 202 X 1 HETATM 5 C CAA XNP . B . C 3 1.957 -31.625 11.151 0.4 14.24 ? CAA XNP 202 X 1 HETATM 6 C CAB XNP . B . C 3 0.505 -31.984 11.262 0.4 16.26 ? CAB XNP 202 X 1 HETATM 7 C CAC XNP . B . C 3 -0.212 -30.832 10.562 0.4 15.02 ? CAC XNP 202 X 1 HETATM 8 C CAD XNP . B . C 3 0.375 -30.53 9.32 0.4 14.06 ? CAD XNP 202 X 1 HETATM 9 C CBT XNP . B . C 3 -0.316 -29.774 8.379 0.4 11.47 ? CBT XNP 202 X 1 HETATM 10 O OBV XNP . B . C 3 0.197 -29.503 7.291 0.4 18.03 ? OBV XNP 202 X 1 HETATM 11 N NBU XNP . B . C 3 -1.52 -29.36 8.755 0.4 12.7 ? NBU XNP 202 X 1 HETATM 12 C CAE XNP . B . C 3 1.667 -30.923 8.98 0.4 12.63 ? CAE XNP 202 X 1 HETATM 13 N NAF XNP . B . C 3 2.407 -31.698 9.761 0.4 13.92 ? NAF XNP 202 X 1 HETATM 14 C C1' XNP . B . C 3 3.636 -31.126 10.281 0.4 16.87 ? C1' XNP 202 X 1 HETATM 15 O O4' XNP . B . C 3 4.835 -30.668 9.699 0.4 11.29 ? O4' XNP 202 X 1 HETATM 16 C C4' XNP . B . C 3 5.373 -30.474 11.039 0.4 13.11 ? C4' XNP 202 X 1 HETATM 17 C C5' XNP . B . C 3 6.745 -29.817 11.146 0.4 11.72 ? C5' XNP 202 X 1 HETATM 18 O O5' XNP . B . C 3 7.646 -30.457 10.247 0.4 13.04 ? O5' XNP 202 X 1 HETATM 19 P PAN XNP . B . C 3 7.805 -29.982 8.705 0.4 9.59 ? PAN XNP 202 X 1 HETATM 20 O OBP XNP . B . C 3 9.406 -29.954 8.52 0.4 9.22 ? OBP XNP 202 X 1 HETATM 21 O OBO XNP . B . C 3 7.151 -28.681 8.411 0.4 13.07 ? OBO XNP 202 X 1 HETATM 22 O OAO XNP . B . C 3 7.289 -31.209 7.817 0.4 13.66 ? OAO XNP 202 X 1 HETATM 23 P PAP XNP . B . C 3 6.785 -31.053 6.271 0.4 15.05 ? PAP XNP 202 X 1 HETATM 24 O OBQ XNP . B . C 3 5.792 -32.268 5.813 0.4 15.56 ? OBQ XNP 202 X 1 HETATM 25 O OBR XNP . B . C 3 7.615 -30.326 5.263 0.4 14.07 ? OBR XNP 202 X 1 HETATM 26 O OAQ XNP . B . C 3 7.862 -32.294 6.046 0.4 13.84 ? OAQ XNP 202 X 1 HETATM 27 C CAR XNP . B . C 3 9.272 -32.163 6.323 0.4 14.77 ? CAR XNP 202 X 1 HETATM 28 C CAS XNP . B . C 3 10.101 -33.191 5.526 0.4 16.71 ? CAS XNP 202 X 1 HETATM 29 O OAW XNP . B . C 3 9.945 -33.011 4.091 0.4 14.05 ? OAW XNP 202 X 1 HETATM 30 C CAT XNP . B . C 3 11.599 -32.973 5.696 0.4 16.22 ? CAT XNP 202 X 1 HETATM 31 O OAZ XNP . B . C 3 12.057 -33.401 6.987 0.4 13.91 ? OAZ XNP 202 X 1 HETATM 32 C CAU XNP . B . C 3 12.056 -33.907 4.614 0.4 13.89 ? CAU XNP 202 X 1 HETATM 33 O OAY XNP . B . C 3 11.637 -35.243 4.894 0.4 12.47 ? OAY XNP 202 X 1 HETATM 34 P PBA XNP . B . C 3 12.838 -36.328 5.219 0.4 11.58 ? PBA XNP 202 X 1 HETATM 35 O OBB XNP . B . C 3 12.136 -37.772 5.244 0.4 13.64 ? OBB XNP 202 X 1 HETATM 36 O OBC XNP . B . C 3 13.28 -35.988 6.735 0.4 15.63 ? OBC XNP 202 X 1 HETATM 37 O OBD XNP . B . C 3 13.93 -36.221 4.223 0.4 13.81 ? OBD XNP 202 X 1 HETATM 38 C CAV XNP . B . C 3 11.239 -33.309 3.491 0.4 16.15 ? CAV XNP 202 X 1 HETATM 39 N NAX XNP . B . C 3 11.905 -32.08 3.051 0.4 16.72 ? NAX XNP 202 X 1 HETATM 40 C CBE XNP . B . C 3 10.965 -31.002 2.715 0.4 16.67 ? CBE XNP 202 X 1 HETATM 41 N NBF XNP . B . C 3 11.833 -30.175 1.814 0.4 17.76 ? NBF XNP 202 X 1 HETATM 42 C CBG XNP . B . C 3 12.715 -31.009 1.252 0.4 19.51 ? CBG XNP 202 X 1 HETATM 43 C CBH XNP . B . C 3 12.327 -32.281 1.674 0.4 17.67 ? CBH XNP 202 X 1 HETATM 44 N NBL XNP . B . C 3 13.249 -33.394 1.33 0.4 15.57 ? NBL XNP 202 X 1 HETATM 45 C CBK XNP . B . C 3 14.239 -33.156 0.379 0.4 17.95 ? CBK XNP 202 X 1 HETATM 46 N NBJ XNP . B . C 3 14.456 -31.851 -0.077 0.4 19.79 ? NBJ XNP 202 X 1 HETATM 47 C CBI XNP . B . C 3 13.696 -30.836 0.368 0.4 21.06 ? CBI XNP 202 X 1 HETATM 48 N NBM XNP . B . C 3 13.893 -29.589 -0.049 0.4 23.26 ? NBM XNP 202 X 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #