data_5IST # _model_server_result.job_id Q_pSzuqJRMymcMxCPBkifA _model_server_result.datetime_utc '2024-11-28 04:12:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ist # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5IST # _exptl.entry_id 5IST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5IST _cell.length_a 79.067 _cell.length_b 79.067 _cell.length_c 108.419 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IST _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 5IST _atom_sites.fract_transf_matrix[1][1] 0.012648 _atom_sites.fract_transf_matrix[1][2] 0.007302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U06 X 1 201 1 U06 DRG . C 3 XNP X 1 202 1 XNP ANH . D 4 NAP X 1 203 207 NAP NAP . E 5 HOH X 1 301 16 HOH HOH . E 5 HOH X 2 302 52 HOH HOH . E 5 HOH X 3 303 24 HOH HOH . E 5 HOH X 4 304 113 HOH HOH . E 5 HOH X 5 305 62 HOH HOH . E 5 HOH X 6 306 68 HOH HOH . E 5 HOH X 7 307 75 HOH HOH . E 5 HOH X 8 308 106 HOH HOH . E 5 HOH X 9 309 69 HOH HOH . E 5 HOH X 10 310 29 HOH HOH . E 5 HOH X 11 311 95 HOH HOH . E 5 HOH X 12 312 94 HOH HOH . E 5 HOH X 13 313 60 HOH HOH . E 5 HOH X 14 314 14 HOH HOH . E 5 HOH X 15 315 63 HOH HOH . E 5 HOH X 16 316 36 HOH HOH . E 5 HOH X 17 317 115 HOH HOH . E 5 HOH X 18 318 57 HOH HOH . E 5 HOH X 19 319 8 HOH HOH . E 5 HOH X 20 320 41 HOH HOH . E 5 HOH X 21 321 20 HOH HOH . E 5 HOH X 22 322 53 HOH HOH . E 5 HOH X 23 323 37 HOH HOH . E 5 HOH X 24 324 104 HOH HOH . E 5 HOH X 25 325 59 HOH HOH . E 5 HOH X 26 326 61 HOH HOH . E 5 HOH X 27 327 68 HOH HOH . E 5 HOH X 28 328 3 HOH HOH . E 5 HOH X 29 329 33 HOH HOH . E 5 HOH X 30 330 110 HOH HOH . E 5 HOH X 31 331 77 HOH HOH . E 5 HOH X 32 332 11 HOH HOH . E 5 HOH X 33 333 31 HOH HOH . E 5 HOH X 34 334 15 HOH HOH . E 5 HOH X 35 335 116 HOH HOH . E 5 HOH X 36 336 56 HOH HOH . E 5 HOH X 37 337 78 HOH HOH . E 5 HOH X 38 338 65 HOH HOH . E 5 HOH X 39 339 23 HOH HOH . E 5 HOH X 40 340 46 HOH HOH . E 5 HOH X 41 341 90 HOH HOH . E 5 HOH X 42 342 117 HOH HOH . E 5 HOH X 43 343 5 HOH HOH . E 5 HOH X 44 344 76 HOH HOH . E 5 HOH X 45 345 12 HOH HOH . E 5 HOH X 46 346 48 HOH HOH . E 5 HOH X 47 347 40 HOH HOH . E 5 HOH X 48 348 80 HOH HOH . E 5 HOH X 49 349 70 HOH HOH . E 5 HOH X 50 350 28 HOH HOH . E 5 HOH X 51 351 93 HOH HOH . E 5 HOH X 52 352 7 HOH HOH . E 5 HOH X 53 353 45 HOH HOH . E 5 HOH X 54 354 44 HOH HOH . E 5 HOH X 55 355 25 HOH HOH . E 5 HOH X 56 356 72 HOH HOH . E 5 HOH X 57 357 9 HOH HOH . E 5 HOH X 58 358 100 HOH HOH . E 5 HOH X 59 359 101 HOH HOH . E 5 HOH X 60 360 32 HOH HOH . E 5 HOH X 61 361 1 HOH HOH . E 5 HOH X 62 362 19 HOH HOH . E 5 HOH X 63 363 26 HOH HOH . E 5 HOH X 64 364 87 HOH HOH . E 5 HOH X 65 365 2 HOH HOH . E 5 HOH X 66 366 74 HOH HOH . E 5 HOH X 67 367 4 HOH HOH . E 5 HOH X 68 368 83 HOH HOH . E 5 HOH X 69 369 54 HOH HOH . E 5 HOH X 70 370 6 HOH HOH . E 5 HOH X 71 371 13 HOH HOH . E 5 HOH X 72 372 71 HOH HOH . E 5 HOH X 73 373 35 HOH HOH . E 5 HOH X 74 374 81 HOH HOH . E 5 HOH X 75 375 118 HOH HOH . E 5 HOH X 76 376 27 HOH HOH . E 5 HOH X 77 377 89 HOH HOH . E 5 HOH X 78 378 86 HOH HOH . E 5 HOH X 79 379 42 HOH HOH . E 5 HOH X 80 380 66 HOH HOH . E 5 HOH X 81 381 55 HOH HOH . E 5 HOH X 82 382 49 HOH HOH . E 5 HOH X 83 383 84 HOH HOH . E 5 HOH X 84 384 108 HOH HOH . E 5 HOH X 85 385 103 HOH HOH . E 5 HOH X 86 386 98 HOH HOH . E 5 HOH X 87 387 70 HOH HOH . E 5 HOH X 88 388 17 HOH HOH . E 5 HOH X 89 389 38 HOH HOH . E 5 HOH X 90 390 99 HOH HOH . E 5 HOH X 91 391 39 HOH HOH . E 5 HOH X 92 392 64 HOH HOH . E 5 HOH X 93 393 109 HOH HOH . E 5 HOH X 94 394 122 HOH HOH . E 5 HOH X 95 395 105 HOH HOH . E 5 HOH X 96 396 79 HOH HOH . E 5 HOH X 97 397 10 HOH HOH . E 5 HOH X 98 398 50 HOH HOH . E 5 HOH X 99 399 21 HOH HOH . E 5 HOH X 100 400 75 HOH HOH . E 5 HOH X 101 401 123 HOH HOH . E 5 HOH X 102 402 30 HOH HOH . E 5 HOH X 103 403 51 HOH HOH . E 5 HOH X 104 404 43 HOH HOH . E 5 HOH X 105 405 82 HOH HOH . E 5 HOH X 106 406 69 HOH HOH . E 5 HOH X 107 407 18 HOH HOH . E 5 HOH X 108 408 112 HOH HOH . E 5 HOH X 109 409 107 HOH HOH . E 5 HOH X 110 410 111 HOH HOH . E 5 HOH X 111 411 125 HOH HOH . E 5 HOH X 112 412 58 HOH HOH . E 5 HOH X 113 413 91 HOH HOH . E 5 HOH X 114 414 73 HOH HOH . E 5 HOH X 115 415 85 HOH HOH . E 5 HOH X 116 416 88 HOH HOH . E 5 HOH X 117 417 22 HOH HOH . E 5 HOH X 118 418 102 HOH HOH . E 5 HOH X 119 419 124 HOH HOH . E 5 HOH X 120 420 47 HOH HOH . E 5 HOH X 121 421 114 HOH HOH . E 5 HOH X 122 422 34 HOH HOH . E 5 HOH X 123 423 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . A . D 4 6.788 -31.439 6.483 0.62 11.61 ? PA NAP 203 X 1 HETATM 2 O O1A NAP . A . D 4 6.978 -30.173 5.715 0.62 10.05 ? O1A NAP 203 X 1 HETATM 3 O O2A NAP . A . D 4 5.468 -32.077 6.301 0.62 12.32 ? O2A NAP 203 X 1 HETATM 4 O O5B NAP . A . D 4 7.986 -32.489 6.2 0.62 13.06 ? O5B NAP 203 X 1 HETATM 5 C C5B NAP . A . D 4 9.332 -32.055 6.172 0.62 14.74 ? C5B NAP 203 X 1 HETATM 6 C C4B NAP . A . D 4 10.14 -33.109 5.429 0.62 16.97 ? C4B NAP 203 X 1 HETATM 7 O O4B NAP . A . D 4 9.904 -32.978 4.042 0.62 14.05 ? O4B NAP 203 X 1 HETATM 8 C C3B NAP . A . D 4 11.655 -33.001 5.565 0.62 16.18 ? C3B NAP 203 X 1 HETATM 9 O O3B NAP . A . D 4 12.115 -33.632 6.735 0.62 14.69 ? O3B NAP 203 X 1 HETATM 10 C C2B NAP . A . D 4 12.12 -33.701 4.306 0.62 13.82 ? C2B NAP 203 X 1 HETATM 11 O O2B NAP . A . D 4 11.96 -35.083 4.452 0.62 13.88 ? O2B NAP 203 X 1 HETATM 12 C C1B NAP . A . D 4 11.056 -33.314 3.304 0.62 15.54 ? C1B NAP 203 X 1 HETATM 13 N N9A NAP . A . D 4 11.539 -32.163 2.534 0.62 15.22 ? N9A NAP 203 X 1 HETATM 14 C C8A NAP . A . D 4 11.17 -30.848 2.678 0.62 16.61 ? C8A NAP 203 X 1 HETATM 15 N N7A NAP . A . D 4 11.854 -30.114 1.766 0.62 17.74 ? N7A NAP 203 X 1 HETATM 16 C C5A NAP . A . D 4 12.658 -30.945 1.056 0.62 19.81 ? C5A NAP 203 X 1 HETATM 17 C C6A NAP . A . D 4 13.549 -30.731 0.012 0.62 20.86 ? C6A NAP 203 X 1 HETATM 18 N N6A NAP . A . D 4 13.754 -29.507 -0.464 0.62 22.84 ? N6A NAP 203 X 1 HETATM 19 N N1A NAP . A . D 4 14.239 -31.799 -0.529 0.62 19.39 ? N1A NAP 203 X 1 HETATM 20 C C2A NAP . A . D 4 14.029 -33.07 -0.035 0.62 17.24 ? C2A NAP 203 X 1 HETATM 21 N N3A NAP . A . D 4 13.14 -33.286 0.997 0.62 16.1 ? N3A NAP 203 X 1 HETATM 22 C C4A NAP . A . D 4 12.464 -32.235 1.532 0.62 18.07 ? C4A NAP 203 X 1 HETATM 23 O O3 NAP . A . D 4 6.98 -31.175 8.055 0.62 12.03 ? O3 NAP 203 X 1 HETATM 24 P PN NAP . A . D 4 6.743 -29.987 9.102 0.62 12.92 ? PN NAP 203 X 1 HETATM 25 O O1N NAP . A . D 4 7.146 -30.511 10.428 0.62 12.04 ? O1N NAP 203 X 1 HETATM 26 O O2N NAP . A . D 4 7.36 -28.765 8.548 0.62 13.43 ? O2N NAP 203 X 1 HETATM 27 O O5D NAP . A . D 4 5.136 -29.837 9.107 0.62 13.65 ? O5D NAP 203 X 1 HETATM 28 C C5D NAP . A . D 4 4.332 -30.808 9.754 0.62 11.11 ? C5D NAP 203 X 1 HETATM 29 C C4D NAP . A . D 4 3.156 -30.159 10.485 0.62 13.89 ? C4D NAP 203 X 1 HETATM 30 O O4D NAP . A . D 4 2.35 -29.465 9.553 0.62 12.04 ? O4D NAP 203 X 1 HETATM 31 C C3D NAP . A . D 4 2.226 -31.181 11.134 0.62 11.89 ? C3D NAP 203 X 1 HETATM 32 O O3D NAP . A . D 4 1.855 -30.743 12.422 0.62 11.96 ? O3D NAP 203 X 1 HETATM 33 C C2D NAP . A . D 4 0.968 -31.184 10.293 0.62 15.29 ? C2D NAP 203 X 1 HETATM 34 O O2D NAP . A . D 4 -0.16 -31.408 11.107 0.62 12.78 ? O2D NAP 203 X 1 HETATM 35 C C1D NAP . A . D 4 0.985 -29.759 9.804 0.62 11.65 ? C1D NAP 203 X 1 HETATM 36 N N1N NAP . A . D 4 0.168 -29.52 8.603 0.62 11.75 ? N1N NAP 203 X 1 HETATM 37 C C2N NAP . A . D 4 -0.843 -28.603 8.684 0.62 14.19 ? C2N NAP 203 X 1 HETATM 38 C C3N NAP . A . D 4 -1.628 -28.321 7.576 0.62 14.37 ? C3N NAP 203 X 1 HETATM 39 C C7N NAP . A . D 4 -2.79 -27.366 7.691 0.62 11.05 ? C7N NAP 203 X 1 HETATM 40 O O7N NAP . A . D 4 -3.329 -26.819 6.51 0.62 13.33 ? O7N NAP 203 X 1 HETATM 41 N N7N NAP . A . D 4 -3.291 -27.061 8.898 0.62 10.87 ? N7N NAP 203 X 1 HETATM 42 C C4N NAP . A . D 4 -1.36 -28.977 6.376 0.62 14.49 ? C4N NAP 203 X 1 HETATM 43 C C5N NAP . A . D 4 -0.325 -29.905 6.299 0.62 13.87 ? C5N NAP 203 X 1 HETATM 44 C C6N NAP . A . D 4 0.44 -30.166 7.427 0.62 15.1 ? C6N NAP 203 X 1 HETATM 45 P P2B NAP . A . D 4 13.191 -36.043 4.881 0.62 16.56 ? P2B NAP 203 X 1 HETATM 46 O O1X NAP . A . D 4 13.594 -35.65 6.275 0.62 11.2 ? O1X NAP 203 X 1 HETATM 47 O O2X NAP . A . D 4 12.664 -37.454 4.829 0.62 13.75 ? O2X NAP 203 X 1 HETATM 48 O O3X NAP . A . D 4 14.328 -35.825 3.919 0.62 13.81 ? O3X NAP 203 X 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #