data_5ITC # _model_server_result.job_id zZxOuf6IMXIQh5mgjvVdSA _model_server_result.datetime_utc '2024-11-23 20:38:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5itc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":303}' # _entry.id 5ITC # _exptl.entry_id 5ITC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.16 _cell.angle_gamma 90 _cell.entry_id 5ITC _cell.length_a 106.715 _cell.length_b 61.586 _cell.length_c 119.089 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 224 A LYS 224 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B NZ LYS 224 B LYS 224 1_555 J C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 C NZ LYS 224 C LYS 224 1_555 M C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 288 n n C10 C9 OLC doub 289 n n C10 C11 OLC sing 290 n n C9 C8 OLC sing 291 n n C17 C16 OLC sing 292 z n C11 C12 OLC sing 293 n n C8 C7 OLC sing 294 n n C24 C22 OLC sing 295 n n C24 O25 OLC sing 296 n n C16 C15 OLC sing 297 n n C12 C13 OLC sing 298 n n C7 C6 OLC sing 299 n n C15 C14 OLC sing 300 n n C13 C14 OLC sing 301 n n C6 C5 OLC sing 302 n n C5 C4 OLC sing 303 n n C4 C3 OLC sing 304 n n C3 C2 OLC sing 305 n n C2 C1 OLC sing 306 n n C21 C22 OLC sing 307 n n C21 O20 OLC sing 308 n n C1 O19 OLC doub 309 n n C1 O20 OLC sing 310 n n C22 O23 OLC sing 311 n n C18 H18 OLC sing 312 n n C18 H18A OLC sing 313 n n C18 H18B OLC sing 314 n n C10 H10 OLC sing 315 n n C9 H9 OLC sing 316 n n C17 H17 OLC sing 317 n n C17 H17A OLC sing 318 n n C11 H11 OLC sing 319 n n C11 H11A OLC sing 320 n n C8 H8 OLC sing 321 n n C8 H8A OLC sing 322 n n C24 H24 OLC sing 323 n n C24 H24A OLC sing 324 n n C16 H16 OLC sing 325 n n C16 H16A OLC sing 326 n n C12 H12 OLC sing 327 n n C12 H12A OLC sing 328 n n C7 H7 OLC sing 329 n n C7 H7A OLC sing 330 n n C15 H15 OLC sing 331 n n C15 H15A OLC sing 332 n n C13 H13 OLC sing 333 n n C13 H13A OLC sing 334 n n C6 H6 OLC sing 335 n n C6 H6A OLC sing 336 n n C14 H14 OLC sing 337 n n C14 H14A OLC sing 338 n n C5 H5 OLC sing 339 n n C5 H5A OLC sing 340 n n C4 H4 OLC sing 341 n n C4 H4A OLC sing 342 n n C3 H3 OLC sing 343 n n C3 H3A OLC sing 344 n n C2 H2 OLC sing 345 n n C2 H2A OLC sing 346 n n C21 H21 OLC sing 347 n n C21 H21A OLC sing 348 n n C22 H22 OLC sing 349 n n O25 HO25 OLC sing 350 n n O23 HO23 OLC sing 351 n n # _atom_sites.entry_id 5ITC _atom_sites.fract_transf_matrix[1][1] 0.009371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004603 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 301 301 RET RET . E 3 OLC A 1 302 1 OLC OLC . F 4 OLB A 1 303 2 OLB OLB . G 3 OLC A 1 304 4 OLC OLC . H 4 OLB A 1 305 6 OLB OLB . I 4 OLB A 1 306 7 OLB OLB . J 2 RET B 1 301 303 RET RET . K 4 OLB B 1 302 5 OLB OLB . L 4 OLB B 1 303 9 OLB OLB . M 2 RET C 1 301 302 RET RET . N 4 OLB C 1 302 3 OLB OLB . O 3 OLC C 1 303 8 OLC OLC . P 4 OLB C 1 304 10 OLB OLB . Q 5 HOH A 1 401 75 HOH HOH . Q 5 HOH A 2 402 177 HOH HOH . Q 5 HOH A 3 403 77 HOH HOH . Q 5 HOH A 4 404 6 HOH HOH . Q 5 HOH A 5 405 8 HOH HOH . Q 5 HOH A 6 406 136 HOH HOH . Q 5 HOH A 7 407 153 HOH HOH . Q 5 HOH A 8 408 154 HOH HOH . Q 5 HOH A 9 409 140 HOH HOH . Q 5 HOH A 10 410 97 HOH HOH . Q 5 HOH A 11 411 54 HOH HOH . Q 5 HOH A 12 412 159 HOH HOH . Q 5 HOH A 13 413 156 HOH HOH . Q 5 HOH A 14 414 47 HOH HOH . Q 5 HOH A 15 415 12 HOH HOH . Q 5 HOH A 16 416 5 HOH HOH . Q 5 HOH A 17 417 152 HOH HOH . Q 5 HOH A 18 418 41 HOH HOH . Q 5 HOH A 19 419 11 HOH HOH . Q 5 HOH A 20 420 96 HOH HOH . Q 5 HOH A 21 421 42 HOH HOH . Q 5 HOH A 22 422 131 HOH HOH . Q 5 HOH A 23 423 88 HOH HOH . Q 5 HOH A 24 424 33 HOH HOH . Q 5 HOH A 25 425 87 HOH HOH . Q 5 HOH A 26 426 7 HOH HOH . Q 5 HOH A 27 427 30 HOH HOH . Q 5 HOH A 28 428 52 HOH HOH . Q 5 HOH A 29 429 63 HOH HOH . Q 5 HOH A 30 430 3 HOH HOH . Q 5 HOH A 31 431 82 HOH HOH . Q 5 HOH A 32 432 2 HOH HOH . Q 5 HOH A 33 433 84 HOH HOH . Q 5 HOH A 34 434 4 HOH HOH . Q 5 HOH A 35 435 14 HOH HOH . Q 5 HOH A 36 436 125 HOH HOH . Q 5 HOH A 37 437 46 HOH HOH . Q 5 HOH A 38 438 174 HOH HOH . Q 5 HOH A 39 439 29 HOH HOH . Q 5 HOH A 40 440 76 HOH HOH . Q 5 HOH A 41 441 91 HOH HOH . Q 5 HOH A 42 442 126 HOH HOH . Q 5 HOH A 43 443 24 HOH HOH . Q 5 HOH A 44 444 15 HOH HOH . Q 5 HOH A 45 445 18 HOH HOH . Q 5 HOH A 46 446 36 HOH HOH . Q 5 HOH A 47 447 62 HOH HOH . Q 5 HOH A 48 448 171 HOH HOH . Q 5 HOH A 49 449 31 HOH HOH . Q 5 HOH A 50 450 16 HOH HOH . Q 5 HOH A 51 451 141 HOH HOH . Q 5 HOH A 52 452 13 HOH HOH . Q 5 HOH A 53 453 148 HOH HOH . Q 5 HOH A 54 454 163 HOH HOH . Q 5 HOH A 55 455 89 HOH HOH . Q 5 HOH A 56 456 160 HOH HOH . Q 5 HOH A 57 457 180 HOH HOH . R 5 HOH B 1 401 109 HOH HOH . R 5 HOH B 2 402 146 HOH HOH . R 5 HOH B 3 403 67 HOH HOH . R 5 HOH B 4 404 147 HOH HOH . R 5 HOH B 5 405 102 HOH HOH . R 5 HOH B 6 406 143 HOH HOH . R 5 HOH B 7 407 175 HOH HOH . R 5 HOH B 8 408 110 HOH HOH . R 5 HOH B 9 409 111 HOH HOH . R 5 HOH B 10 410 145 HOH HOH . R 5 HOH B 11 411 27 HOH HOH . R 5 HOH B 12 412 19 HOH HOH . R 5 HOH B 13 413 32 HOH HOH . R 5 HOH B 14 414 103 HOH HOH . R 5 HOH B 15 415 50 HOH HOH . R 5 HOH B 16 416 59 HOH HOH . R 5 HOH B 17 417 68 HOH HOH . R 5 HOH B 18 418 101 HOH HOH . R 5 HOH B 19 419 179 HOH HOH . R 5 HOH B 20 420 9 HOH HOH . R 5 HOH B 21 421 162 HOH HOH . R 5 HOH B 22 422 150 HOH HOH . R 5 HOH B 23 423 155 HOH HOH . R 5 HOH B 24 424 115 HOH HOH . R 5 HOH B 25 425 55 HOH HOH . R 5 HOH B 26 426 127 HOH HOH . R 5 HOH B 27 427 98 HOH HOH . R 5 HOH B 28 428 108 HOH HOH . R 5 HOH B 29 429 112 HOH HOH . R 5 HOH B 30 430 149 HOH HOH . R 5 HOH B 31 431 25 HOH HOH . R 5 HOH B 32 432 144 HOH HOH . R 5 HOH B 33 433 107 HOH HOH . R 5 HOH B 34 434 113 HOH HOH . R 5 HOH B 35 435 10 HOH HOH . R 5 HOH B 36 436 114 HOH HOH . R 5 HOH B 37 437 37 HOH HOH . R 5 HOH B 38 438 142 HOH HOH . R 5 HOH B 39 439 129 HOH HOH . R 5 HOH B 40 440 99 HOH HOH . R 5 HOH B 41 441 161 HOH HOH . R 5 HOH B 42 442 38 HOH HOH . R 5 HOH B 43 443 43 HOH HOH . R 5 HOH B 44 444 60 HOH HOH . R 5 HOH B 45 445 94 HOH HOH . R 5 HOH B 46 446 130 HOH HOH . R 5 HOH B 47 447 35 HOH HOH . R 5 HOH B 48 448 86 HOH HOH . R 5 HOH B 49 449 176 HOH HOH . R 5 HOH B 50 450 85 HOH HOH . R 5 HOH B 51 451 151 HOH HOH . R 5 HOH B 52 452 173 HOH HOH . S 5 HOH C 1 401 57 HOH HOH . S 5 HOH C 2 402 137 HOH HOH . S 5 HOH C 3 403 122 HOH HOH . S 5 HOH C 4 404 48 HOH HOH . S 5 HOH C 5 405 23 HOH HOH . S 5 HOH C 6 406 80 HOH HOH . S 5 HOH C 7 407 165 HOH HOH . S 5 HOH C 8 408 40 HOH HOH . S 5 HOH C 9 409 118 HOH HOH . S 5 HOH C 10 410 21 HOH HOH . S 5 HOH C 11 411 65 HOH HOH . S 5 HOH C 12 412 78 HOH HOH . S 5 HOH C 13 413 93 HOH HOH . S 5 HOH C 14 414 49 HOH HOH . S 5 HOH C 15 415 120 HOH HOH . S 5 HOH C 16 416 169 HOH HOH . S 5 HOH C 17 417 79 HOH HOH . S 5 HOH C 18 418 39 HOH HOH . S 5 HOH C 19 419 117 HOH HOH . S 5 HOH C 20 420 119 HOH HOH . S 5 HOH C 21 421 74 HOH HOH . S 5 HOH C 22 422 1 HOH HOH . S 5 HOH C 23 423 51 HOH HOH . S 5 HOH C 24 424 61 HOH HOH . S 5 HOH C 25 425 128 HOH HOH . S 5 HOH C 26 426 167 HOH HOH . S 5 HOH C 27 427 164 HOH HOH . S 5 HOH C 28 428 66 HOH HOH . S 5 HOH C 29 429 116 HOH HOH . S 5 HOH C 30 430 121 HOH HOH . S 5 HOH C 31 431 181 HOH HOH . S 5 HOH C 32 432 28 HOH HOH . S 5 HOH C 33 433 166 HOH HOH . S 5 HOH C 34 434 44 HOH HOH . S 5 HOH C 35 435 158 HOH HOH . S 5 HOH C 36 436 135 HOH HOH . S 5 HOH C 37 437 106 HOH HOH . S 5 HOH C 38 438 134 HOH HOH . S 5 HOH C 39 439 123 HOH HOH . S 5 HOH C 40 440 124 HOH HOH . S 5 HOH C 41 441 92 HOH HOH . S 5 HOH C 42 442 34 HOH HOH . S 5 HOH C 43 443 90 HOH HOH . S 5 HOH C 44 444 168 HOH HOH . S 5 HOH C 45 445 138 HOH HOH . S 5 HOH C 46 446 170 HOH HOH . S 5 HOH C 47 447 105 HOH HOH . S 5 HOH C 48 448 133 HOH HOH . S 5 HOH C 49 449 178 HOH HOH . S 5 HOH C 50 450 26 HOH HOH . S 5 HOH C 51 451 81 HOH HOH . S 5 HOH C 52 452 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . O 3 79.906 -19.519 141.347 1 47.45 ? C18 OLC 303 C 1 HETATM 2 C C10 OLC . . . O 3 77.524 -16.637 132.853 1 46.58 ? C10 OLC 303 C 1 HETATM 3 C C9 OLC . . . O 3 77.077 -16.283 131.636 1 46.92 ? C9 OLC 303 C 1 HETATM 4 C C17 OLC . . . O 3 78.957 -19.286 140.153 1 48.35 ? C17 OLC 303 C 1 HETATM 5 C C11 OLC . . . O 3 79.017 -16.941 133.072 1 46.24 ? C11 OLC 303 C 1 HETATM 6 C C8 OLC . . . O 3 78.06 -16.165 130.453 1 47.78 ? C8 OLC 303 C 1 HETATM 7 C C24 OLC . . . O 3 83.161 -18.996 118.78 1 53.52 ? C24 OLC 303 C 1 HETATM 8 C C16 OLC . . . O 3 79.711 -18.541 139.031 1 48.35 ? C16 OLC 303 C 1 HETATM 9 C C12 OLC . . . O 3 79.438 -16.478 134.483 1 46.5 ? C12 OLC 303 C 1 HETATM 10 C C7 OLC . . . O 3 77.289 -16.336 129.124 1 47.06 ? C7 OLC 303 C 1 HETATM 11 C C15 OLC . . . O 3 78.72 -18.161 137.906 1 47.44 ? C15 OLC 303 C 1 HETATM 12 C C13 OLC . . . O 3 78.657 -17.279 135.544 1 46.78 ? C13 OLC 303 C 1 HETATM 13 C C6 OLC . . . O 3 78.184 -15.886 127.948 1 46.95 ? C6 OLC 303 C 1 HETATM 14 C C14 OLC . . . O 3 79.428 -17.25 136.88 1 46.62 ? C14 OLC 303 C 1 HETATM 15 C C5 OLC . . . O 3 77.617 -16.439 126.623 1 47.41 ? C5 OLC 303 C 1 HETATM 16 C C4 OLC . . . O 3 78.473 -17.634 126.156 1 48.39 ? C4 OLC 303 C 1 HETATM 17 C C3 OLC . . . O 3 78.485 -17.692 124.614 1 50.35 ? C3 OLC 303 C 1 HETATM 18 C C2 OLC . . . O 3 79.857 -18.207 124.131 1 52.17 ? C2 OLC 303 C 1 HETATM 19 C C21 OLC . . . O 3 81.39 -18.723 120.555 1 53.25 ? C21 OLC 303 C 1 HETATM 20 C C1 OLC . . . O 3 79.923 -18.147 122.59 1 53.38 ? C1 OLC 303 C 1 HETATM 21 C C22 OLC . . . O 3 82.828 -19.21 120.269 1 53.72 ? C22 OLC 303 C 1 HETATM 22 O O19 OLC . . . O 3 78.931 -17.769 121.965 1 55.26 ? O19 OLC 303 C 1 HETATM 23 O O25 OLC . . . O 3 82.64 -19.968 117.872 1 52.19 ? O25 OLC 303 C 1 HETATM 24 O O23 OLC . . . O 3 83.779 -18.413 120.977 1 56.25 ? O23 OLC 303 C 1 HETATM 25 O O20 OLC . . . O 3 81.149 -18.557 121.961 1 53.31 ? O20 OLC 303 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 597 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #