data_5ITD
#
_model_server_result.job_id            PN0HU4GQrBPrSH5XMyNA7A 
_model_server_result.datetime_utc      '2025-07-07 19:07:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5itd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    5ITD 
#
_exptl.entry_id    5ITD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              492.529 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{4-[3-(4-acetylpiperazine-1-carbonyl)phenyl]quinazolin-6-yl}-2-methoxypyridine-3-carbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ITD 
_cell.length_a            104.645 
_cell.length_b            107.352 
_cell.length_c            134.502 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ITD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H24 N6 O3' 
_chem_comp.formula_weight    492.529 
_chem_comp.id                6CY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{4-[3-(4-acetylpiperazine-1-carbonyl)phenyl]quinazolin-6-yl}-2-methoxypyridine-3-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N31 C29 6CY doub 1 n y 
N31 C32 6CY sing 2 n y 
C39 C32 6CY doub 3 n y 
C39 C37 6CY sing 4 n y 
C29 N28 6CY sing 5 n y 
C32 C33 6CY sing 6 n y 
C37 C36 6CY doub 7 n y 
N28 C27 6CY doub 8 n y 
C33 C27 6CY sing 9 n y 
C33 C34 6CY doub 10 n y 
C42 N44 6CY doub 11 n y 
C42 C41 6CY sing 12 n y 
C36 C34 6CY sing 13 n y 
C36 C41 6CY sing 14 n n 
C27 C20 6CY sing 15 n n 
N44 C45 6CY sing 16 n y 
C21 C20 6CY doub 17 n y 
C21 C23 6CY sing 18 n y 
C41 C47 6CY doub 19 n y 
C20 C18 6CY sing 20 n y 
C23 C25 6CY doub 21 n y 
C45 O51 6CY sing 22 n n 
C45 C46 6CY doub 23 n y 
C47 C46 6CY sing 24 n y 
C18 C17 6CY doub 25 n y 
C25 C17 6CY sing 26 n y 
O51 C52 6CY sing 27 n n 
C46 C49 6CY sing 28 n n 
C9 C12 6CY sing 29 n n 
C9 N8 6CY sing 30 n n 
C17 C15 6CY sing 31 n n 
C12 N1 6CY sing 32 n n 
C58 C56 6CY sing 33 n n 
N8 C15 6CY sing 34 n n 
N8 C5 6CY sing 35 n n 
C15 O16 6CY doub 36 n n 
C49 N50 6CY trip 37 n n 
N1 C56 6CY sing 38 n n 
N1 C2 6CY sing 39 n n 
C56 O57 6CY doub 40 n n 
C5 C2 6CY sing 41 n n 
C2 H1 6CY sing 42 n n 
C2 H2 6CY sing 43 n n 
C42 H3 6CY sing 44 n n 
C47 H4 6CY sing 45 n n 
C52 H5 6CY sing 46 n n 
C52 H6 6CY sing 47 n n 
C52 H7 6CY sing 48 n n 
C58 H8 6CY sing 49 n n 
C58 H9 6CY sing 50 n n 
C58 H10 6CY sing 51 n n 
C12 H11 6CY sing 52 n n 
C12 H12 6CY sing 53 n n 
C18 H13 6CY sing 54 n n 
C21 H14 6CY sing 55 n n 
C23 H15 6CY sing 56 n n 
C25 H16 6CY sing 57 n n 
C29 H17 6CY sing 58 n n 
C5 H18 6CY sing 59 n n 
C5 H19 6CY sing 60 n n 
C9 H20 6CY sing 61 n n 
C9 H21 6CY sing 62 n n 
C34 H22 6CY sing 63 n n 
C37 H23 6CY sing 64 n n 
C39 H24 6CY sing 65 n n 
#
_atom_sites.entry_id                     5ITD 
_atom_sites.fract_transf_matrix[1][1]    0.009556 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009315 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007435 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 6CY A 1 1101 1 6CY LI1 . 
D 4 HOH A 1 1201 3 HOH HOH . 
D 4 HOH A 2 1202 11 HOH HOH . 
D 4 HOH A 3 1203 10 HOH HOH . 
D 4 HOH A 4 1204 5 HOH HOH . 
D 4 HOH A 5 1205 8 HOH HOH . 
D 4 HOH A 6 1206 12 HOH HOH . 
D 4 HOH A 7 1207 14 HOH HOH . 
D 4 HOH A 8 1208 6 HOH HOH . 
D 4 HOH A 9 1209 20 HOH HOH . 
D 4 HOH A 10 1210 13 HOH HOH . 
D 4 HOH A 11 1211 7 HOH HOH . 
D 4 HOH A 12 1212 17 HOH HOH . 
D 4 HOH A 13 1213 15 HOH HOH . 
D 4 HOH A 14 1214 9 HOH HOH . 
D 4 HOH A 15 1215 4 HOH HOH . 
D 4 HOH A 16 1216 1 HOH HOH . 
D 4 HOH A 17 1217 2 HOH HOH . 
D 4 HOH A 18 1218 16 HOH HOH . 
D 4 HOH A 19 1219 21 HOH HOH . 
D 4 HOH A 20 1220 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 6CY . . . C 3 4.587 3.558 -13.605 1 127.89 ? C2 6CY 1101 A 1 
HETATM 2 C C41 6CY . . . C 3 -3.259 11.437 -19.452 1 42.85 ? C41 6CY 1101 A 1 
HETATM 3 C C42 6CY . . . C 3 -4.498 11.868 -19.977 1 48.53 ? C42 6CY 1101 A 1 
HETATM 4 C C45 6CY . . . C 3 -3.825 11.518 -22.181 1 51.95 ? C45 6CY 1101 A 1 
HETATM 5 C C46 6CY . . . C 3 -2.548 11.09 -21.758 1 46.69 ? C46 6CY 1101 A 1 
HETATM 6 C C47 6CY . . . C 3 -2.275 11.052 -20.382 1 47.55 ? C47 6CY 1101 A 1 
HETATM 7 C C49 6CY . . . C 3 -1.538 10.653 -22.709 1 52.99 ? C49 6CY 1101 A 1 
HETATM 8 C C52 6CY . . . C 3 -5.435 11.886 -23.936 1 54.85 ? C52 6CY 1101 A 1 
HETATM 9 C C56 6CY . . . C 3 3.681 1.254 -13.077 1 122.65 ? C56 6CY 1101 A 1 
HETATM 10 C C58 6CY . . . C 3 5.055 0.599 -13.237 1 117.29 ? C58 6CY 1101 A 1 
HETATM 11 C C12 6CY . . . C 3 2.248 3.277 -13.114 1 121.34 ? C12 6CY 1101 A 1 
HETATM 12 C C15 6CY . . . C 3 2.611 5.916 -15.767 1 92 ? C15 6CY 1101 A 1 
HETATM 13 C C17 6CY . . . C 3 1.215 6.44 -16.016 1 84.38 ? C17 6CY 1101 A 1 
HETATM 14 C C18 6CY . . . C 3 0.728 7.674 -15.495 1 77.15 ? C18 6CY 1101 A 1 
HETATM 15 C C20 6CY . . . C 3 -0.587 8.146 -15.79 1 63.65 ? C20 6CY 1101 A 1 
HETATM 16 C C21 6CY . . . C 3 -1.389 7.332 -16.619 1 59.94 ? C21 6CY 1101 A 1 
HETATM 17 C C23 6CY . . . C 3 -0.923 6.121 -17.158 1 75.96 ? C23 6CY 1101 A 1 
HETATM 18 C C25 6CY . . . C 3 0.379 5.684 -16.864 1 86.83 ? C25 6CY 1101 A 1 
HETATM 19 C C27 6CY . . . C 3 -1.185 9.412 -15.266 1 54.37 ? C27 6CY 1101 A 1 
HETATM 20 C C29 6CY . . . C 3 -1.478 10.635 -13.343 1 56.63 ? C29 6CY 1101 A 1 
HETATM 21 N N1 6CY . . . C 3 3.537 2.596 -13.248 1 129.62 ? N1 6CY 1101 A 1 
HETATM 22 C C5 6CY . . . C 3 4.242 4.288 -14.927 1 120.25 ? C5 6CY 1101 A 1 
HETATM 23 N N8 6CY . . . C 3 2.845 4.751 -15.088 1 106.15 ? N8 6CY 1101 A 1 
HETATM 24 C C9 6CY . . . C 3 1.833 3.864 -14.475 1 111.57 ? C9 6CY 1101 A 1 
HETATM 25 O O16 6CY . . . C 3 3.538 6.556 -16.254 1 88.01 ? O16 6CY 1101 A 1 
HETATM 26 N N28 6CY . . . C 3 -0.992 9.561 -13.942 1 60.62 ? N28 6CY 1101 A 1 
HETATM 27 N N31 6CY . . . C 3 -2.162 11.606 -13.919 1 41.29 ? N31 6CY 1101 A 1 
HETATM 28 C C32 6CY . . . C 3 -2.388 11.505 -15.231 1 48.4 ? C32 6CY 1101 A 1 
HETATM 29 C C33 6CY . . . C 3 -1.924 10.404 -15.996 1 52.28 ? C33 6CY 1101 A 1 
HETATM 30 C C34 6CY . . . C 3 -2.216 10.388 -17.392 1 52.17 ? C34 6CY 1101 A 1 
HETATM 31 C C36 6CY . . . C 3 -2.959 11.425 -18.013 1 50.2 ? C36 6CY 1101 A 1 
HETATM 32 C C37 6CY . . . C 3 -3.4 12.504 -17.228 1 47.49 ? C37 6CY 1101 A 1 
HETATM 33 C C39 6CY . . . C 3 -3.118 12.532 -15.855 1 47.51 ? C39 6CY 1101 A 1 
HETATM 34 N N44 6CY . . . C 3 -4.778 11.903 -21.297 1 54.72 ? N44 6CY 1101 A 1 
HETATM 35 N N50 6CY . . . C 3 -0.689 10.357 -23.438 1 53.02 ? N50 6CY 1101 A 1 
HETATM 36 O O51 6CY . . . C 3 -4.113 11.557 -23.53 1 50.95 ? O51 6CY 1101 A 1 
HETATM 37 O O57 6CY . . . C 3 2.73 0.526 -12.798 1 117.94 ? O57 6CY 1101 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           37 
#