data_5ITD
#
_model_server_result.job_id            yT6wKzWRKjbK0t1yz-GWCw 
_model_server_result.datetime_utc      '2024-12-09 06:44:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5itd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    5ITD 
#
_exptl.entry_id    5ITD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              492.529 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{4-[3-(4-acetylpiperazine-1-carbonyl)phenyl]quinazolin-6-yl}-2-methoxypyridine-3-carbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ITD 
_cell.length_a            104.645 
_cell.length_b            107.352 
_cell.length_c            134.502 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ITD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H24 N6 O3' 
_chem_comp.formula_weight    492.529 
_chem_comp.id                6CY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{4-[3-(4-acetylpiperazine-1-carbonyl)phenyl]quinazolin-6-yl}-2-methoxypyridine-3-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N31 C29 6CY doub 1 n y 
N31 C32 6CY sing 2 n y 
C39 C32 6CY doub 3 n y 
C39 C37 6CY sing 4 n y 
C29 N28 6CY sing 5 n y 
C32 C33 6CY sing 6 n y 
C37 C36 6CY doub 7 n y 
N28 C27 6CY doub 8 n y 
C33 C27 6CY sing 9 n y 
C33 C34 6CY doub 10 n y 
C42 N44 6CY doub 11 n y 
C42 C41 6CY sing 12 n y 
C36 C34 6CY sing 13 n y 
C36 C41 6CY sing 14 n n 
C27 C20 6CY sing 15 n n 
N44 C45 6CY sing 16 n y 
C21 C20 6CY doub 17 n y 
C21 C23 6CY sing 18 n y 
C41 C47 6CY doub 19 n y 
C20 C18 6CY sing 20 n y 
C23 C25 6CY doub 21 n y 
C45 O51 6CY sing 22 n n 
C45 C46 6CY doub 23 n y 
C47 C46 6CY sing 24 n y 
C18 C17 6CY doub 25 n y 
C25 C17 6CY sing 26 n y 
O51 C52 6CY sing 27 n n 
C46 C49 6CY sing 28 n n 
C9 C12 6CY sing 29 n n 
C9 N8 6CY sing 30 n n 
C17 C15 6CY sing 31 n n 
C12 N1 6CY sing 32 n n 
C58 C56 6CY sing 33 n n 
N8 C15 6CY sing 34 n n 
N8 C5 6CY sing 35 n n 
C15 O16 6CY doub 36 n n 
C49 N50 6CY trip 37 n n 
N1 C56 6CY sing 38 n n 
N1 C2 6CY sing 39 n n 
C56 O57 6CY doub 40 n n 
C5 C2 6CY sing 41 n n 
C2 H1 6CY sing 42 n n 
C2 H2 6CY sing 43 n n 
C42 H3 6CY sing 44 n n 
C47 H4 6CY sing 45 n n 
C52 H5 6CY sing 46 n n 
C52 H6 6CY sing 47 n n 
C52 H7 6CY sing 48 n n 
C58 H8 6CY sing 49 n n 
C58 H9 6CY sing 50 n n 
C58 H10 6CY sing 51 n n 
C12 H11 6CY sing 52 n n 
C12 H12 6CY sing 53 n n 
C18 H13 6CY sing 54 n n 
C21 H14 6CY sing 55 n n 
C23 H15 6CY sing 56 n n 
C25 H16 6CY sing 57 n n 
C29 H17 6CY sing 58 n n 
C5 H18 6CY sing 59 n n 
C5 H19 6CY sing 60 n n 
C9 H20 6CY sing 61 n n 
C9 H21 6CY sing 62 n n 
C34 H22 6CY sing 63 n n 
C37 H23 6CY sing 64 n n 
C39 H24 6CY sing 65 n n 
#
_atom_sites.entry_id                     5ITD 
_atom_sites.fract_transf_matrix[1][1]    0.009556 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009315 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007435 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 6CY A 1 1101 1 6CY LI1 . 
D 4 HOH A 1 1201 3 HOH HOH . 
D 4 HOH A 2 1202 10 HOH HOH . 
D 4 HOH A 3 1203 34 HOH HOH . 
D 4 HOH A 4 1204 37 HOH HOH . 
D 4 HOH A 5 1205 47 HOH HOH . 
D 4 HOH A 6 1206 42 HOH HOH . 
D 4 HOH A 7 1207 5 HOH HOH . 
D 4 HOH A 8 1208 51 HOH HOH . 
D 4 HOH A 9 1209 39 HOH HOH . 
D 4 HOH A 10 1210 49 HOH HOH . 
D 4 HOH A 11 1211 40 HOH HOH . 
D 4 HOH A 12 1212 7 HOH HOH . 
D 4 HOH A 13 1213 26 HOH HOH . 
D 4 HOH A 14 1214 16 HOH HOH . 
D 4 HOH A 15 1215 45 HOH HOH . 
D 4 HOH A 16 1216 21 HOH HOH . 
D 4 HOH A 17 1217 12 HOH HOH . 
D 4 HOH A 18 1218 27 HOH HOH . 
D 4 HOH A 19 1219 25 HOH HOH . 
D 4 HOH A 20 1220 44 HOH HOH . 
D 4 HOH A 21 1221 4 HOH HOH . 
D 4 HOH A 22 1222 46 HOH HOH . 
D 4 HOH A 23 1223 6 HOH HOH . 
D 4 HOH A 24 1224 32 HOH HOH . 
D 4 HOH A 25 1225 11 HOH HOH . 
D 4 HOH A 26 1226 50 HOH HOH . 
D 4 HOH A 27 1227 31 HOH HOH . 
D 4 HOH A 28 1228 2 HOH HOH . 
D 4 HOH A 29 1229 14 HOH HOH . 
D 4 HOH A 30 1230 13 HOH HOH . 
D 4 HOH A 31 1231 15 HOH HOH . 
D 4 HOH A 32 1232 38 HOH HOH . 
D 4 HOH A 33 1233 17 HOH HOH . 
D 4 HOH A 34 1234 9 HOH HOH . 
D 4 HOH A 35 1235 18 HOH HOH . 
D 4 HOH A 36 1236 24 HOH HOH . 
D 4 HOH A 37 1237 22 HOH HOH . 
D 4 HOH A 38 1238 19 HOH HOH . 
D 4 HOH A 39 1239 35 HOH HOH . 
D 4 HOH A 40 1240 30 HOH HOH . 
D 4 HOH A 41 1241 48 HOH HOH . 
D 4 HOH A 42 1242 23 HOH HOH . 
D 4 HOH A 43 1243 43 HOH HOH . 
D 4 HOH A 44 1244 20 HOH HOH . 
D 4 HOH A 45 1245 41 HOH HOH . 
D 4 HOH A 46 1246 33 HOH HOH . 
D 4 HOH A 47 1247 1 HOH HOH . 
D 4 HOH A 48 1248 28 HOH HOH . 
D 4 HOH A 49 1249 8 HOH HOH . 
D 4 HOH A 50 1250 36 HOH HOH . 
D 4 HOH A 51 1251 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 6CY . . . C 3 -0.448 110.023 13.993 1 104.49 ? C2 6CY 1101 A 1 
HETATM 2 C C41 6CY . . . C 3 3.349 118.776 19.415 1 54.67 ? C41 6CY 1101 A 1 
HETATM 3 C C42 6CY . . . C 3 4.584 119.136 19.965 1 55.82 ? C42 6CY 1101 A 1 
HETATM 4 C C45 6CY . . . C 3 3.747 118.872 22.181 1 55.73 ? C45 6CY 1101 A 1 
HETATM 5 C C46 6CY . . . C 3 2.484 118.486 21.689 1 55.91 ? C46 6CY 1101 A 1 
HETATM 6 C C47 6CY . . . C 3 2.288 118.461 20.294 1 56.06 ? C47 6CY 1101 A 1 
HETATM 7 C C49 6CY . . . C 3 1.423 118.14 22.609 1 55.88 ? C49 6CY 1101 A 1 
HETATM 8 C C52 6CY . . . C 3 5.033 119.616 24.144 1 54.83 ? C52 6CY 1101 A 1 
HETATM 9 C C56 6CY . . . C 3 -1.858 107.954 13.862 1 109.42 ? C56 6CY 1101 A 1 
HETATM 10 C C58 6CY . . . C 3 -0.711 106.988 14.093 1 109.62 ? C58 6CY 1101 A 1 
HETATM 11 C C12 6CY . . . C 3 -2.907 110.249 13.596 1 104.42 ? C12 6CY 1101 A 1 
HETATM 12 C C15 6CY . . . C 3 -1.707 113.059 15.612 1 88.59 ? C15 6CY 1101 A 1 
HETATM 13 C C17 6CY . . . C 3 -0.378 113.712 15.997 1 78.25 ? C17 6CY 1101 A 1 
HETATM 14 C C18 6CY . . . C 3 0.026 114.916 15.404 1 71.72 ? C18 6CY 1101 A 1 
HETATM 15 C C20 6CY . . . C 3 1.233 115.514 15.789 1 65.58 ? C20 6CY 1101 A 1 
HETATM 16 C C21 6CY . . . C 3 2.103 114.845 16.677 1 67.67 ? C21 6CY 1101 A 1 
HETATM 17 C C23 6CY . . . C 3 1.724 113.643 17.283 1 71.56 ? C23 6CY 1101 A 1 
HETATM 18 C C25 6CY . . . C 3 0.479 113.097 16.937 1 75.17 ? C25 6CY 1101 A 1 
HETATM 19 C C27 6CY . . . C 3 1.619 116.815 15.18 1 58.77 ? C27 6CY 1101 A 1 
HETATM 20 C C29 6CY . . . C 3 1.717 118.135 13.224 1 56.09 ? C29 6CY 1101 A 1 
HETATM 21 N N1 6CY . . . C 3 -1.748 109.344 13.798 1 107.28 ? N1 6CY 1101 A 1 
HETATM 22 C C5 6CY . . . C 3 -0.598 110.851 15.302 1 101.81 ? C5 6CY 1101 A 1 
HETATM 23 N N8 6CY . . . C 3 -1.805 111.717 15.287 1 97.77 ? N8 6CY 1101 A 1 
HETATM 24 C C9 6CY . . . C 3 -3.093 111.095 14.899 1 101.44 ? C9 6CY 1101 A 1 
HETATM 25 O O16 6CY . . . C 3 -2.68 113.822 15.589 1 88.56 ? O16 6CY 1101 A 1 
HETATM 26 N N28 6CY . . . C 3 1.343 117.013 13.874 1 59.06 ? N28 6CY 1101 A 1 
HETATM 27 N N31 6CY . . . C 3 2.325 119.127 13.887 1 52.31 ? N31 6CY 1101 A 1 
HETATM 28 C C32 6CY . . . C 3 2.608 118.999 15.191 1 51.52 ? C32 6CY 1101 A 1 
HETATM 29 C C33 6CY . . . C 3 2.204 117.861 15.906 1 53.26 ? C33 6CY 1101 A 1 
HETATM 30 C C34 6CY . . . C 3 2.487 117.787 17.279 1 53.2 ? C34 6CY 1101 A 1 
HETATM 31 C C36 6CY . . . C 3 3.143 118.832 17.942 1 53.24 ? C36 6CY 1101 A 1 
HETATM 32 C C37 6CY . . . C 3 3.505 119.985 17.22 1 53.06 ? C37 6CY 1101 A 1 
HETATM 33 C C39 6CY . . . C 3 3.254 120.057 15.839 1 52.78 ? C39 6CY 1101 A 1 
HETATM 34 N N44 6CY . . . C 3 4.754 119.157 21.31 1 56.32 ? N44 6CY 1101 A 1 
HETATM 35 N N50 6CY . . . C 3 0.592 117.852 23.357 1 55.75 ? N50 6CY 1101 A 1 
HETATM 36 O O51 6CY . . . C 3 3.942 118.887 23.568 1 55.44 ? O51 6CY 1101 A 1 
HETATM 37 O O57 6CY . . . C 3 -2.921 107.36 13.723 1 109.23 ? O57 6CY 1101 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           37 
#