data_5ITE
#
_model_server_result.job_id            PjcZF94quLB38kc-FTkYjw 
_model_server_result.datetime_utc      '2024-11-01 21:33:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ite 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5ITE 
#
_exptl.entry_id    5ITE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.8 
_cell.angle_gamma         90 
_cell.entry_id            5ITE 
_cell.length_a            106.442 
_cell.length_b            61.565 
_cell.length_c            119.689 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ITE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 224 A LYS 224 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B NZ LYS 224 B LYS 224 1_555 G C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 C NZ LYS 224 C LYS 224 1_555 L C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 392 n n 
C1 C6 RET sing 393 n n 
C1 C16 RET sing 394 n n 
C1 C17 RET sing 395 n n 
C2 C3 RET sing 396 n n 
C2 H21 RET sing 397 n n 
C2 H22 RET sing 398 n n 
C3 C4 RET sing 399 n n 
C3 H31 RET sing 400 n n 
C3 H32 RET sing 401 n n 
C4 C5 RET sing 402 n n 
C4 H41 RET sing 403 n n 
C4 H42 RET sing 404 n n 
C5 C6 RET doub 405 n n 
C5 C18 RET sing 406 n n 
C6 C7 RET sing 407 n n 
C7 C8 RET doub 408 e n 
C7 H7 RET sing 409 n n 
C8 C9 RET sing 410 n n 
C8 H8 RET sing 411 n n 
C9 C10 RET doub 412 e n 
C9 C19 RET sing 413 n n 
C10 C11 RET sing 414 n n 
C10 H10 RET sing 415 n n 
C11 C12 RET doub 416 e n 
C11 H11 RET sing 417 n n 
C12 C13 RET sing 418 n n 
C12 H12 RET sing 419 n n 
C13 C14 RET doub 420 e n 
C13 C20 RET sing 421 n n 
C14 C15 RET sing 422 n n 
C14 H14 RET sing 423 n n 
C15 O1 RET doub 424 n n 
C15 H15 RET sing 425 n n 
C16 H161 RET sing 426 n n 
C16 H162 RET sing 427 n n 
C16 H163 RET sing 428 n n 
C17 H171 RET sing 429 n n 
C17 H172 RET sing 430 n n 
C17 H173 RET sing 431 n n 
C18 H181 RET sing 432 n n 
C18 H182 RET sing 433 n n 
C18 H183 RET sing 434 n n 
C19 H191 RET sing 435 n n 
C19 H192 RET sing 436 n n 
C19 H193 RET sing 437 n n 
C20 H201 RET sing 438 n n 
C20 H202 RET sing 439 n n 
C20 H203 RET sing 440 n n 
#
_atom_sites.entry_id                     5ITE 
_atom_sites.fract_transf_matrix[1][1]    0.009395 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004745 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016243 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00936 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 RET A 1 301 301 RET RET . 
E 3 OLB A 1 302 6 OLB OLB . 
F 4 OLC A 1 303 8 OLC OLC . 
G 2 RET B 1 301 303 RET RET . 
H 4 OLC B 1 302 3 OLC OLC . 
I 4 OLC B 1 303 4 OLC OLC . 
J 4 OLC B 1 304 7 OLC OLC . 
K 3 OLB B 1 305 10 OLB OLB . 
L 2 RET C 1 301 302 RET RET . 
M 4 OLC C 1 302 1 OLC OLC . 
N 4 OLC C 1 303 2 OLC OLC . 
O 3 OLB C 1 304 9 OLB OLB . 
P 5 HOH A 1 401 23 HOH HOH . 
P 5 HOH A 2 402 1 HOH HOH . 
P 5 HOH A 3 403 55 HOH HOH . 
P 5 HOH A 4 404 77 HOH HOH . 
P 5 HOH A 5 405 5 HOH HOH . 
P 5 HOH A 6 406 3 HOH HOH . 
P 5 HOH A 7 407 79 HOH HOH . 
P 5 HOH A 8 408 60 HOH HOH . 
P 5 HOH A 9 409 68 HOH HOH . 
P 5 HOH A 10 410 59 HOH HOH . 
P 5 HOH A 11 411 83 HOH HOH . 
P 5 HOH A 12 412 53 HOH HOH . 
P 5 HOH A 13 413 43 HOH HOH . 
P 5 HOH A 14 414 97 HOH HOH . 
P 5 HOH A 15 415 25 HOH HOH . 
P 5 HOH A 16 416 27 HOH HOH . 
P 5 HOH A 17 417 22 HOH HOH . 
P 5 HOH A 18 418 44 HOH HOH . 
P 5 HOH A 19 419 42 HOH HOH . 
P 5 HOH A 20 420 51 HOH HOH . 
P 5 HOH A 21 421 4 HOH HOH . 
P 5 HOH A 22 422 57 HOH HOH . 
P 5 HOH A 23 423 67 HOH HOH . 
P 5 HOH A 24 424 2 HOH HOH . 
P 5 HOH A 25 425 41 HOH HOH . 
Q 5 HOH B 1 401 13 HOH HOH . 
Q 5 HOH B 2 402 46 HOH HOH . 
Q 5 HOH B 3 403 19 HOH HOH . 
Q 5 HOH B 4 404 71 HOH HOH . 
Q 5 HOH B 5 405 33 HOH HOH . 
Q 5 HOH B 6 406 70 HOH HOH . 
Q 5 HOH B 7 407 12 HOH HOH . 
Q 5 HOH B 8 408 20 HOH HOH . 
Q 5 HOH B 9 409 7 HOH HOH . 
Q 5 HOH B 10 410 29 HOH HOH . 
Q 5 HOH B 11 411 91 HOH HOH . 
Q 5 HOH B 12 412 81 HOH HOH . 
Q 5 HOH B 13 413 14 HOH HOH . 
Q 5 HOH B 14 414 26 HOH HOH . 
Q 5 HOH B 15 415 9 HOH HOH . 
Q 5 HOH B 16 416 16 HOH HOH . 
Q 5 HOH B 17 417 95 HOH HOH . 
Q 5 HOH B 18 418 11 HOH HOH . 
Q 5 HOH B 19 419 15 HOH HOH . 
Q 5 HOH B 20 420 69 HOH HOH . 
Q 5 HOH B 21 421 47 HOH HOH . 
R 5 HOH C 1 401 72 HOH HOH . 
R 5 HOH C 2 402 74 HOH HOH . 
R 5 HOH C 3 403 36 HOH HOH . 
R 5 HOH C 4 404 28 HOH HOH . 
R 5 HOH C 5 405 73 HOH HOH . 
R 5 HOH C 6 406 49 HOH HOH . 
R 5 HOH C 7 407 40 HOH HOH . 
R 5 HOH C 8 408 56 HOH HOH . 
R 5 HOH C 9 409 17 HOH HOH . 
R 5 HOH C 10 410 30 HOH HOH . 
R 5 HOH C 11 411 96 HOH HOH . 
R 5 HOH C 12 412 37 HOH HOH . 
R 5 HOH C 13 413 52 HOH HOH . 
R 5 HOH C 14 414 80 HOH HOH . 
R 5 HOH C 15 415 50 HOH HOH . 
R 5 HOH C 16 416 21 HOH HOH . 
R 5 HOH C 17 417 39 HOH HOH . 
R 5 HOH C 18 418 31 HOH HOH . 
R 5 HOH C 19 419 85 HOH HOH . 
R 5 HOH C 20 420 90 HOH HOH . 
R 5 HOH C 21 421 48 HOH HOH . 
R 5 HOH C 22 422 38 HOH HOH . 
R 5 HOH C 23 423 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . D 2 -8.533 -36.02 34.471 1 13.77 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . D 2 -9.142 -36.876 35.582 1 14.03 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . D 2 -10.392 -37.593 35.076 1 14.43 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . D 2 -9.943 -38.592 34.01 1 15 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . D 2 -9.274 -37.84 32.884 1 15.43 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . D 2 -8.558 -36.713 33.101 1 14.69 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . D 2 -7.629 -36.309 32.06 1 15.07 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . D 2 -7.488 -35.03 31.645 1 14.92 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . D 2 -6.54 -34.647 30.616 1 15.56 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . D 2 -5.949 -33.436 30.723 1 16.03 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . D 2 -5.052 -32.954 29.838 1 16.28 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . D 2 -4.708 -31.657 29.986 1 16.97 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . D 2 -3.762 -30.999 29.108 1 17.17 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . D 2 -3.558 -29.672 29.246 1 14.76 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . D 2 -2.635 -28.962 28.385 1 12.05 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . D 2 -9.308 -34.7 34.419 1 13.66 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . D 2 -7.077 -35.761 34.858 1 13.69 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . D 2 -9.49 -38.335 31.474 1 16.46 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . D 2 -6.223 -35.581 29.472 1 15.47 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . D 2 -3.028 -31.776 28.042 1 17.63 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#