data_5ITE # _model_server_result.job_id l37UFglNQ7sqGa2CKItGjw _model_server_result.datetime_utc '2024-11-27 16:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ite # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":304}' # _entry.id 5ITE # _exptl.entry_id 5ITE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.8 _cell.angle_gamma 90 _cell.entry_id 5ITE _cell.length_a 106.442 _cell.length_b 61.565 _cell.length_c 119.689 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 224 A LYS 224 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B NZ LYS 224 B LYS 224 1_555 G C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C NZ LYS 224 C LYS 224 1_555 L C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 224 n n C1 O20 OLB sing 225 n n C2 C1 OLB sing 226 n n C3 C2 OLB sing 227 n n C4 C3 OLB sing 228 n n C5 C4 OLB sing 229 n n C5 C6 OLB sing 230 n n O20 C21 OLB sing 231 n n C21 C22 OLB sing 232 n n C22 C24 OLB sing 233 n n O23 C22 OLB sing 234 n n C24 O25 OLB sing 235 n n C6 C7 OLB sing 236 n n C7 C8 OLB sing 237 n n C8 C9 OLB sing 238 n n C9 C10 OLB doub 239 z n C10 C11 OLB sing 240 n n C2 H2 OLB sing 241 n n C2 H2A OLB sing 242 n n C3 H3 OLB sing 243 n n C3 H3A OLB sing 244 n n C4 H4 OLB sing 245 n n C4 H4A OLB sing 246 n n C5 H5 OLB sing 247 n n C5 H5A OLB sing 248 n n C21 H21 OLB sing 249 n n C21 H21A OLB sing 250 n n C22 H22 OLB sing 251 n n O23 HO23 OLB sing 252 n n C24 H24 OLB sing 253 n n C24 H24A OLB sing 254 n n O25 HO25 OLB sing 255 n n C6 H16 OLB sing 256 n n C6 H17 OLB sing 257 n n C7 H18 OLB sing 258 n n C7 H19 OLB sing 259 n n C8 H20 OLB sing 260 n n C8 H211 OLB sing 261 n n C9 H221 OLB sing 262 n n C10 H23 OLB sing 263 n n C11 H241 OLB sing 264 n n C11 H25 OLB sing 265 n n C11 C12 OLB sing 266 n n C12 H26 OLB sing 267 n n C12 C13 OLB sing 268 n n C12 H27 OLB sing 269 n n C13 C14 OLB sing 270 n n C13 H28 OLB sing 271 n n C13 H29 OLB sing 272 n n C14 H30 OLB sing 273 n n C14 H31 OLB sing 274 n n C14 C15 OLB sing 275 n n C15 C16 OLB sing 276 n n C15 H32 OLB sing 277 n n C15 H33 OLB sing 278 n n C16 H34 OLB sing 279 n n C16 H35 OLB sing 280 n n C16 C17 OLB sing 281 n n C17 C18 OLB sing 282 n n C17 H36 OLB sing 283 n n C17 H37 OLB sing 284 n n C18 H38 OLB sing 285 n n C18 H39 OLB sing 286 n n C18 H40 OLB sing 287 n n # _atom_sites.entry_id 5ITE _atom_sites.fract_transf_matrix[1][1] 0.009395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 301 301 RET RET . E 3 OLB A 1 302 6 OLB OLB . F 4 OLC A 1 303 8 OLC OLC . G 2 RET B 1 301 303 RET RET . H 4 OLC B 1 302 3 OLC OLC . I 4 OLC B 1 303 4 OLC OLC . J 4 OLC B 1 304 7 OLC OLC . K 3 OLB B 1 305 10 OLB OLB . L 2 RET C 1 301 302 RET RET . M 4 OLC C 1 302 1 OLC OLC . N 4 OLC C 1 303 2 OLC OLC . O 3 OLB C 1 304 9 OLB OLB . P 5 HOH A 1 401 23 HOH HOH . P 5 HOH A 2 402 1 HOH HOH . P 5 HOH A 3 403 55 HOH HOH . P 5 HOH A 4 404 77 HOH HOH . P 5 HOH A 5 405 5 HOH HOH . P 5 HOH A 6 406 3 HOH HOH . P 5 HOH A 7 407 79 HOH HOH . P 5 HOH A 8 408 60 HOH HOH . P 5 HOH A 9 409 68 HOH HOH . P 5 HOH A 10 410 59 HOH HOH . P 5 HOH A 11 411 83 HOH HOH . P 5 HOH A 12 412 53 HOH HOH . P 5 HOH A 13 413 43 HOH HOH . P 5 HOH A 14 414 97 HOH HOH . P 5 HOH A 15 415 25 HOH HOH . P 5 HOH A 16 416 27 HOH HOH . P 5 HOH A 17 417 22 HOH HOH . P 5 HOH A 18 418 44 HOH HOH . P 5 HOH A 19 419 42 HOH HOH . P 5 HOH A 20 420 51 HOH HOH . P 5 HOH A 21 421 4 HOH HOH . P 5 HOH A 22 422 57 HOH HOH . P 5 HOH A 23 423 67 HOH HOH . P 5 HOH A 24 424 2 HOH HOH . P 5 HOH A 25 425 41 HOH HOH . Q 5 HOH B 1 401 13 HOH HOH . Q 5 HOH B 2 402 46 HOH HOH . Q 5 HOH B 3 403 19 HOH HOH . Q 5 HOH B 4 404 71 HOH HOH . Q 5 HOH B 5 405 33 HOH HOH . Q 5 HOH B 6 406 70 HOH HOH . Q 5 HOH B 7 407 12 HOH HOH . Q 5 HOH B 8 408 20 HOH HOH . Q 5 HOH B 9 409 7 HOH HOH . Q 5 HOH B 10 410 29 HOH HOH . Q 5 HOH B 11 411 91 HOH HOH . Q 5 HOH B 12 412 81 HOH HOH . Q 5 HOH B 13 413 14 HOH HOH . Q 5 HOH B 14 414 26 HOH HOH . Q 5 HOH B 15 415 9 HOH HOH . Q 5 HOH B 16 416 16 HOH HOH . Q 5 HOH B 17 417 95 HOH HOH . Q 5 HOH B 18 418 11 HOH HOH . Q 5 HOH B 19 419 15 HOH HOH . Q 5 HOH B 20 420 69 HOH HOH . Q 5 HOH B 21 421 47 HOH HOH . R 5 HOH C 1 401 72 HOH HOH . R 5 HOH C 2 402 74 HOH HOH . R 5 HOH C 3 403 36 HOH HOH . R 5 HOH C 4 404 28 HOH HOH . R 5 HOH C 5 405 73 HOH HOH . R 5 HOH C 6 406 49 HOH HOH . R 5 HOH C 7 407 40 HOH HOH . R 5 HOH C 8 408 56 HOH HOH . R 5 HOH C 9 409 17 HOH HOH . R 5 HOH C 10 410 30 HOH HOH . R 5 HOH C 11 411 96 HOH HOH . R 5 HOH C 12 412 37 HOH HOH . R 5 HOH C 13 413 52 HOH HOH . R 5 HOH C 14 414 80 HOH HOH . R 5 HOH C 15 415 50 HOH HOH . R 5 HOH C 16 416 21 HOH HOH . R 5 HOH C 17 417 39 HOH HOH . R 5 HOH C 18 418 31 HOH HOH . R 5 HOH C 19 419 85 HOH HOH . R 5 HOH C 20 420 90 HOH HOH . R 5 HOH C 21 421 48 HOH HOH . R 5 HOH C 22 422 38 HOH HOH . R 5 HOH C 23 423 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . O 3 -20.876 -28.751 17.854 1 51.72 ? C1 OLB 304 C 1 HETATM 2 C C2 OLB . . . O 3 -21.289 -28.129 19.2 1 50.43 ? C2 OLB 304 C 1 HETATM 3 C C3 OLB . . . O 3 -20.21 -28.425 20.259 1 49.15 ? C3 OLB 304 C 1 HETATM 4 C C4 OLB . . . O 3 -20.753 -28.068 21.656 1 48.38 ? C4 OLB 304 C 1 HETATM 5 C C5 OLB . . . O 3 -19.647 -28.269 22.707 1 47.27 ? C5 OLB 304 C 1 HETATM 6 O O19 OLB . . . O 3 -20.698 -29.964 17.757 1 51.16 ? O19 OLB 304 C 1 HETATM 7 O O20 OLB . . . O 3 -20.753 -27.91 16.703 1 53.61 ? O20 OLB 304 C 1 HETATM 8 C C21 OLB . . . O 3 -20.604 -28.545 15.43 1 54.38 ? C21 OLB 304 C 1 HETATM 9 C C22 OLB . . . O 3 -20.69 -27.484 14.317 1 54.94 ? C22 OLB 304 C 1 HETATM 10 O O23 OLB . . . O 3 -19.572 -26.596 14.405 1 55.4 ? O23 OLB 304 C 1 HETATM 11 C C24 OLB . . . O 3 -20.685 -28.18 12.943 1 55.28 ? C24 OLB 304 C 1 HETATM 12 O O25 OLB . . . O 3 -20.802 -27.235 11.877 1 55.68 ? O25 OLB 304 C 1 HETATM 13 C C6 OLB . . . O 3 -20.263 -28.212 24.117 1 46.76 ? C6 OLB 304 C 1 HETATM 14 C C7 OLB . . . O 3 -19.14 -28.232 25.171 1 47.22 ? C7 OLB 304 C 1 HETATM 15 C C8 OLB . . . O 3 -19.756 -28.35 26.578 1 46.47 ? C8 OLB 304 C 1 HETATM 16 C C9 OLB . . . O 3 -20.194 -29.807 26.825 1 46.2 ? C9 OLB 304 C 1 HETATM 17 C C10 OLB . . . O 3 -20.014 -30.364 28.031 1 46.05 ? C10 OLB 304 C 1 HETATM 18 C C11 OLB . . . O 3 -19.375 -29.548 29.17 1 45.4 ? C11 OLB 304 C 1 HETATM 19 C C12 OLB . . . O 3 -20.379 -29.409 30.331 1 44.97 ? C12 OLB 304 C 1 HETATM 20 C C13 OLB . . . O 3 -20.56 -30.775 31.02 1 44.52 ? C13 OLB 304 C 1 HETATM 21 C C14 OLB . . . O 3 -21.397 -30.597 32.302 1 43.41 ? C14 OLB 304 C 1 HETATM 22 C C15 OLB . . . O 3 -21.444 -31.929 33.075 1 41.87 ? C15 OLB 304 C 1 HETATM 23 C C16 OLB . . . O 3 -22.27 -31.746 34.363 1 41.05 ? C16 OLB 304 C 1 HETATM 24 C C17 OLB . . . O 3 -21.599 -30.686 35.258 1 40.38 ? C17 OLB 304 C 1 HETATM 25 C C18 OLB . . . O 3 -22.485 -30.418 36.49 1 39.6 ? C18 OLB 304 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #