data_5ITI # _model_server_result.job_id '_qih9SmuVtJxwIXqFuVYvw' _model_server_result.datetime_utc '2024-10-19 20:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5ITI # _exptl.entry_id 5ITI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ITI _cell.length_a 38.008 _cell.length_b 153.823 _cell.length_c 82.929 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 37 A ASP 34 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc2 A OD2 ASP 37 A ASP 34 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 A OD1 ASP 37 A ASP 34 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 A O GLY 38 A GLY 35 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 A OD2 ASP 122 A ASP 119 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 A OD1 ASP 196 A ASP 193 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc7 A OD2 ASP 196 A ASP 193 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 A OE1 GLU 201 A GLU 198 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc9 A O HIS 230 A HIS 227 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 A OD2 ASP 234 A ASP 231 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc11 B CA CA . A CA 301 1_555 F O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc12 B CA CA . A CA 301 1_555 F O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc13 B CA CA . A CA 301 1_555 F O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc14 C CA CA . A CA 302 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc15 C CA CA . A CA 302 1_555 F O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc16 C CA CA . A CA 302 1_555 F O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc17 C CA CA . A CA 302 1_555 F O HOH . A HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc18 D CA CA . A CA 303 1_555 F O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc19 D CA CA . A CA 303 1_555 F O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc20 E CA CA . A CA 304 1_555 F O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc21 E CA CA . A CA 304 1_555 F O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc22 E CA CA . A CA 304 1_555 F O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc23 E CA CA . A CA 304 1_555 F O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ITI _atom_sites.fract_transf_matrix[1][1] 0.02631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 5 CA CA . C 2 CA A 1 302 6 CA CA . D 2 CA A 1 303 7 CA CA . E 2 CA A 1 304 8 CA CA . F 3 HOH A 1 401 64 HOH HOH . F 3 HOH A 2 402 38 HOH HOH . F 3 HOH A 3 403 14 HOH HOH . F 3 HOH A 4 404 67 HOH HOH . F 3 HOH A 5 405 39 HOH HOH . F 3 HOH A 6 406 43 HOH HOH . F 3 HOH A 7 407 8 HOH HOH . F 3 HOH A 8 408 29 HOH HOH . F 3 HOH A 9 409 70 HOH HOH . F 3 HOH A 10 410 26 HOH HOH . F 3 HOH A 11 411 55 HOH HOH . F 3 HOH A 12 412 33 HOH HOH . F 3 HOH A 13 413 73 HOH HOH . F 3 HOH A 14 414 19 HOH HOH . F 3 HOH A 15 415 40 HOH HOH . F 3 HOH A 16 416 10 HOH HOH . F 3 HOH A 17 417 76 HOH HOH . F 3 HOH A 18 418 88 HOH HOH . F 3 HOH A 19 419 16 HOH HOH . F 3 HOH A 20 420 5 HOH HOH . F 3 HOH A 21 421 25 HOH HOH . F 3 HOH A 22 422 21 HOH HOH . F 3 HOH A 23 423 47 HOH HOH . F 3 HOH A 24 424 27 HOH HOH . F 3 HOH A 25 425 79 HOH HOH . F 3 HOH A 26 426 1 HOH HOH . F 3 HOH A 27 427 85 HOH HOH . F 3 HOH A 28 428 12 HOH HOH . F 3 HOH A 29 429 7 HOH HOH . F 3 HOH A 30 430 4 HOH HOH . F 3 HOH A 31 431 3 HOH HOH . F 3 HOH A 32 432 11 HOH HOH . F 3 HOH A 33 433 52 HOH HOH . F 3 HOH A 34 434 20 HOH HOH . F 3 HOH A 35 435 58 HOH HOH . F 3 HOH A 36 436 62 HOH HOH . F 3 HOH A 37 437 87 HOH HOH . F 3 HOH A 38 438 22 HOH HOH . F 3 HOH A 39 439 31 HOH HOH . F 3 HOH A 40 440 46 HOH HOH . F 3 HOH A 41 441 23 HOH HOH . F 3 HOH A 42 442 32 HOH HOH . F 3 HOH A 43 443 83 HOH HOH . F 3 HOH A 44 444 30 HOH HOH . F 3 HOH A 45 445 36 HOH HOH . F 3 HOH A 46 446 50 HOH HOH . F 3 HOH A 47 447 13 HOH HOH . F 3 HOH A 48 448 78 HOH HOH . F 3 HOH A 49 449 60 HOH HOH . F 3 HOH A 50 450 24 HOH HOH . F 3 HOH A 51 451 2 HOH HOH . F 3 HOH A 52 452 44 HOH HOH . F 3 HOH A 53 453 56 HOH HOH . F 3 HOH A 54 454 81 HOH HOH . F 3 HOH A 55 455 69 HOH HOH . F 3 HOH A 56 456 28 HOH HOH . F 3 HOH A 57 457 34 HOH HOH . F 3 HOH A 58 458 41 HOH HOH . F 3 HOH A 59 459 17 HOH HOH . F 3 HOH A 60 460 45 HOH HOH . F 3 HOH A 61 461 9 HOH HOH . F 3 HOH A 62 462 15 HOH HOH . F 3 HOH A 63 463 18 HOH HOH . F 3 HOH A 64 464 53 HOH HOH . F 3 HOH A 65 465 51 HOH HOH . F 3 HOH A 66 466 74 HOH HOH . F 3 HOH A 67 467 48 HOH HOH . F 3 HOH A 68 468 37 HOH HOH . F 3 HOH A 69 469 6 HOH HOH . F 3 HOH A 70 470 42 HOH HOH . F 3 HOH A 71 471 35 HOH HOH . F 3 HOH A 72 472 61 HOH HOH . F 3 HOH A 73 473 49 HOH HOH . F 3 HOH A 74 474 84 HOH HOH . F 3 HOH A 75 475 80 HOH HOH . F 3 HOH A 76 476 77 HOH HOH . F 3 HOH A 77 477 63 HOH HOH . F 3 HOH A 78 478 57 HOH HOH . F 3 HOH A 79 479 65 HOH HOH . F 3 HOH A 80 480 59 HOH HOH . F 3 HOH A 81 481 71 HOH HOH . F 3 HOH A 82 482 66 HOH HOH . F 3 HOH A 83 483 72 HOH HOH . F 3 HOH A 84 484 54 HOH HOH . F 3 HOH A 85 485 82 HOH HOH . F 3 HOH A 86 486 68 HOH HOH . F 3 HOH A 87 487 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.619 _atom_site.Cartn_y 16.015 _atom_site.Cartn_z -0.164 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #