data_5ITO # _model_server_result.job_id NXT72J-pxbEeQSHlF2Lxxw _model_server_result.datetime_utc '2024-11-08 09:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ito # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 5ITO # _exptl.entry_id 5ITO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ITO _cell.length_a 113.59 _cell.length_b 113.59 _cell.length_c 37.89 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITO _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N ? 3 J N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 154 n n C1 C2 EDO sing 155 n n C1 H11 EDO sing 156 n n C1 H12 EDO sing 157 n n O1 HO1 EDO sing 158 n n C2 O2 EDO sing 159 n n C2 H21 EDO sing 160 n n C2 H22 EDO sing 161 n n O2 HO2 EDO sing 162 n n # _atom_sites.entry_id 5ITO _atom_sites.fract_transf_matrix[1][1] 0.008804 _atom_sites.fract_transf_matrix[1][2] 0.005083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 301 2 PEG PEG . D 3 EDO A 1 302 3 EDO EDO . E 4 1PE A 1 303 1 1PE P15 . F 5 6DB A 1 304 2 6DB DRG . G 6 TOE A 1 305 1 TOE 15P . H 6 TOE A 1 306 3 TOE 15P . I 3 EDO B 1 301 1 EDO EDO . J 3 EDO B 1 302 2 EDO EDO . K 5 6DB B 1 303 3 6DB DRG . L 7 HOH A 1 401 59 HOH HOH . L 7 HOH A 2 402 5 HOH HOH . L 7 HOH A 3 403 37 HOH HOH . L 7 HOH A 4 404 15 HOH HOH . L 7 HOH A 5 405 25 HOH HOH . L 7 HOH A 6 406 35 HOH HOH . L 7 HOH A 7 407 40 HOH HOH . L 7 HOH A 8 408 78 HOH HOH . L 7 HOH A 9 409 82 HOH HOH . L 7 HOH A 10 410 85 HOH HOH . L 7 HOH A 11 411 55 HOH HOH . L 7 HOH A 12 412 69 HOH HOH . L 7 HOH A 13 413 58 HOH HOH . L 7 HOH A 14 414 36 HOH HOH . L 7 HOH A 15 415 2 HOH HOH . L 7 HOH A 16 416 70 HOH HOH . L 7 HOH A 17 417 71 HOH HOH . L 7 HOH A 18 418 38 HOH HOH . L 7 HOH A 19 419 45 HOH HOH . L 7 HOH A 20 420 34 HOH HOH . L 7 HOH A 21 421 3 HOH HOH . L 7 HOH A 22 422 16 HOH HOH . L 7 HOH A 23 423 54 HOH HOH . L 7 HOH A 24 424 31 HOH HOH . L 7 HOH A 25 425 65 HOH HOH . L 7 HOH A 26 426 23 HOH HOH . L 7 HOH A 27 427 101 HOH HOH . L 7 HOH A 28 428 47 HOH HOH . L 7 HOH A 29 429 64 HOH HOH . L 7 HOH A 30 430 39 HOH HOH . L 7 HOH A 31 431 46 HOH HOH . L 7 HOH A 32 432 79 HOH HOH . L 7 HOH A 33 433 80 HOH HOH . L 7 HOH A 34 434 49 HOH HOH . L 7 HOH A 35 435 28 HOH HOH . L 7 HOH A 36 436 44 HOH HOH . L 7 HOH A 37 437 63 HOH HOH . L 7 HOH A 38 438 56 HOH HOH . L 7 HOH A 39 439 60 HOH HOH . L 7 HOH A 40 440 105 HOH HOH . L 7 HOH A 41 441 30 HOH HOH . L 7 HOH A 42 442 86 HOH HOH . L 7 HOH A 43 443 32 HOH HOH . L 7 HOH A 44 444 72 HOH HOH . L 7 HOH A 45 445 102 HOH HOH . L 7 HOH A 46 446 100 HOH HOH . L 7 HOH A 47 447 57 HOH HOH . L 7 HOH A 48 448 41 HOH HOH . L 7 HOH A 49 449 107 HOH HOH . L 7 HOH A 50 450 22 HOH HOH . L 7 HOH A 51 451 29 HOH HOH . L 7 HOH A 52 452 53 HOH HOH . L 7 HOH A 53 453 66 HOH HOH . L 7 HOH A 54 454 27 HOH HOH . L 7 HOH A 55 455 26 HOH HOH . L 7 HOH A 56 456 68 HOH HOH . L 7 HOH A 57 457 62 HOH HOH . L 7 HOH A 58 458 104 HOH HOH . L 7 HOH A 59 459 12 HOH HOH . L 7 HOH A 60 460 20 HOH HOH . L 7 HOH A 61 461 90 HOH HOH . L 7 HOH A 62 462 103 HOH HOH . L 7 HOH A 63 463 51 HOH HOH . L 7 HOH A 64 464 9 HOH HOH . L 7 HOH A 65 465 94 HOH HOH . L 7 HOH A 66 466 96 HOH HOH . L 7 HOH A 67 467 13 HOH HOH . L 7 HOH A 68 468 43 HOH HOH . L 7 HOH A 69 469 33 HOH HOH . L 7 HOH A 70 470 52 HOH HOH . M 7 HOH B 1 401 19 HOH HOH . M 7 HOH B 2 402 21 HOH HOH . M 7 HOH B 3 403 17 HOH HOH . M 7 HOH B 4 404 83 HOH HOH . M 7 HOH B 5 405 61 HOH HOH . M 7 HOH B 6 406 75 HOH HOH . M 7 HOH B 7 407 95 HOH HOH . M 7 HOH B 8 408 77 HOH HOH . M 7 HOH B 9 409 7 HOH HOH . M 7 HOH B 10 410 76 HOH HOH . M 7 HOH B 11 411 18 HOH HOH . M 7 HOH B 12 412 14 HOH HOH . M 7 HOH B 13 413 73 HOH HOH . M 7 HOH B 14 414 106 HOH HOH . M 7 HOH B 15 415 81 HOH HOH . M 7 HOH B 16 416 97 HOH HOH . M 7 HOH B 17 417 88 HOH HOH . M 7 HOH B 18 418 92 HOH HOH . M 7 HOH B 19 419 89 HOH HOH . M 7 HOH B 20 420 110 HOH HOH . M 7 HOH B 21 421 98 HOH HOH . M 7 HOH B 22 422 108 HOH HOH . M 7 HOH B 23 423 99 HOH HOH . M 7 HOH B 24 424 93 HOH HOH . M 7 HOH B 25 425 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 3 38.195 -17.493 -9.399 1 61.08 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . J 3 37.538 -18.633 -8.847 1 64.35 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . J 3 37.221 -16.32 -9.691 1 56.19 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . J 3 36.82 -15.613 -8.509 1 53 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #