data_5ITO # _model_server_result.job_id U1VGJt9oBOkpmWLsjFC7XA _model_server_result.datetime_utc '2024-11-08 10:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ito # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5ITO # _exptl.entry_id 5ITO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ITO _cell.length_a 113.59 _cell.length_b 113.59 _cell.length_c 37.89 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITO _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5ITO _atom_sites.fract_transf_matrix[1][1] 0.008804 _atom_sites.fract_transf_matrix[1][2] 0.005083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 301 2 PEG PEG . D 3 EDO A 1 302 3 EDO EDO . E 4 1PE A 1 303 1 1PE P15 . F 5 6DB A 1 304 2 6DB DRG . G 6 TOE A 1 305 1 TOE 15P . H 6 TOE A 1 306 3 TOE 15P . I 3 EDO B 1 301 1 EDO EDO . J 3 EDO B 1 302 2 EDO EDO . K 5 6DB B 1 303 3 6DB DRG . L 7 HOH A 1 401 59 HOH HOH . L 7 HOH A 2 402 5 HOH HOH . L 7 HOH A 3 403 37 HOH HOH . L 7 HOH A 4 404 15 HOH HOH . L 7 HOH A 5 405 25 HOH HOH . L 7 HOH A 6 406 35 HOH HOH . L 7 HOH A 7 407 40 HOH HOH . L 7 HOH A 8 408 78 HOH HOH . L 7 HOH A 9 409 82 HOH HOH . L 7 HOH A 10 410 85 HOH HOH . L 7 HOH A 11 411 55 HOH HOH . L 7 HOH A 12 412 69 HOH HOH . L 7 HOH A 13 413 58 HOH HOH . L 7 HOH A 14 414 36 HOH HOH . L 7 HOH A 15 415 2 HOH HOH . L 7 HOH A 16 416 70 HOH HOH . L 7 HOH A 17 417 71 HOH HOH . L 7 HOH A 18 418 38 HOH HOH . L 7 HOH A 19 419 45 HOH HOH . L 7 HOH A 20 420 34 HOH HOH . L 7 HOH A 21 421 3 HOH HOH . L 7 HOH A 22 422 16 HOH HOH . L 7 HOH A 23 423 54 HOH HOH . L 7 HOH A 24 424 31 HOH HOH . L 7 HOH A 25 425 65 HOH HOH . L 7 HOH A 26 426 23 HOH HOH . L 7 HOH A 27 427 101 HOH HOH . L 7 HOH A 28 428 47 HOH HOH . L 7 HOH A 29 429 64 HOH HOH . L 7 HOH A 30 430 39 HOH HOH . L 7 HOH A 31 431 46 HOH HOH . L 7 HOH A 32 432 79 HOH HOH . L 7 HOH A 33 433 80 HOH HOH . L 7 HOH A 34 434 49 HOH HOH . L 7 HOH A 35 435 28 HOH HOH . L 7 HOH A 36 436 44 HOH HOH . L 7 HOH A 37 437 63 HOH HOH . L 7 HOH A 38 438 56 HOH HOH . L 7 HOH A 39 439 60 HOH HOH . L 7 HOH A 40 440 105 HOH HOH . L 7 HOH A 41 441 30 HOH HOH . L 7 HOH A 42 442 86 HOH HOH . L 7 HOH A 43 443 32 HOH HOH . L 7 HOH A 44 444 72 HOH HOH . L 7 HOH A 45 445 102 HOH HOH . L 7 HOH A 46 446 100 HOH HOH . L 7 HOH A 47 447 57 HOH HOH . L 7 HOH A 48 448 41 HOH HOH . L 7 HOH A 49 449 107 HOH HOH . L 7 HOH A 50 450 22 HOH HOH . L 7 HOH A 51 451 29 HOH HOH . L 7 HOH A 52 452 53 HOH HOH . L 7 HOH A 53 453 66 HOH HOH . L 7 HOH A 54 454 27 HOH HOH . L 7 HOH A 55 455 26 HOH HOH . L 7 HOH A 56 456 68 HOH HOH . L 7 HOH A 57 457 62 HOH HOH . L 7 HOH A 58 458 104 HOH HOH . L 7 HOH A 59 459 12 HOH HOH . L 7 HOH A 60 460 20 HOH HOH . L 7 HOH A 61 461 90 HOH HOH . L 7 HOH A 62 462 103 HOH HOH . L 7 HOH A 63 463 51 HOH HOH . L 7 HOH A 64 464 9 HOH HOH . L 7 HOH A 65 465 94 HOH HOH . L 7 HOH A 66 466 96 HOH HOH . L 7 HOH A 67 467 13 HOH HOH . L 7 HOH A 68 468 43 HOH HOH . L 7 HOH A 69 469 33 HOH HOH . L 7 HOH A 70 470 52 HOH HOH . M 7 HOH B 1 401 19 HOH HOH . M 7 HOH B 2 402 21 HOH HOH . M 7 HOH B 3 403 17 HOH HOH . M 7 HOH B 4 404 83 HOH HOH . M 7 HOH B 5 405 61 HOH HOH . M 7 HOH B 6 406 75 HOH HOH . M 7 HOH B 7 407 95 HOH HOH . M 7 HOH B 8 408 77 HOH HOH . M 7 HOH B 9 409 7 HOH HOH . M 7 HOH B 10 410 76 HOH HOH . M 7 HOH B 11 411 18 HOH HOH . M 7 HOH B 12 412 14 HOH HOH . M 7 HOH B 13 413 73 HOH HOH . M 7 HOH B 14 414 106 HOH HOH . M 7 HOH B 15 415 81 HOH HOH . M 7 HOH B 16 416 97 HOH HOH . M 7 HOH B 17 417 88 HOH HOH . M 7 HOH B 18 418 92 HOH HOH . M 7 HOH B 19 419 89 HOH HOH . M 7 HOH B 20 420 110 HOH HOH . M 7 HOH B 21 421 98 HOH HOH . M 7 HOH B 22 422 108 HOH HOH . M 7 HOH B 23 423 99 HOH HOH . M 7 HOH B 24 424 93 HOH HOH . M 7 HOH B 25 425 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 4 8.333 -9.757 -10.877 1 66.41 ? OH2 1PE 303 A 1 HETATM 2 C C12 1PE . . . E 4 8.147 -10.435 -9.641 1 66.17 ? C12 1PE 303 A 1 HETATM 3 C C22 1PE . . . E 4 7.104 -9.778 -8.781 1 66.61 ? C22 1PE 303 A 1 HETATM 4 O OH3 1PE . . . E 4 7.434 -8.374 -8.574 1 68.42 ? OH3 1PE 303 A 1 HETATM 5 C C13 1PE . . . E 4 9.498 -7.561 -7.538 1 64.94 ? C13 1PE 303 A 1 HETATM 6 C C23 1PE . . . E 4 8.015 -8.013 -7.319 1 66.37 ? C23 1PE 303 A 1 HETATM 7 O OH4 1PE . . . E 4 9.754 -6.384 -6.734 1 62.78 ? OH4 1PE 303 A 1 HETATM 8 C C14 1PE . . . E 4 8.862 -4.255 -7.338 1 61.5 ? C14 1PE 303 A 1 HETATM 9 C C24 1PE . . . E 4 10.041 -5.209 -7.505 1 60.67 ? C24 1PE 303 A 1 HETATM 10 O OH5 1PE . . . E 4 8.855 -3.286 -8.372 1 61.86 ? OH5 1PE 303 A 1 HETATM 11 C C15 1PE . . . E 4 7.35 -1.406 -7.978 1 64.8 ? C15 1PE 303 A 1 HETATM 12 C C25 1PE . . . E 4 7.565 -2.769 -8.651 1 63.17 ? C25 1PE 303 A 1 HETATM 13 O OH6 1PE . . . E 4 6.324 -1.571 -6.982 1 66.65 ? OH6 1PE 303 A 1 HETATM 14 C C16 1PE . . . E 4 5.496 -0.273 -5.104 1 68.17 ? C16 1PE 303 A 1 HETATM 15 C C26 1PE . . . E 4 5.579 -0.401 -6.645 1 66.42 ? C26 1PE 303 A 1 HETATM 16 O OH7 1PE . . . E 4 5.18 -1.51 -4.492 1 68.48 ? OH7 1PE 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #