data_5ITO # _model_server_result.job_id XxEvTUURsAbfwD2goaY78w _model_server_result.datetime_utc '2024-11-08 09:56:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ito # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 5ITO # _exptl.entry_id 5ITO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.264 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description octopine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ITO _cell.length_a 113.59 _cell.length_b 113.59 _cell.length_c 37.89 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITO _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,L 1 1 B,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 K N N # _chem_comp.formula 'C9 H18 N4 O4' _chem_comp.formula_weight 246.264 _chem_comp.id 6DB _chem_comp.mon_nstd_flag . _chem_comp.name octopine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 6DB doub 38 n n CB CA 6DB sing 39 n n C OXT 6DB sing 40 n n C CA 6DB sing 41 n n CA N 6DB sing 42 n n N CAI 6DB sing 43 n n OAB CAE 6DB doub 44 n n CAI CAE 6DB sing 45 n n CAI CAK 6DB sing 46 n n CAE OAF 6DB sing 47 n n CAK CAL 6DB sing 48 n n CAL CAM 6DB sing 49 n n CAM NAN 6DB sing 50 n n NAN CAP 6DB sing 51 n n CAP NAO 6DB doub 52 n n CAP NAQ 6DB sing 53 n n CA H1 6DB sing 54 n n CB H2 6DB sing 55 n n CB H3 6DB sing 56 n n CB H4 6DB sing 57 n n N H5 6DB sing 58 n n CAI H7 6DB sing 59 n n OAF H8 6DB sing 60 n n CAK H9 6DB sing 61 n n CAK H10 6DB sing 62 n n CAL H11 6DB sing 63 n n CAL H12 6DB sing 64 n n CAM H13 6DB sing 65 n n CAM H14 6DB sing 66 n n NAN H15 6DB sing 67 n n NAO H16 6DB sing 68 n n NAQ H18 6DB sing 69 n n NAQ H19 6DB sing 70 n n OXT H20 6DB sing 71 n n # _atom_sites.entry_id 5ITO _atom_sites.fract_transf_matrix[1][1] 0.008804 _atom_sites.fract_transf_matrix[1][2] 0.005083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 301 2 PEG PEG . D 3 EDO A 1 302 3 EDO EDO . E 4 1PE A 1 303 1 1PE P15 . F 5 6DB A 1 304 2 6DB DRG . G 6 TOE A 1 305 1 TOE 15P . H 6 TOE A 1 306 3 TOE 15P . I 3 EDO B 1 301 1 EDO EDO . J 3 EDO B 1 302 2 EDO EDO . K 5 6DB B 1 303 3 6DB DRG . L 7 HOH A 1 401 59 HOH HOH . L 7 HOH A 2 402 5 HOH HOH . L 7 HOH A 3 403 37 HOH HOH . L 7 HOH A 4 404 15 HOH HOH . L 7 HOH A 5 405 25 HOH HOH . L 7 HOH A 6 406 35 HOH HOH . L 7 HOH A 7 407 40 HOH HOH . L 7 HOH A 8 408 78 HOH HOH . L 7 HOH A 9 409 82 HOH HOH . L 7 HOH A 10 410 85 HOH HOH . L 7 HOH A 11 411 55 HOH HOH . L 7 HOH A 12 412 69 HOH HOH . L 7 HOH A 13 413 58 HOH HOH . L 7 HOH A 14 414 36 HOH HOH . L 7 HOH A 15 415 2 HOH HOH . L 7 HOH A 16 416 70 HOH HOH . L 7 HOH A 17 417 71 HOH HOH . L 7 HOH A 18 418 38 HOH HOH . L 7 HOH A 19 419 45 HOH HOH . L 7 HOH A 20 420 34 HOH HOH . L 7 HOH A 21 421 3 HOH HOH . L 7 HOH A 22 422 16 HOH HOH . L 7 HOH A 23 423 54 HOH HOH . L 7 HOH A 24 424 31 HOH HOH . L 7 HOH A 25 425 65 HOH HOH . L 7 HOH A 26 426 23 HOH HOH . L 7 HOH A 27 427 101 HOH HOH . L 7 HOH A 28 428 47 HOH HOH . L 7 HOH A 29 429 64 HOH HOH . L 7 HOH A 30 430 39 HOH HOH . L 7 HOH A 31 431 46 HOH HOH . L 7 HOH A 32 432 79 HOH HOH . L 7 HOH A 33 433 80 HOH HOH . L 7 HOH A 34 434 49 HOH HOH . L 7 HOH A 35 435 28 HOH HOH . L 7 HOH A 36 436 44 HOH HOH . L 7 HOH A 37 437 63 HOH HOH . L 7 HOH A 38 438 56 HOH HOH . L 7 HOH A 39 439 60 HOH HOH . L 7 HOH A 40 440 105 HOH HOH . L 7 HOH A 41 441 30 HOH HOH . L 7 HOH A 42 442 86 HOH HOH . L 7 HOH A 43 443 32 HOH HOH . L 7 HOH A 44 444 72 HOH HOH . L 7 HOH A 45 445 102 HOH HOH . L 7 HOH A 46 446 100 HOH HOH . L 7 HOH A 47 447 57 HOH HOH . L 7 HOH A 48 448 41 HOH HOH . L 7 HOH A 49 449 107 HOH HOH . L 7 HOH A 50 450 22 HOH HOH . L 7 HOH A 51 451 29 HOH HOH . L 7 HOH A 52 452 53 HOH HOH . L 7 HOH A 53 453 66 HOH HOH . L 7 HOH A 54 454 27 HOH HOH . L 7 HOH A 55 455 26 HOH HOH . L 7 HOH A 56 456 68 HOH HOH . L 7 HOH A 57 457 62 HOH HOH . L 7 HOH A 58 458 104 HOH HOH . L 7 HOH A 59 459 12 HOH HOH . L 7 HOH A 60 460 20 HOH HOH . L 7 HOH A 61 461 90 HOH HOH . L 7 HOH A 62 462 103 HOH HOH . L 7 HOH A 63 463 51 HOH HOH . L 7 HOH A 64 464 9 HOH HOH . L 7 HOH A 65 465 94 HOH HOH . L 7 HOH A 66 466 96 HOH HOH . L 7 HOH A 67 467 13 HOH HOH . L 7 HOH A 68 468 43 HOH HOH . L 7 HOH A 69 469 33 HOH HOH . L 7 HOH A 70 470 52 HOH HOH . M 7 HOH B 1 401 19 HOH HOH . M 7 HOH B 2 402 21 HOH HOH . M 7 HOH B 3 403 17 HOH HOH . M 7 HOH B 4 404 83 HOH HOH . M 7 HOH B 5 405 61 HOH HOH . M 7 HOH B 6 406 75 HOH HOH . M 7 HOH B 7 407 95 HOH HOH . M 7 HOH B 8 408 77 HOH HOH . M 7 HOH B 9 409 7 HOH HOH . M 7 HOH B 10 410 76 HOH HOH . M 7 HOH B 11 411 18 HOH HOH . M 7 HOH B 12 412 14 HOH HOH . M 7 HOH B 13 413 73 HOH HOH . M 7 HOH B 14 414 106 HOH HOH . M 7 HOH B 15 415 81 HOH HOH . M 7 HOH B 16 416 97 HOH HOH . M 7 HOH B 17 417 88 HOH HOH . M 7 HOH B 18 418 92 HOH HOH . M 7 HOH B 19 419 89 HOH HOH . M 7 HOH B 20 420 110 HOH HOH . M 7 HOH B 21 421 98 HOH HOH . M 7 HOH B 22 422 108 HOH HOH . M 7 HOH B 23 423 99 HOH HOH . M 7 HOH B 24 424 93 HOH HOH . M 7 HOH B 25 425 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 6DB . . . F 5 21.264 -4.822 -3.133 1 40.92 ? O 6DB 304 A 1 HETATM 2 C C 6DB . . . F 5 20.245 -5.467 -2.758 1 41.44 ? C 6DB 304 A 1 HETATM 3 C CA 6DB . . . F 5 20.082 -6.912 -3.195 1 34.07 ? CA 6DB 304 A 1 HETATM 4 C CB 6DB . . . F 5 20.725 -7.787 -2.153 1 30.01 ? CB 6DB 304 A 1 HETATM 5 N N 6DB . . . F 5 18.679 -7.293 -3.494 1 36.44 ? N 6DB 304 A 1 HETATM 6 C CAI 6DB . . . F 5 17.875 -6.372 -4.334 1 37.42 ? CAI 6DB 304 A 1 HETATM 7 C CAE 6DB . . . F 5 16.524 -6.981 -4.623 1 35.94 ? CAE 6DB 304 A 1 HETATM 8 O OAB 6DB . . . F 5 15.597 -6.312 -5.171 1 36.68 ? OAB 6DB 304 A 1 HETATM 9 O OAF 6DB . . . F 5 16.32 -8.188 -4.325 1 35.01 ? OAF 6DB 304 A 1 HETATM 10 C CAK 6DB . . . F 5 18.538 -5.97 -5.647 1 36.82 ? CAK 6DB 304 A 1 HETATM 11 C CAL 6DB . . . F 5 18.9 -7.141 -6.519 1 35.18 ? CAL 6DB 304 A 1 HETATM 12 C CAM 6DB . . . F 5 19.545 -6.88 -7.825 1 34.28 ? CAM 6DB 304 A 1 HETATM 13 N NAN 6DB . . . F 5 20.189 -8.074 -8.321 1 34.04 ? NAN 6DB 304 A 1 HETATM 14 C CAP 6DB . . . F 5 20.909 -8.082 -9.554 1 32.57 ? CAP 6DB 304 A 1 HETATM 15 N NAO 6DB . . . F 5 21.015 -7.02 -10.275 1 34.17 ? NAO 6DB 304 A 1 HETATM 16 N NAQ 6DB . . . F 5 21.487 -9.204 -9.914 1 34.52 ? NAQ 6DB 304 A 1 HETATM 17 O OXT 6DB . . . F 5 19.367 -4.959 -2.016 1 42.15 ? OXT 6DB 304 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #