data_5ITP # _model_server_result.job_id YSZYJ9W7m1-vP0S4nuYodw _model_server_result.datetime_utc '2024-11-23 00:06:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5itp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5ITP # _exptl.entry_id 5ITP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.264 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description octopine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ITP _cell.length_a 114.64 _cell.length_b 114.64 _cell.length_c 38.08 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITP _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,M 1 1 B,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # _chem_comp.formula 'C9 H18 N4 O4' _chem_comp.formula_weight 246.264 _chem_comp.id 6DB _chem_comp.mon_nstd_flag . _chem_comp.name octopine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 6DB doub 1 n n CB CA 6DB sing 2 n n C OXT 6DB sing 3 n n C CA 6DB sing 4 n n CA N 6DB sing 5 n n N CAI 6DB sing 6 n n OAB CAE 6DB doub 7 n n CAI CAE 6DB sing 8 n n CAI CAK 6DB sing 9 n n CAE OAF 6DB sing 10 n n CAK CAL 6DB sing 11 n n CAL CAM 6DB sing 12 n n CAM NAN 6DB sing 13 n n NAN CAP 6DB sing 14 n n CAP NAO 6DB doub 15 n n CAP NAQ 6DB sing 16 n n CA H1 6DB sing 17 n n CB H2 6DB sing 18 n n CB H3 6DB sing 19 n n CB H4 6DB sing 20 n n N H5 6DB sing 21 n n CAI H7 6DB sing 22 n n OAF H8 6DB sing 23 n n CAK H9 6DB sing 24 n n CAK H10 6DB sing 25 n n CAL H11 6DB sing 26 n n CAL H12 6DB sing 27 n n CAM H13 6DB sing 28 n n CAM H14 6DB sing 29 n n NAN H15 6DB sing 30 n n NAO H16 6DB sing 31 n n NAQ H18 6DB sing 32 n n NAQ H19 6DB sing 33 n n OXT H20 6DB sing 34 n n # _atom_sites.entry_id 5ITP _atom_sites.fract_transf_matrix[1][1] 0.008723 _atom_sites.fract_transf_matrix[1][2] 0.005036 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6DB A 1 301 1 6DB DRG . D 3 EDO A 1 302 1 EDO EDO . E 3 EDO A 1 303 2 EDO EDO . F 3 EDO A 1 304 4 EDO EDO . G 3 EDO A 1 305 5 EDO EDO . H 3 EDO A 1 306 6 EDO EDO . I 3 EDO A 1 307 7 EDO EDO . J 3 EDO A 1 308 8 EDO EDO . K 4 PEG A 1 309 1 PEG PEG . L 2 6DB B 1 301 1 6DB DRG . M 5 HOH A 1 401 364 HOH HOH . M 5 HOH A 2 402 18 HOH HOH . M 5 HOH A 3 403 273 HOH HOH . M 5 HOH A 4 404 173 HOH HOH . M 5 HOH A 5 405 176 HOH HOH . M 5 HOH A 6 406 155 HOH HOH . M 5 HOH A 7 407 147 HOH HOH . M 5 HOH A 8 408 397 HOH HOH . M 5 HOH A 9 409 151 HOH HOH . M 5 HOH A 10 410 332 HOH HOH . M 5 HOH A 11 411 160 HOH HOH . M 5 HOH A 12 412 148 HOH HOH . M 5 HOH A 13 413 157 HOH HOH . M 5 HOH A 14 414 369 HOH HOH . M 5 HOH A 15 415 17 HOH HOH . M 5 HOH A 16 416 202 HOH HOH . M 5 HOH A 17 417 370 HOH HOH . M 5 HOH A 18 418 62 HOH HOH . M 5 HOH A 19 419 212 HOH HOH . M 5 HOH A 20 420 24 HOH HOH . M 5 HOH A 21 421 303 HOH HOH . M 5 HOH A 22 422 179 HOH HOH . M 5 HOH A 23 423 130 HOH HOH . M 5 HOH A 24 424 146 HOH HOH . M 5 HOH A 25 425 259 HOH HOH . M 5 HOH A 26 426 112 HOH HOH . M 5 HOH A 27 427 113 HOH HOH . M 5 HOH A 28 428 11 HOH HOH . M 5 HOH A 29 429 350 HOH HOH . M 5 HOH A 30 430 333 HOH HOH . M 5 HOH A 31 431 143 HOH HOH . M 5 HOH A 32 432 304 HOH HOH . M 5 HOH A 33 433 159 HOH HOH . M 5 HOH A 34 434 156 HOH HOH . M 5 HOH A 35 435 183 HOH HOH . M 5 HOH A 36 436 127 HOH HOH . M 5 HOH A 37 437 248 HOH HOH . M 5 HOH A 38 438 267 HOH HOH . M 5 HOH A 39 439 262 HOH HOH . M 5 HOH A 40 440 335 HOH HOH . M 5 HOH A 41 441 385 HOH HOH . M 5 HOH A 42 442 254 HOH HOH . M 5 HOH A 43 443 200 HOH HOH . M 5 HOH A 44 444 145 HOH HOH . M 5 HOH A 45 445 165 HOH HOH . M 5 HOH A 46 446 204 HOH HOH . M 5 HOH A 47 447 32 HOH HOH . M 5 HOH A 48 448 164 HOH HOH . M 5 HOH A 49 449 40 HOH HOH . M 5 HOH A 50 450 13 HOH HOH . M 5 HOH A 51 451 182 HOH HOH . M 5 HOH A 52 452 323 HOH HOH . M 5 HOH A 53 453 7 HOH HOH . M 5 HOH A 54 454 142 HOH HOH . M 5 HOH A 55 455 272 HOH HOH . M 5 HOH A 56 456 8 HOH HOH . M 5 HOH A 57 457 319 HOH HOH . M 5 HOH A 58 458 220 HOH HOH . M 5 HOH A 59 459 281 HOH HOH . M 5 HOH A 60 460 2 HOH HOH . M 5 HOH A 61 461 336 HOH HOH . M 5 HOH A 62 462 345 HOH HOH . M 5 HOH A 63 463 23 HOH HOH . M 5 HOH A 64 464 137 HOH HOH . M 5 HOH A 65 465 36 HOH HOH . M 5 HOH A 66 466 129 HOH HOH . M 5 HOH A 67 467 172 HOH HOH . M 5 HOH A 68 468 170 HOH HOH . M 5 HOH A 69 469 154 HOH HOH . M 5 HOH A 70 470 153 HOH HOH . M 5 HOH A 71 471 208 HOH HOH . M 5 HOH A 72 472 209 HOH HOH . M 5 HOH A 73 473 288 HOH HOH . M 5 HOH A 74 474 115 HOH HOH . M 5 HOH A 75 475 279 HOH HOH . M 5 HOH A 76 476 6 HOH HOH . M 5 HOH A 77 477 27 HOH HOH . M 5 HOH A 78 478 334 HOH HOH . M 5 HOH A 79 479 294 HOH HOH . M 5 HOH A 80 480 214 HOH HOH . M 5 HOH A 81 481 255 HOH HOH . M 5 HOH A 82 482 163 HOH HOH . M 5 HOH A 83 483 134 HOH HOH . M 5 HOH A 84 484 330 HOH HOH . M 5 HOH A 85 485 132 HOH HOH . M 5 HOH A 86 486 150 HOH HOH . M 5 HOH A 87 487 299 HOH HOH . M 5 HOH A 88 488 295 HOH HOH . M 5 HOH A 89 489 19 HOH HOH . M 5 HOH A 90 490 20 HOH HOH . M 5 HOH A 91 491 263 HOH HOH . M 5 HOH A 92 492 10 HOH HOH . M 5 HOH A 93 493 286 HOH HOH . M 5 HOH A 94 494 12 HOH HOH . M 5 HOH A 95 495 194 HOH HOH . M 5 HOH A 96 496 184 HOH HOH . M 5 HOH A 97 497 5 HOH HOH . M 5 HOH A 98 498 162 HOH HOH . M 5 HOH A 99 499 360 HOH HOH . M 5 HOH A 100 500 391 HOH HOH . M 5 HOH A 101 501 196 HOH HOH . M 5 HOH A 102 502 29 HOH HOH . M 5 HOH A 103 503 239 HOH HOH . M 5 HOH A 104 504 14 HOH HOH . M 5 HOH A 105 505 169 HOH HOH . M 5 HOH A 106 506 343 HOH HOH . M 5 HOH A 107 507 193 HOH HOH . M 5 HOH A 108 508 43 HOH HOH . M 5 HOH A 109 509 246 HOH HOH . M 5 HOH A 110 510 26 HOH HOH . M 5 HOH A 111 511 140 HOH HOH . M 5 HOH A 112 512 31 HOH HOH . M 5 HOH A 113 513 347 HOH HOH . M 5 HOH A 114 514 310 HOH HOH . M 5 HOH A 115 515 152 HOH HOH . M 5 HOH A 116 516 264 HOH HOH . M 5 HOH A 117 517 149 HOH HOH . M 5 HOH A 118 518 28 HOH HOH . M 5 HOH A 119 519 139 HOH HOH . M 5 HOH A 120 520 292 HOH HOH . M 5 HOH A 121 521 278 HOH HOH . M 5 HOH A 122 522 324 HOH HOH . M 5 HOH A 123 523 257 HOH HOH . M 5 HOH A 124 524 316 HOH HOH . M 5 HOH A 125 525 175 HOH HOH . M 5 HOH A 126 526 180 HOH HOH . M 5 HOH A 127 527 394 HOH HOH . M 5 HOH A 128 528 258 HOH HOH . M 5 HOH A 129 529 261 HOH HOH . M 5 HOH A 130 530 15 HOH HOH . M 5 HOH A 131 531 351 HOH HOH . M 5 HOH A 132 532 161 HOH HOH . M 5 HOH A 133 533 366 HOH HOH . M 5 HOH A 134 534 256 HOH HOH . M 5 HOH A 135 535 3 HOH HOH . M 5 HOH A 136 536 131 HOH HOH . M 5 HOH A 137 537 325 HOH HOH . M 5 HOH A 138 538 287 HOH HOH . M 5 HOH A 139 539 251 HOH HOH . M 5 HOH A 140 540 185 HOH HOH . M 5 HOH A 141 541 275 HOH HOH . M 5 HOH A 142 542 395 HOH HOH . M 5 HOH A 143 543 186 HOH HOH . M 5 HOH A 144 544 138 HOH HOH . M 5 HOH A 145 545 136 HOH HOH . M 5 HOH A 146 546 268 HOH HOH . M 5 HOH A 147 547 320 HOH HOH . M 5 HOH A 148 548 327 HOH HOH . M 5 HOH A 149 549 135 HOH HOH . M 5 HOH A 150 550 322 HOH HOH . M 5 HOH A 151 551 260 HOH HOH . M 5 HOH A 152 552 207 HOH HOH . M 5 HOH A 153 553 178 HOH HOH . M 5 HOH A 154 554 277 HOH HOH . M 5 HOH A 155 555 133 HOH HOH . M 5 HOH A 156 556 203 HOH HOH . M 5 HOH A 157 557 338 HOH HOH . M 5 HOH A 158 558 215 HOH HOH . M 5 HOH A 159 559 128 HOH HOH . M 5 HOH A 160 560 249 HOH HOH . M 5 HOH A 161 561 265 HOH HOH . M 5 HOH A 162 562 171 HOH HOH . M 5 HOH A 163 563 355 HOH HOH . M 5 HOH A 164 564 392 HOH HOH . M 5 HOH A 165 565 167 HOH HOH . M 5 HOH A 166 566 174 HOH HOH . M 5 HOH A 167 567 192 HOH HOH . M 5 HOH A 168 568 283 HOH HOH . M 5 HOH A 169 569 315 HOH HOH . M 5 HOH A 170 570 393 HOH HOH . M 5 HOH A 171 571 298 HOH HOH . M 5 HOH A 172 572 110 HOH HOH . M 5 HOH A 173 573 190 HOH HOH . M 5 HOH A 174 574 396 HOH HOH . M 5 HOH A 175 575 188 HOH HOH . M 5 HOH A 176 576 166 HOH HOH . M 5 HOH A 177 577 247 HOH HOH . M 5 HOH A 178 578 191 HOH HOH . M 5 HOH A 179 579 356 HOH HOH . M 5 HOH A 180 580 361 HOH HOH . M 5 HOH A 181 581 198 HOH HOH . M 5 HOH A 182 582 384 HOH HOH . M 5 HOH A 183 583 250 HOH HOH . M 5 HOH A 184 584 199 HOH HOH . M 5 HOH A 185 585 365 HOH HOH . M 5 HOH A 186 586 358 HOH HOH . N 5 HOH B 1 401 305 HOH HOH . N 5 HOH B 2 402 307 HOH HOH . N 5 HOH B 3 403 378 HOH HOH . N 5 HOH B 4 404 222 HOH HOH . N 5 HOH B 5 405 230 HOH HOH . N 5 HOH B 6 406 243 HOH HOH . N 5 HOH B 7 407 296 HOH HOH . N 5 HOH B 8 408 117 HOH HOH . N 5 HOH B 9 409 218 HOH HOH . N 5 HOH B 10 410 302 HOH HOH . N 5 HOH B 11 411 293 HOH HOH . N 5 HOH B 12 412 141 HOH HOH . N 5 HOH B 13 413 118 HOH HOH . N 5 HOH B 14 414 114 HOH HOH . N 5 HOH B 15 415 300 HOH HOH . N 5 HOH B 16 416 377 HOH HOH . N 5 HOH B 17 417 223 HOH HOH . N 5 HOH B 18 418 266 HOH HOH . N 5 HOH B 19 419 342 HOH HOH . N 5 HOH B 20 420 339 HOH HOH . N 5 HOH B 21 421 1 HOH HOH . N 5 HOH B 22 422 33 HOH HOH . N 5 HOH B 23 423 282 HOH HOH . N 5 HOH B 24 424 242 HOH HOH . N 5 HOH B 25 425 4 HOH HOH . N 5 HOH B 26 426 225 HOH HOH . N 5 HOH B 27 427 123 HOH HOH . N 5 HOH B 28 428 311 HOH HOH . N 5 HOH B 29 429 390 HOH HOH . N 5 HOH B 30 430 237 HOH HOH . N 5 HOH B 31 431 216 HOH HOH . N 5 HOH B 32 432 217 HOH HOH . N 5 HOH B 33 433 226 HOH HOH . N 5 HOH B 34 434 124 HOH HOH . N 5 HOH B 35 435 318 HOH HOH . N 5 HOH B 36 436 227 HOH HOH . N 5 HOH B 37 437 22 HOH HOH . N 5 HOH B 38 438 116 HOH HOH . N 5 HOH B 39 439 244 HOH HOH . N 5 HOH B 40 440 380 HOH HOH . N 5 HOH B 41 441 229 HOH HOH . N 5 HOH B 42 442 34 HOH HOH . N 5 HOH B 43 443 271 HOH HOH . N 5 HOH B 44 444 291 HOH HOH . N 5 HOH B 45 445 285 HOH HOH . N 5 HOH B 46 446 326 HOH HOH . N 5 HOH B 47 447 297 HOH HOH . N 5 HOH B 48 448 121 HOH HOH . N 5 HOH B 49 449 308 HOH HOH . N 5 HOH B 50 450 373 HOH HOH . N 5 HOH B 51 451 122 HOH HOH . N 5 HOH B 52 452 269 HOH HOH . N 5 HOH B 53 453 375 HOH HOH . N 5 HOH B 54 454 238 HOH HOH . N 5 HOH B 55 455 340 HOH HOH . N 5 HOH B 56 456 329 HOH HOH . N 5 HOH B 57 457 274 HOH HOH . N 5 HOH B 58 458 233 HOH HOH . N 5 HOH B 59 459 126 HOH HOH . N 5 HOH B 60 460 382 HOH HOH . N 5 HOH B 61 461 234 HOH HOH . N 5 HOH B 62 462 321 HOH HOH . N 5 HOH B 63 463 219 HOH HOH . N 5 HOH B 64 464 228 HOH HOH . N 5 HOH B 65 465 125 HOH HOH . N 5 HOH B 66 466 313 HOH HOH . N 5 HOH B 67 467 379 HOH HOH . N 5 HOH B 68 468 111 HOH HOH . N 5 HOH B 69 469 241 HOH HOH . N 5 HOH B 70 470 240 HOH HOH . N 5 HOH B 71 471 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 6DB . . . C 2 -14.089 80.644 -1.048 1 25.06 ? O 6DB 301 A 1 HETATM 2 C C 6DB . . . C 2 -14.973 81.19 -0.357 1 24.76 ? C 6DB 301 A 1 HETATM 3 C CA 6DB . . . C 2 -16.103 80.318 0.194 1 22.6 ? CA 6DB 301 A 1 HETATM 4 C CB 6DB . . . C 2 -17.3 80.403 -0.687 1 22.22 ? CB 6DB 301 A 1 HETATM 5 N N 6DB . . . C 2 -15.707 78.919 0.377 1 21.03 ? N 6DB 301 A 1 HETATM 6 C CAI 6DB . . . C 2 -14.516 78.647 1.176 1 21.74 ? CAI 6DB 301 A 1 HETATM 7 C CAE 6DB . . . C 2 -14.384 77.171 1.466 1 22.09 ? CAE 6DB 301 A 1 HETATM 8 O OAB 6DB . . . C 2 -15.287 76.369 1.118 1 21.98 ? OAB 6DB 301 A 1 HETATM 9 O OAF 6DB . . . C 2 -13.367 76.753 2.087 1 21.12 ? OAF 6DB 301 A 1 HETATM 10 C CAK 6DB . . . C 2 -14.444 79.384 2.535 1 20.04 ? CAK 6DB 301 A 1 HETATM 11 C CAL 6DB . . . C 2 -15.565 79 3.485 1 21.87 ? CAL 6DB 301 A 1 HETATM 12 C CAM 6DB . . . C 2 -15.54 79.66 4.866 1 23.62 ? CAM 6DB 301 A 1 HETATM 13 N NAN 6DB . . . C 2 -16.906 79.59 5.449 1 21.95 ? NAN 6DB 301 A 1 HETATM 14 C CAP 6DB . . . C 2 -17.339 80.313 6.604 1 22.5 ? CAP 6DB 301 A 1 HETATM 15 N NAO 6DB . . . C 2 -18.574 80.192 7.029 1 24.22 ? NAO 6DB 301 A 1 HETATM 16 N NAQ 6DB . . . C 2 -16.46 81.011 7.238 1 22.5 ? NAQ 6DB 301 A 1 HETATM 17 O OXT 6DB . . . C 2 -14.924 82.421 -0.114 1 26.42 ? OXT 6DB 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #