data_5ITP
#
_model_server_result.job_id            lQ1YQV4P8EOywHrP_EXu-Q 
_model_server_result.datetime_utc      '2024-11-26 13:55:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5itp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":308}' 
#
_entry.id    5ITP 
#
_exptl.entry_id    5ITP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ITP 
_cell.length_a            114.64 
_cell.length_b            114.64 
_cell.length_c            38.08 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ITP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,M 1 1 
B,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 117 n n 
C1 C2 EDO sing 118 n n 
C1 H11 EDO sing 119 n n 
C1 H12 EDO sing 120 n n 
O1 HO1 EDO sing 121 n n 
C2 O2 EDO sing 122 n n 
C2 H21 EDO sing 123 n n 
C2 H22 EDO sing 124 n n 
O2 HO2 EDO sing 125 n n 
#
_atom_sites.entry_id                     5ITP 
_atom_sites.fract_transf_matrix[1][1]    0.008723 
_atom_sites.fract_transf_matrix[1][2]    0.005036 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6DB A 1 301 1 6DB DRG . 
D 3 EDO A 1 302 1 EDO EDO . 
E 3 EDO A 1 303 2 EDO EDO . 
F 3 EDO A 1 304 4 EDO EDO . 
G 3 EDO A 1 305 5 EDO EDO . 
H 3 EDO A 1 306 6 EDO EDO . 
I 3 EDO A 1 307 7 EDO EDO . 
J 3 EDO A 1 308 8 EDO EDO . 
K 4 PEG A 1 309 1 PEG PEG . 
L 2 6DB B 1 301 1 6DB DRG . 
M 5 HOH A 1 401 364 HOH HOH . 
M 5 HOH A 2 402 18 HOH HOH . 
M 5 HOH A 3 403 273 HOH HOH . 
M 5 HOH A 4 404 173 HOH HOH . 
M 5 HOH A 5 405 176 HOH HOH . 
M 5 HOH A 6 406 155 HOH HOH . 
M 5 HOH A 7 407 147 HOH HOH . 
M 5 HOH A 8 408 397 HOH HOH . 
M 5 HOH A 9 409 151 HOH HOH . 
M 5 HOH A 10 410 332 HOH HOH . 
M 5 HOH A 11 411 160 HOH HOH . 
M 5 HOH A 12 412 148 HOH HOH . 
M 5 HOH A 13 413 157 HOH HOH . 
M 5 HOH A 14 414 369 HOH HOH . 
M 5 HOH A 15 415 17 HOH HOH . 
M 5 HOH A 16 416 202 HOH HOH . 
M 5 HOH A 17 417 370 HOH HOH . 
M 5 HOH A 18 418 62 HOH HOH . 
M 5 HOH A 19 419 212 HOH HOH . 
M 5 HOH A 20 420 24 HOH HOH . 
M 5 HOH A 21 421 303 HOH HOH . 
M 5 HOH A 22 422 179 HOH HOH . 
M 5 HOH A 23 423 130 HOH HOH . 
M 5 HOH A 24 424 146 HOH HOH . 
M 5 HOH A 25 425 259 HOH HOH . 
M 5 HOH A 26 426 112 HOH HOH . 
M 5 HOH A 27 427 113 HOH HOH . 
M 5 HOH A 28 428 11 HOH HOH . 
M 5 HOH A 29 429 350 HOH HOH . 
M 5 HOH A 30 430 333 HOH HOH . 
M 5 HOH A 31 431 143 HOH HOH . 
M 5 HOH A 32 432 304 HOH HOH . 
M 5 HOH A 33 433 159 HOH HOH . 
M 5 HOH A 34 434 156 HOH HOH . 
M 5 HOH A 35 435 183 HOH HOH . 
M 5 HOH A 36 436 127 HOH HOH . 
M 5 HOH A 37 437 248 HOH HOH . 
M 5 HOH A 38 438 267 HOH HOH . 
M 5 HOH A 39 439 262 HOH HOH . 
M 5 HOH A 40 440 335 HOH HOH . 
M 5 HOH A 41 441 385 HOH HOH . 
M 5 HOH A 42 442 254 HOH HOH . 
M 5 HOH A 43 443 200 HOH HOH . 
M 5 HOH A 44 444 145 HOH HOH . 
M 5 HOH A 45 445 165 HOH HOH . 
M 5 HOH A 46 446 204 HOH HOH . 
M 5 HOH A 47 447 32 HOH HOH . 
M 5 HOH A 48 448 164 HOH HOH . 
M 5 HOH A 49 449 40 HOH HOH . 
M 5 HOH A 50 450 13 HOH HOH . 
M 5 HOH A 51 451 182 HOH HOH . 
M 5 HOH A 52 452 323 HOH HOH . 
M 5 HOH A 53 453 7 HOH HOH . 
M 5 HOH A 54 454 142 HOH HOH . 
M 5 HOH A 55 455 272 HOH HOH . 
M 5 HOH A 56 456 8 HOH HOH . 
M 5 HOH A 57 457 319 HOH HOH . 
M 5 HOH A 58 458 220 HOH HOH . 
M 5 HOH A 59 459 281 HOH HOH . 
M 5 HOH A 60 460 2 HOH HOH . 
M 5 HOH A 61 461 336 HOH HOH . 
M 5 HOH A 62 462 345 HOH HOH . 
M 5 HOH A 63 463 23 HOH HOH . 
M 5 HOH A 64 464 137 HOH HOH . 
M 5 HOH A 65 465 36 HOH HOH . 
M 5 HOH A 66 466 129 HOH HOH . 
M 5 HOH A 67 467 172 HOH HOH . 
M 5 HOH A 68 468 170 HOH HOH . 
M 5 HOH A 69 469 154 HOH HOH . 
M 5 HOH A 70 470 153 HOH HOH . 
M 5 HOH A 71 471 208 HOH HOH . 
M 5 HOH A 72 472 209 HOH HOH . 
M 5 HOH A 73 473 288 HOH HOH . 
M 5 HOH A 74 474 115 HOH HOH . 
M 5 HOH A 75 475 279 HOH HOH . 
M 5 HOH A 76 476 6 HOH HOH . 
M 5 HOH A 77 477 27 HOH HOH . 
M 5 HOH A 78 478 334 HOH HOH . 
M 5 HOH A 79 479 294 HOH HOH . 
M 5 HOH A 80 480 214 HOH HOH . 
M 5 HOH A 81 481 255 HOH HOH . 
M 5 HOH A 82 482 163 HOH HOH . 
M 5 HOH A 83 483 134 HOH HOH . 
M 5 HOH A 84 484 330 HOH HOH . 
M 5 HOH A 85 485 132 HOH HOH . 
M 5 HOH A 86 486 150 HOH HOH . 
M 5 HOH A 87 487 299 HOH HOH . 
M 5 HOH A 88 488 295 HOH HOH . 
M 5 HOH A 89 489 19 HOH HOH . 
M 5 HOH A 90 490 20 HOH HOH . 
M 5 HOH A 91 491 263 HOH HOH . 
M 5 HOH A 92 492 10 HOH HOH . 
M 5 HOH A 93 493 286 HOH HOH . 
M 5 HOH A 94 494 12 HOH HOH . 
M 5 HOH A 95 495 194 HOH HOH . 
M 5 HOH A 96 496 184 HOH HOH . 
M 5 HOH A 97 497 5 HOH HOH . 
M 5 HOH A 98 498 162 HOH HOH . 
M 5 HOH A 99 499 360 HOH HOH . 
M 5 HOH A 100 500 391 HOH HOH . 
M 5 HOH A 101 501 196 HOH HOH . 
M 5 HOH A 102 502 29 HOH HOH . 
M 5 HOH A 103 503 239 HOH HOH . 
M 5 HOH A 104 504 14 HOH HOH . 
M 5 HOH A 105 505 169 HOH HOH . 
M 5 HOH A 106 506 343 HOH HOH . 
M 5 HOH A 107 507 193 HOH HOH . 
M 5 HOH A 108 508 43 HOH HOH . 
M 5 HOH A 109 509 246 HOH HOH . 
M 5 HOH A 110 510 26 HOH HOH . 
M 5 HOH A 111 511 140 HOH HOH . 
M 5 HOH A 112 512 31 HOH HOH . 
M 5 HOH A 113 513 347 HOH HOH . 
M 5 HOH A 114 514 310 HOH HOH . 
M 5 HOH A 115 515 152 HOH HOH . 
M 5 HOH A 116 516 264 HOH HOH . 
M 5 HOH A 117 517 149 HOH HOH . 
M 5 HOH A 118 518 28 HOH HOH . 
M 5 HOH A 119 519 139 HOH HOH . 
M 5 HOH A 120 520 292 HOH HOH . 
M 5 HOH A 121 521 278 HOH HOH . 
M 5 HOH A 122 522 324 HOH HOH . 
M 5 HOH A 123 523 257 HOH HOH . 
M 5 HOH A 124 524 316 HOH HOH . 
M 5 HOH A 125 525 175 HOH HOH . 
M 5 HOH A 126 526 180 HOH HOH . 
M 5 HOH A 127 527 394 HOH HOH . 
M 5 HOH A 128 528 258 HOH HOH . 
M 5 HOH A 129 529 261 HOH HOH . 
M 5 HOH A 130 530 15 HOH HOH . 
M 5 HOH A 131 531 351 HOH HOH . 
M 5 HOH A 132 532 161 HOH HOH . 
M 5 HOH A 133 533 366 HOH HOH . 
M 5 HOH A 134 534 256 HOH HOH . 
M 5 HOH A 135 535 3 HOH HOH . 
M 5 HOH A 136 536 131 HOH HOH . 
M 5 HOH A 137 537 325 HOH HOH . 
M 5 HOH A 138 538 287 HOH HOH . 
M 5 HOH A 139 539 251 HOH HOH . 
M 5 HOH A 140 540 185 HOH HOH . 
M 5 HOH A 141 541 275 HOH HOH . 
M 5 HOH A 142 542 395 HOH HOH . 
M 5 HOH A 143 543 186 HOH HOH . 
M 5 HOH A 144 544 138 HOH HOH . 
M 5 HOH A 145 545 136 HOH HOH . 
M 5 HOH A 146 546 268 HOH HOH . 
M 5 HOH A 147 547 320 HOH HOH . 
M 5 HOH A 148 548 327 HOH HOH . 
M 5 HOH A 149 549 135 HOH HOH . 
M 5 HOH A 150 550 322 HOH HOH . 
M 5 HOH A 151 551 260 HOH HOH . 
M 5 HOH A 152 552 207 HOH HOH . 
M 5 HOH A 153 553 178 HOH HOH . 
M 5 HOH A 154 554 277 HOH HOH . 
M 5 HOH A 155 555 133 HOH HOH . 
M 5 HOH A 156 556 203 HOH HOH . 
M 5 HOH A 157 557 338 HOH HOH . 
M 5 HOH A 158 558 215 HOH HOH . 
M 5 HOH A 159 559 128 HOH HOH . 
M 5 HOH A 160 560 249 HOH HOH . 
M 5 HOH A 161 561 265 HOH HOH . 
M 5 HOH A 162 562 171 HOH HOH . 
M 5 HOH A 163 563 355 HOH HOH . 
M 5 HOH A 164 564 392 HOH HOH . 
M 5 HOH A 165 565 167 HOH HOH . 
M 5 HOH A 166 566 174 HOH HOH . 
M 5 HOH A 167 567 192 HOH HOH . 
M 5 HOH A 168 568 283 HOH HOH . 
M 5 HOH A 169 569 315 HOH HOH . 
M 5 HOH A 170 570 393 HOH HOH . 
M 5 HOH A 171 571 298 HOH HOH . 
M 5 HOH A 172 572 110 HOH HOH . 
M 5 HOH A 173 573 190 HOH HOH . 
M 5 HOH A 174 574 396 HOH HOH . 
M 5 HOH A 175 575 188 HOH HOH . 
M 5 HOH A 176 576 166 HOH HOH . 
M 5 HOH A 177 577 247 HOH HOH . 
M 5 HOH A 178 578 191 HOH HOH . 
M 5 HOH A 179 579 356 HOH HOH . 
M 5 HOH A 180 580 361 HOH HOH . 
M 5 HOH A 181 581 198 HOH HOH . 
M 5 HOH A 182 582 384 HOH HOH . 
M 5 HOH A 183 583 250 HOH HOH . 
M 5 HOH A 184 584 199 HOH HOH . 
M 5 HOH A 185 585 365 HOH HOH . 
M 5 HOH A 186 586 358 HOH HOH . 
N 5 HOH B 1 401 305 HOH HOH . 
N 5 HOH B 2 402 307 HOH HOH . 
N 5 HOH B 3 403 378 HOH HOH . 
N 5 HOH B 4 404 222 HOH HOH . 
N 5 HOH B 5 405 230 HOH HOH . 
N 5 HOH B 6 406 243 HOH HOH . 
N 5 HOH B 7 407 296 HOH HOH . 
N 5 HOH B 8 408 117 HOH HOH . 
N 5 HOH B 9 409 218 HOH HOH . 
N 5 HOH B 10 410 302 HOH HOH . 
N 5 HOH B 11 411 293 HOH HOH . 
N 5 HOH B 12 412 141 HOH HOH . 
N 5 HOH B 13 413 118 HOH HOH . 
N 5 HOH B 14 414 114 HOH HOH . 
N 5 HOH B 15 415 300 HOH HOH . 
N 5 HOH B 16 416 377 HOH HOH . 
N 5 HOH B 17 417 223 HOH HOH . 
N 5 HOH B 18 418 266 HOH HOH . 
N 5 HOH B 19 419 342 HOH HOH . 
N 5 HOH B 20 420 339 HOH HOH . 
N 5 HOH B 21 421 1 HOH HOH . 
N 5 HOH B 22 422 33 HOH HOH . 
N 5 HOH B 23 423 282 HOH HOH . 
N 5 HOH B 24 424 242 HOH HOH . 
N 5 HOH B 25 425 4 HOH HOH . 
N 5 HOH B 26 426 225 HOH HOH . 
N 5 HOH B 27 427 123 HOH HOH . 
N 5 HOH B 28 428 311 HOH HOH . 
N 5 HOH B 29 429 390 HOH HOH . 
N 5 HOH B 30 430 237 HOH HOH . 
N 5 HOH B 31 431 216 HOH HOH . 
N 5 HOH B 32 432 217 HOH HOH . 
N 5 HOH B 33 433 226 HOH HOH . 
N 5 HOH B 34 434 124 HOH HOH . 
N 5 HOH B 35 435 318 HOH HOH . 
N 5 HOH B 36 436 227 HOH HOH . 
N 5 HOH B 37 437 22 HOH HOH . 
N 5 HOH B 38 438 116 HOH HOH . 
N 5 HOH B 39 439 244 HOH HOH . 
N 5 HOH B 40 440 380 HOH HOH . 
N 5 HOH B 41 441 229 HOH HOH . 
N 5 HOH B 42 442 34 HOH HOH . 
N 5 HOH B 43 443 271 HOH HOH . 
N 5 HOH B 44 444 291 HOH HOH . 
N 5 HOH B 45 445 285 HOH HOH . 
N 5 HOH B 46 446 326 HOH HOH . 
N 5 HOH B 47 447 297 HOH HOH . 
N 5 HOH B 48 448 121 HOH HOH . 
N 5 HOH B 49 449 308 HOH HOH . 
N 5 HOH B 50 450 373 HOH HOH . 
N 5 HOH B 51 451 122 HOH HOH . 
N 5 HOH B 52 452 269 HOH HOH . 
N 5 HOH B 53 453 375 HOH HOH . 
N 5 HOH B 54 454 238 HOH HOH . 
N 5 HOH B 55 455 340 HOH HOH . 
N 5 HOH B 56 456 329 HOH HOH . 
N 5 HOH B 57 457 274 HOH HOH . 
N 5 HOH B 58 458 233 HOH HOH . 
N 5 HOH B 59 459 126 HOH HOH . 
N 5 HOH B 60 460 382 HOH HOH . 
N 5 HOH B 61 461 234 HOH HOH . 
N 5 HOH B 62 462 321 HOH HOH . 
N 5 HOH B 63 463 219 HOH HOH . 
N 5 HOH B 64 464 228 HOH HOH . 
N 5 HOH B 65 465 125 HOH HOH . 
N 5 HOH B 66 466 313 HOH HOH . 
N 5 HOH B 67 467 379 HOH HOH . 
N 5 HOH B 68 468 111 HOH HOH . 
N 5 HOH B 69 469 241 HOH HOH . 
N 5 HOH B 70 470 240 HOH HOH . 
N 5 HOH B 71 471 224 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 7.847 91.972 -10.82 1 60.15 ? C1 EDO 308 A 1 
HETATM 2 O O1 EDO . . . J 3 6.656 91.238 -10.566 1 60.77 ? O1 EDO 308 A 1 
HETATM 3 C C2 EDO . . . J 3 8.301 91.789 -12.293 1 57.89 ? C2 EDO 308 A 1 
HETATM 4 O O2 EDO . . . J 3 9.438 92.602 -12.549 1 56.31 ? O2 EDO 308 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#