data_5ITV # _model_server_result.job_id bbCTBulKRRO3jdPy6n2Bpg _model_server_result.datetime_utc '2025-03-09 02:33:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5itv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5ITV # _exptl.entry_id 5ITV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.44 _cell.angle_gamma 90 _cell.entry_id 5ITV _cell.length_a 74.75 _cell.length_b 88.08 _cell.length_c 78.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ITV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 5ITV _atom_sites.fract_transf_matrix[1][1] 0.013378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003947 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011353 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAI A 1 301 1 NAI NAD . F 2 NAI B 1 301 2 NAI NAD . G 2 NAI C 1 301 4 NAI NAD . H 2 NAI D 1 301 3 NAI NAD . I 3 HOH A 1 401 59 HOH HOH . I 3 HOH A 2 402 17 HOH HOH . I 3 HOH A 3 403 124 HOH HOH . I 3 HOH A 4 404 127 HOH HOH . I 3 HOH A 5 405 1 HOH HOH . I 3 HOH A 6 406 30 HOH HOH . I 3 HOH A 7 407 46 HOH HOH . I 3 HOH A 8 408 116 HOH HOH . I 3 HOH A 9 409 130 HOH HOH . I 3 HOH A 10 410 3 HOH HOH . I 3 HOH A 11 411 125 HOH HOH . I 3 HOH A 12 412 73 HOH HOH . I 3 HOH A 13 413 16 HOH HOH . I 3 HOH A 14 414 90 HOH HOH . I 3 HOH A 15 415 7 HOH HOH . I 3 HOH A 16 416 11 HOH HOH . I 3 HOH A 17 417 113 HOH HOH . I 3 HOH A 18 418 55 HOH HOH . I 3 HOH A 19 419 132 HOH HOH . I 3 HOH A 20 420 5 HOH HOH . I 3 HOH A 21 421 131 HOH HOH . I 3 HOH A 22 422 69 HOH HOH . I 3 HOH A 23 423 61 HOH HOH . I 3 HOH A 24 424 62 HOH HOH . I 3 HOH A 25 425 19 HOH HOH . I 3 HOH A 26 426 70 HOH HOH . I 3 HOH A 27 427 38 HOH HOH . I 3 HOH A 28 428 96 HOH HOH . I 3 HOH A 29 429 63 HOH HOH . I 3 HOH A 30 430 27 HOH HOH . I 3 HOH A 31 431 77 HOH HOH . I 3 HOH A 32 432 78 HOH HOH . I 3 HOH A 33 433 15 HOH HOH . I 3 HOH A 34 434 74 HOH HOH . I 3 HOH A 35 435 135 HOH HOH . I 3 HOH A 36 436 75 HOH HOH . I 3 HOH A 37 437 52 HOH HOH . I 3 HOH A 38 438 29 HOH HOH . I 3 HOH A 39 439 58 HOH HOH . I 3 HOH A 40 440 51 HOH HOH . I 3 HOH A 41 441 98 HOH HOH . J 3 HOH B 1 401 2 HOH HOH . J 3 HOH B 2 402 24 HOH HOH . J 3 HOH B 3 403 81 HOH HOH . J 3 HOH B 4 404 118 HOH HOH . J 3 HOH B 5 405 12 HOH HOH . J 3 HOH B 6 406 20 HOH HOH . J 3 HOH B 7 407 43 HOH HOH . J 3 HOH B 8 408 26 HOH HOH . J 3 HOH B 9 409 23 HOH HOH . J 3 HOH B 10 410 40 HOH HOH . J 3 HOH B 11 411 14 HOH HOH . J 3 HOH B 12 412 50 HOH HOH . J 3 HOH B 13 413 76 HOH HOH . J 3 HOH B 14 414 28 HOH HOH . J 3 HOH B 15 415 106 HOH HOH . J 3 HOH B 16 416 13 HOH HOH . J 3 HOH B 17 417 67 HOH HOH . J 3 HOH B 18 418 48 HOH HOH . J 3 HOH B 19 419 93 HOH HOH . J 3 HOH B 20 420 103 HOH HOH . J 3 HOH B 21 421 86 HOH HOH . J 3 HOH B 22 422 66 HOH HOH . J 3 HOH B 23 423 79 HOH HOH . J 3 HOH B 24 424 49 HOH HOH . J 3 HOH B 25 425 18 HOH HOH . J 3 HOH B 26 426 35 HOH HOH . J 3 HOH B 27 427 64 HOH HOH . J 3 HOH B 28 428 87 HOH HOH . J 3 HOH B 29 429 112 HOH HOH . J 3 HOH B 30 430 108 HOH HOH . J 3 HOH B 31 431 33 HOH HOH . J 3 HOH B 32 432 56 HOH HOH . J 3 HOH B 33 433 32 HOH HOH . J 3 HOH B 34 434 105 HOH HOH . J 3 HOH B 35 435 72 HOH HOH . J 3 HOH B 36 436 95 HOH HOH . J 3 HOH B 37 437 107 HOH HOH . J 3 HOH B 38 438 102 HOH HOH . J 3 HOH B 39 439 128 HOH HOH . J 3 HOH B 40 440 57 HOH HOH . J 3 HOH B 41 441 101 HOH HOH . J 3 HOH B 42 442 99 HOH HOH . K 3 HOH C 1 401 21 HOH HOH . K 3 HOH C 2 402 4 HOH HOH . K 3 HOH C 3 403 122 HOH HOH . K 3 HOH C 4 404 54 HOH HOH . K 3 HOH C 5 405 117 HOH HOH . K 3 HOH C 6 406 126 HOH HOH . K 3 HOH C 7 407 89 HOH HOH . K 3 HOH C 8 408 104 HOH HOH . K 3 HOH C 9 409 85 HOH HOH . K 3 HOH C 10 410 71 HOH HOH . K 3 HOH C 11 411 41 HOH HOH . K 3 HOH C 12 412 120 HOH HOH . K 3 HOH C 13 413 92 HOH HOH . K 3 HOH C 14 414 47 HOH HOH . K 3 HOH C 15 415 8 HOH HOH . K 3 HOH C 16 416 9 HOH HOH . K 3 HOH C 17 417 37 HOH HOH . K 3 HOH C 18 418 65 HOH HOH . K 3 HOH C 19 419 84 HOH HOH . K 3 HOH C 20 420 6 HOH HOH . K 3 HOH C 21 421 39 HOH HOH . K 3 HOH C 22 422 45 HOH HOH . K 3 HOH C 23 423 121 HOH HOH . K 3 HOH C 24 424 129 HOH HOH . K 3 HOH C 25 425 31 HOH HOH . L 3 HOH D 1 401 44 HOH HOH . L 3 HOH D 2 402 68 HOH HOH . L 3 HOH D 3 403 10 HOH HOH . L 3 HOH D 4 404 94 HOH HOH . L 3 HOH D 5 405 114 HOH HOH . L 3 HOH D 6 406 100 HOH HOH . L 3 HOH D 7 407 25 HOH HOH . L 3 HOH D 8 408 109 HOH HOH . L 3 HOH D 9 409 42 HOH HOH . L 3 HOH D 10 410 60 HOH HOH . L 3 HOH D 11 411 111 HOH HOH . L 3 HOH D 12 412 123 HOH HOH . L 3 HOH D 13 413 133 HOH HOH . L 3 HOH D 14 414 34 HOH HOH . L 3 HOH D 15 415 88 HOH HOH . L 3 HOH D 16 416 22 HOH HOH . L 3 HOH D 17 417 97 HOH HOH . L 3 HOH D 18 418 36 HOH HOH . L 3 HOH D 19 419 91 HOH HOH . L 3 HOH D 20 420 134 HOH HOH . L 3 HOH D 21 421 115 HOH HOH . L 3 HOH D 22 422 53 HOH HOH . L 3 HOH D 23 423 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . H 2 -12.484 -11.775 3.75 1 40.28 ? PA NAI 301 D 1 HETATM 2 O O1A NAI . . . H 2 -13.386 -11.207 4.729 1 39.18 -1 O1A NAI 301 D 1 HETATM 3 O O2A NAI . . . H 2 -12.102 -10.976 2.603 1 39.05 ? O2A NAI 301 D 1 HETATM 4 O O5B NAI . . . H 2 -13.096 -13.083 3.19 1 40.77 ? O5B NAI 301 D 1 HETATM 5 C C5B NAI . . . H 2 -13.633 -14.116 3.989 1 38.79 ? C5B NAI 301 D 1 HETATM 6 C C4B NAI . . . H 2 -14.482 -15.032 3.158 1 37.97 ? C4B NAI 301 D 1 HETATM 7 O O4B NAI . . . H 2 -14.967 -16.079 3.96 1 36.6 ? O4B NAI 301 D 1 HETATM 8 C C3B NAI . . . H 2 -15.692 -14.31 2.612 1 37.39 ? C3B NAI 301 D 1 HETATM 9 O O3B NAI . . . H 2 -15.854 -14.561 1.235 1 38.36 ? O3B NAI 301 D 1 HETATM 10 C C2B NAI . . . H 2 -16.806 -15.015 3.29 1 37.14 ? C2B NAI 301 D 1 HETATM 11 O O2B NAI . . . H 2 -17.95 -14.936 2.463 1 38.73 ? O2B NAI 301 D 1 HETATM 12 C C1B NAI . . . H 2 -16.241 -16.395 3.532 1 35.18 ? C1B NAI 301 D 1 HETATM 13 N N9A NAI . . . H 2 -17.012 -17.041 4.588 1 32.01 ? N9A NAI 301 D 1 HETATM 14 C C8A NAI . . . H 2 -17.401 -16.449 5.687 1 31.18 ? C8A NAI 301 D 1 HETATM 15 N N7A NAI . . . H 2 -18.148 -17.23 6.436 1 29.73 ? N7A NAI 301 D 1 HETATM 16 C C5A NAI . . . H 2 -18.226 -18.373 5.804 1 28.95 ? C5A NAI 301 D 1 HETATM 17 C C6A NAI . . . H 2 -18.873 -19.645 6.054 1 27.54 ? C6A NAI 301 D 1 HETATM 18 N N6A NAI . . . H 2 -19.542 -19.84 7.149 1 28.18 ? N6A NAI 301 D 1 HETATM 19 N N1A NAI . . . H 2 -18.737 -20.574 5.163 1 27.26 ? N1A NAI 301 D 1 HETATM 20 C C2A NAI . . . H 2 -18.055 -20.379 4.066 1 27.21 ? C2A NAI 301 D 1 HETATM 21 N N3A NAI . . . H 2 -17.455 -19.264 3.752 1 27.91 ? N3A NAI 301 D 1 HETATM 22 C C4A NAI . . . H 2 -17.492 -18.243 4.578 1 29.4 ? C4A NAI 301 D 1 HETATM 23 O O3 NAI . . . H 2 -11.271 -12.457 4.462 1 38.77 ? O3 NAI 301 D 1 HETATM 24 P PN NAI . . . H 2 -9.753 -12.289 4.171 1 39.05 ? PN NAI 301 D 1 HETATM 25 O O1N NAI . . . H 2 -9.338 -12.535 2.801 1 38.18 -1 O1N NAI 301 D 1 HETATM 26 O O2N NAI . . . H 2 -9.469 -11.006 4.768 1 38.72 ? O2N NAI 301 D 1 HETATM 27 O O5D NAI . . . H 2 -9.518 -13.543 5.092 1 41.22 ? O5D NAI 301 D 1 HETATM 28 C C5D NAI . . . H 2 -8.948 -14.801 4.74 1 39.04 ? C5D NAI 301 D 1 HETATM 29 C C4D NAI . . . H 2 -8.21 -15.446 5.902 1 38.81 ? C4D NAI 301 D 1 HETATM 30 O O4D NAI . . . H 2 -7.142 -14.629 6.269 1 39.14 ? O4D NAI 301 D 1 HETATM 31 C C3D NAI . . . H 2 -9.044 -15.589 7.168 1 38.44 ? C3D NAI 301 D 1 HETATM 32 O O3D NAI . . . H 2 -8.979 -16.865 7.768 1 34.3 ? O3D NAI 301 D 1 HETATM 33 C C2D NAI . . . H 2 -8.445 -14.53 8.04 1 38.92 ? C2D NAI 301 D 1 HETATM 34 O O2D NAI . . . H 2 -8.767 -14.704 9.393 1 38.69 ? O2D NAI 301 D 1 HETATM 35 C C1D NAI . . . H 2 -7.007 -14.596 7.648 1 40.19 ? C1D NAI 301 D 1 HETATM 36 N N1N NAI . . . H 2 -6.25 -13.421 7.973 1 43.71 ? N1N NAI 301 D 1 HETATM 37 C C2N NAI . . . H 2 -6.544 -12.229 7.442 1 45.27 ? C2N NAI 301 D 1 HETATM 38 C C3N NAI . . . H 2 -5.776 -11.116 7.794 1 45.85 ? C3N NAI 301 D 1 HETATM 39 C C7N NAI . . . H 2 -6.044 -9.766 7.234 1 47.04 ? C7N NAI 301 D 1 HETATM 40 O O7N NAI . . . H 2 -5.421 -8.824 7.688 1 46.5 ? O7N NAI 301 D 1 HETATM 41 N N7N NAI . . . H 2 -6.949 -9.654 6.268 1 46.34 ? N7N NAI 301 D 1 HETATM 42 C C4N NAI . . . H 2 -4.74 -11.25 8.712 1 45.65 ? C4N NAI 301 D 1 HETATM 43 C C5N NAI . . . H 2 -4.459 -12.483 9.237 1 44 ? C5N NAI 301 D 1 HETATM 44 C C6N NAI . . . H 2 -5.242 -13.547 8.85 1 43.86 ? C6N NAI 301 D 1 # _model_server_stats.io_time_ms 163 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #