data_5IUA # _model_server_result.job_id fJMnHJ93tdL3qZQKrlD-8Q _model_server_result.datetime_utc '2024-11-23 04:05:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2400}' # _entry.id 5IUA # _exptl.entry_id 5IUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IUA _cell.length_a 39.56 _cell.length_b 179.979 _cell.length_c 139.924 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 B NA NA . A NA 2400 1_555 GA O HOH . A HOH 2522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc4 B NA NA . A NA 2400 1_555 GA O HOH . A HOH 2577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc5 B NA NA . A NA 2400 1_555 GA O HOH . A HOH 2593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IUA _atom_sites.fract_transf_matrix[1][1] 0.025278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2400 2400 NA NA . C 3 6DX A 1 2401 2401 6DX LUF . D 4 CLR A 1 2402 2402 CLR CLR . E 4 CLR A 1 2403 2403 CLR CLR . F 4 CLR A 1 2404 2404 CLR CLR . G 4 CLR A 1 2405 2405 CLR CLR . H 5 OLA A 1 2406 2406 OLA OLA . I 5 OLA A 1 2407 2407 OLA OLA . J 5 OLA A 1 2408 2408 OLA OLA . K 5 OLA A 1 2409 2409 OLA OLA . L 5 OLA A 1 2410 2410 OLA OLA . M 5 OLA A 1 2411 2411 OLA OLA . N 5 OLA A 1 2412 2412 OLA OLA . O 5 OLA A 1 2413 2413 OLA OLA . P 5 OLA A 1 2414 2414 OLA OLA . Q 5 OLA A 1 2415 2415 OLA OLA . R 5 OLA A 1 2416 2416 OLA OLA . S 5 OLA A 1 2417 2417 OLA OLA . T 5 OLA A 1 2418 2418 OLA OLA . U 5 OLA A 1 2419 2419 OLA OLA . V 5 OLA A 1 2420 2420 OLA OLA . W 5 OLA A 1 2421 2421 OLA OLA . X 5 OLA A 1 2422 2422 OLA OLA . Y 6 OLB A 1 2423 2423 OLB OLB . Z 6 OLB A 1 2424 2424 OLB OLB . AA 6 OLB A 1 2425 2425 OLB OLB . BA 6 OLB A 1 2426 2426 OLB OLB . CA 6 OLB A 1 2427 2427 OLB OLB . DA 6 OLB A 1 2428 2428 OLB OLB . EA 6 OLB A 1 2429 2429 OLB OLB . FA 6 OLB A 1 2430 2430 OLB OLB . GA 7 HOH A 1 2501 80 HOH HOH . GA 7 HOH A 2 2502 55 HOH HOH . GA 7 HOH A 3 2503 101 HOH HOH . GA 7 HOH A 4 2504 85 HOH HOH . GA 7 HOH A 5 2505 75 HOH HOH . GA 7 HOH A 6 2506 100 HOH HOH . GA 7 HOH A 7 2507 57 HOH HOH . GA 7 HOH A 8 2508 94 HOH HOH . GA 7 HOH A 9 2509 13 HOH HOH . GA 7 HOH A 10 2510 99 HOH HOH . GA 7 HOH A 11 2511 8 HOH HOH . GA 7 HOH A 12 2512 103 HOH HOH . GA 7 HOH A 13 2513 81 HOH HOH . GA 7 HOH A 14 2514 10 HOH HOH . GA 7 HOH A 15 2515 37 HOH HOH . GA 7 HOH A 16 2516 49 HOH HOH . GA 7 HOH A 17 2517 66 HOH HOH . GA 7 HOH A 18 2518 56 HOH HOH . GA 7 HOH A 19 2519 38 HOH HOH . GA 7 HOH A 20 2520 16 HOH HOH . GA 7 HOH A 21 2521 63 HOH HOH . GA 7 HOH A 22 2522 20 HOH HOH . GA 7 HOH A 23 2523 6 HOH HOH . GA 7 HOH A 24 2524 19 HOH HOH . GA 7 HOH A 25 2525 22 HOH HOH . GA 7 HOH A 26 2526 48 HOH HOH . GA 7 HOH A 27 2527 118 HOH HOH . GA 7 HOH A 28 2528 95 HOH HOH . GA 7 HOH A 29 2529 4 HOH HOH . GA 7 HOH A 30 2530 2 HOH HOH . GA 7 HOH A 31 2531 46 HOH HOH . GA 7 HOH A 32 2532 34 HOH HOH . GA 7 HOH A 33 2533 24 HOH HOH . GA 7 HOH A 34 2534 43 HOH HOH . GA 7 HOH A 35 2535 15 HOH HOH . GA 7 HOH A 36 2536 36 HOH HOH . GA 7 HOH A 37 2537 17 HOH HOH . GA 7 HOH A 38 2538 124 HOH HOH . GA 7 HOH A 39 2539 68 HOH HOH . GA 7 HOH A 40 2540 96 HOH HOH . GA 7 HOH A 41 2541 28 HOH HOH . GA 7 HOH A 42 2542 11 HOH HOH . GA 7 HOH A 43 2543 107 HOH HOH . GA 7 HOH A 44 2544 5 HOH HOH . GA 7 HOH A 45 2545 108 HOH HOH . GA 7 HOH A 46 2546 62 HOH HOH . GA 7 HOH A 47 2547 30 HOH HOH . GA 7 HOH A 48 2548 65 HOH HOH . GA 7 HOH A 49 2549 92 HOH HOH . GA 7 HOH A 50 2550 52 HOH HOH . GA 7 HOH A 51 2551 102 HOH HOH . GA 7 HOH A 52 2552 25 HOH HOH . GA 7 HOH A 53 2553 71 HOH HOH . GA 7 HOH A 54 2554 53 HOH HOH . GA 7 HOH A 55 2555 39 HOH HOH . GA 7 HOH A 56 2556 23 HOH HOH . GA 7 HOH A 57 2557 3 HOH HOH . GA 7 HOH A 58 2558 106 HOH HOH . GA 7 HOH A 59 2559 61 HOH HOH . GA 7 HOH A 60 2560 44 HOH HOH . GA 7 HOH A 61 2561 47 HOH HOH . GA 7 HOH A 62 2562 33 HOH HOH . GA 7 HOH A 63 2563 51 HOH HOH . GA 7 HOH A 64 2564 76 HOH HOH . GA 7 HOH A 65 2565 14 HOH HOH . GA 7 HOH A 66 2566 32 HOH HOH . GA 7 HOH A 67 2567 18 HOH HOH . GA 7 HOH A 68 2568 12 HOH HOH . GA 7 HOH A 69 2569 54 HOH HOH . GA 7 HOH A 70 2570 1 HOH HOH . GA 7 HOH A 71 2571 9 HOH HOH . GA 7 HOH A 72 2572 111 HOH HOH . GA 7 HOH A 73 2573 114 HOH HOH . GA 7 HOH A 74 2574 113 HOH HOH . GA 7 HOH A 75 2575 26 HOH HOH . GA 7 HOH A 76 2576 35 HOH HOH . GA 7 HOH A 77 2577 50 HOH HOH . GA 7 HOH A 78 2578 73 HOH HOH . GA 7 HOH A 79 2579 130 HOH HOH . GA 7 HOH A 80 2580 93 HOH HOH . GA 7 HOH A 81 2581 45 HOH HOH . GA 7 HOH A 82 2582 67 HOH HOH . GA 7 HOH A 83 2583 74 HOH HOH . GA 7 HOH A 84 2584 86 HOH HOH . GA 7 HOH A 85 2585 40 HOH HOH . GA 7 HOH A 86 2586 115 HOH HOH . GA 7 HOH A 87 2587 109 HOH HOH . GA 7 HOH A 88 2588 42 HOH HOH . GA 7 HOH A 89 2589 119 HOH HOH . GA 7 HOH A 90 2590 27 HOH HOH . GA 7 HOH A 91 2591 84 HOH HOH . GA 7 HOH A 92 2592 120 HOH HOH . GA 7 HOH A 93 2593 72 HOH HOH . GA 7 HOH A 94 2594 83 HOH HOH . GA 7 HOH A 95 2595 104 HOH HOH . GA 7 HOH A 96 2596 110 HOH HOH . GA 7 HOH A 97 2597 7 HOH HOH . GA 7 HOH A 98 2598 127 HOH HOH . GA 7 HOH A 99 2599 125 HOH HOH . GA 7 HOH A 100 2600 105 HOH HOH . GA 7 HOH A 101 2601 21 HOH HOH . GA 7 HOH A 102 2602 82 HOH HOH . GA 7 HOH A 103 2603 79 HOH HOH . GA 7 HOH A 104 2604 64 HOH HOH . GA 7 HOH A 105 2605 58 HOH HOH . GA 7 HOH A 106 2606 69 HOH HOH . GA 7 HOH A 107 2607 70 HOH HOH . GA 7 HOH A 108 2608 31 HOH HOH . GA 7 HOH A 109 2609 123 HOH HOH . GA 7 HOH A 110 2610 126 HOH HOH . GA 7 HOH A 111 2611 41 HOH HOH . GA 7 HOH A 112 2612 90 HOH HOH . GA 7 HOH A 113 2613 60 HOH HOH . GA 7 HOH A 114 2614 131 HOH HOH . GA 7 HOH A 115 2615 88 HOH HOH . GA 7 HOH A 116 2616 122 HOH HOH . GA 7 HOH A 117 2617 91 HOH HOH . GA 7 HOH A 118 2618 29 HOH HOH . GA 7 HOH A 119 2619 116 HOH HOH . GA 7 HOH A 120 2620 121 HOH HOH . GA 7 HOH A 121 2621 117 HOH HOH . GA 7 HOH A 122 2622 98 HOH HOH . GA 7 HOH A 123 2623 59 HOH HOH . GA 7 HOH A 124 2624 78 HOH HOH . GA 7 HOH A 125 2625 97 HOH HOH . GA 7 HOH A 126 2626 112 HOH HOH . GA 7 HOH A 127 2627 87 HOH HOH . GA 7 HOH A 128 2628 89 HOH HOH . GA 7 HOH A 129 2629 129 HOH HOH . GA 7 HOH A 130 2630 128 HOH HOH . GA 7 HOH A 131 2631 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.617 _atom_site.Cartn_y -8.294 _atom_site.Cartn_z 16.528 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 2400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 1 #