data_5IUA # _model_server_result.job_id s6h5-HT7dX11lBX8k0xN8g _model_server_result.datetime_utc '2024-11-14 06:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":2424}' # _entry.id 5IUA # _exptl.entry_id 5IUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IUA _cell.length_a 39.56 _cell.length_b 179.979 _cell.length_c 139.924 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N ? 6 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc3 B NA NA . A NA 2400 1_555 GA O HOH . A HOH 2522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc4 B NA NA . A NA 2400 1_555 GA O HOH . A HOH 2577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc5 B NA NA . A NA 2400 1_555 GA O HOH . A HOH 2593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 427 n n C1 O20 OLB sing 428 n n C2 C1 OLB sing 429 n n C3 C2 OLB sing 430 n n C4 C3 OLB sing 431 n n C5 C4 OLB sing 432 n n C5 C6 OLB sing 433 n n O20 C21 OLB sing 434 n n C21 C22 OLB sing 435 n n C22 C24 OLB sing 436 n n O23 C22 OLB sing 437 n n C24 O25 OLB sing 438 n n C6 C7 OLB sing 439 n n C7 C8 OLB sing 440 n n C8 C9 OLB sing 441 n n C9 C10 OLB doub 442 z n C10 C11 OLB sing 443 n n C2 H2 OLB sing 444 n n C2 H2A OLB sing 445 n n C3 H3 OLB sing 446 n n C3 H3A OLB sing 447 n n C4 H4 OLB sing 448 n n C4 H4A OLB sing 449 n n C5 H5 OLB sing 450 n n C5 H5A OLB sing 451 n n C21 H21 OLB sing 452 n n C21 H21A OLB sing 453 n n C22 H22 OLB sing 454 n n O23 HO23 OLB sing 455 n n C24 H24 OLB sing 456 n n C24 H24A OLB sing 457 n n O25 HO25 OLB sing 458 n n C6 H16 OLB sing 459 n n C6 H17 OLB sing 460 n n C7 H18 OLB sing 461 n n C7 H19 OLB sing 462 n n C8 H20 OLB sing 463 n n C8 H211 OLB sing 464 n n C9 H221 OLB sing 465 n n C10 H23 OLB sing 466 n n C11 H241 OLB sing 467 n n C11 H25 OLB sing 468 n n C11 C12 OLB sing 469 n n C12 H26 OLB sing 470 n n C12 C13 OLB sing 471 n n C12 H27 OLB sing 472 n n C13 C14 OLB sing 473 n n C13 H28 OLB sing 474 n n C13 H29 OLB sing 475 n n C14 H30 OLB sing 476 n n C14 H31 OLB sing 477 n n C14 C15 OLB sing 478 n n C15 C16 OLB sing 479 n n C15 H32 OLB sing 480 n n C15 H33 OLB sing 481 n n C16 H34 OLB sing 482 n n C16 H35 OLB sing 483 n n C16 C17 OLB sing 484 n n C17 C18 OLB sing 485 n n C17 H36 OLB sing 486 n n C17 H37 OLB sing 487 n n C18 H38 OLB sing 488 n n C18 H39 OLB sing 489 n n C18 H40 OLB sing 490 n n # _atom_sites.entry_id 5IUA _atom_sites.fract_transf_matrix[1][1] 0.025278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2400 2400 NA NA . C 3 6DX A 1 2401 2401 6DX LUF . D 4 CLR A 1 2402 2402 CLR CLR . E 4 CLR A 1 2403 2403 CLR CLR . F 4 CLR A 1 2404 2404 CLR CLR . G 4 CLR A 1 2405 2405 CLR CLR . H 5 OLA A 1 2406 2406 OLA OLA . I 5 OLA A 1 2407 2407 OLA OLA . J 5 OLA A 1 2408 2408 OLA OLA . K 5 OLA A 1 2409 2409 OLA OLA . L 5 OLA A 1 2410 2410 OLA OLA . M 5 OLA A 1 2411 2411 OLA OLA . N 5 OLA A 1 2412 2412 OLA OLA . O 5 OLA A 1 2413 2413 OLA OLA . P 5 OLA A 1 2414 2414 OLA OLA . Q 5 OLA A 1 2415 2415 OLA OLA . R 5 OLA A 1 2416 2416 OLA OLA . S 5 OLA A 1 2417 2417 OLA OLA . T 5 OLA A 1 2418 2418 OLA OLA . U 5 OLA A 1 2419 2419 OLA OLA . V 5 OLA A 1 2420 2420 OLA OLA . W 5 OLA A 1 2421 2421 OLA OLA . X 5 OLA A 1 2422 2422 OLA OLA . Y 6 OLB A 1 2423 2423 OLB OLB . Z 6 OLB A 1 2424 2424 OLB OLB . AA 6 OLB A 1 2425 2425 OLB OLB . BA 6 OLB A 1 2426 2426 OLB OLB . CA 6 OLB A 1 2427 2427 OLB OLB . DA 6 OLB A 1 2428 2428 OLB OLB . EA 6 OLB A 1 2429 2429 OLB OLB . FA 6 OLB A 1 2430 2430 OLB OLB . GA 7 HOH A 1 2501 80 HOH HOH . GA 7 HOH A 2 2502 55 HOH HOH . GA 7 HOH A 3 2503 101 HOH HOH . GA 7 HOH A 4 2504 85 HOH HOH . GA 7 HOH A 5 2505 75 HOH HOH . GA 7 HOH A 6 2506 100 HOH HOH . GA 7 HOH A 7 2507 57 HOH HOH . GA 7 HOH A 8 2508 94 HOH HOH . GA 7 HOH A 9 2509 13 HOH HOH . GA 7 HOH A 10 2510 99 HOH HOH . GA 7 HOH A 11 2511 8 HOH HOH . GA 7 HOH A 12 2512 103 HOH HOH . GA 7 HOH A 13 2513 81 HOH HOH . GA 7 HOH A 14 2514 10 HOH HOH . GA 7 HOH A 15 2515 37 HOH HOH . GA 7 HOH A 16 2516 49 HOH HOH . GA 7 HOH A 17 2517 66 HOH HOH . GA 7 HOH A 18 2518 56 HOH HOH . GA 7 HOH A 19 2519 38 HOH HOH . GA 7 HOH A 20 2520 16 HOH HOH . GA 7 HOH A 21 2521 63 HOH HOH . GA 7 HOH A 22 2522 20 HOH HOH . GA 7 HOH A 23 2523 6 HOH HOH . GA 7 HOH A 24 2524 19 HOH HOH . GA 7 HOH A 25 2525 22 HOH HOH . GA 7 HOH A 26 2526 48 HOH HOH . GA 7 HOH A 27 2527 118 HOH HOH . GA 7 HOH A 28 2528 95 HOH HOH . GA 7 HOH A 29 2529 4 HOH HOH . GA 7 HOH A 30 2530 2 HOH HOH . GA 7 HOH A 31 2531 46 HOH HOH . GA 7 HOH A 32 2532 34 HOH HOH . GA 7 HOH A 33 2533 24 HOH HOH . GA 7 HOH A 34 2534 43 HOH HOH . GA 7 HOH A 35 2535 15 HOH HOH . GA 7 HOH A 36 2536 36 HOH HOH . GA 7 HOH A 37 2537 17 HOH HOH . GA 7 HOH A 38 2538 124 HOH HOH . GA 7 HOH A 39 2539 68 HOH HOH . GA 7 HOH A 40 2540 96 HOH HOH . GA 7 HOH A 41 2541 28 HOH HOH . GA 7 HOH A 42 2542 11 HOH HOH . GA 7 HOH A 43 2543 107 HOH HOH . GA 7 HOH A 44 2544 5 HOH HOH . GA 7 HOH A 45 2545 108 HOH HOH . GA 7 HOH A 46 2546 62 HOH HOH . GA 7 HOH A 47 2547 30 HOH HOH . GA 7 HOH A 48 2548 65 HOH HOH . GA 7 HOH A 49 2549 92 HOH HOH . GA 7 HOH A 50 2550 52 HOH HOH . GA 7 HOH A 51 2551 102 HOH HOH . GA 7 HOH A 52 2552 25 HOH HOH . GA 7 HOH A 53 2553 71 HOH HOH . GA 7 HOH A 54 2554 53 HOH HOH . GA 7 HOH A 55 2555 39 HOH HOH . GA 7 HOH A 56 2556 23 HOH HOH . GA 7 HOH A 57 2557 3 HOH HOH . GA 7 HOH A 58 2558 106 HOH HOH . GA 7 HOH A 59 2559 61 HOH HOH . GA 7 HOH A 60 2560 44 HOH HOH . GA 7 HOH A 61 2561 47 HOH HOH . GA 7 HOH A 62 2562 33 HOH HOH . GA 7 HOH A 63 2563 51 HOH HOH . GA 7 HOH A 64 2564 76 HOH HOH . GA 7 HOH A 65 2565 14 HOH HOH . GA 7 HOH A 66 2566 32 HOH HOH . GA 7 HOH A 67 2567 18 HOH HOH . GA 7 HOH A 68 2568 12 HOH HOH . GA 7 HOH A 69 2569 54 HOH HOH . GA 7 HOH A 70 2570 1 HOH HOH . GA 7 HOH A 71 2571 9 HOH HOH . GA 7 HOH A 72 2572 111 HOH HOH . GA 7 HOH A 73 2573 114 HOH HOH . GA 7 HOH A 74 2574 113 HOH HOH . GA 7 HOH A 75 2575 26 HOH HOH . GA 7 HOH A 76 2576 35 HOH HOH . GA 7 HOH A 77 2577 50 HOH HOH . GA 7 HOH A 78 2578 73 HOH HOH . GA 7 HOH A 79 2579 130 HOH HOH . GA 7 HOH A 80 2580 93 HOH HOH . GA 7 HOH A 81 2581 45 HOH HOH . GA 7 HOH A 82 2582 67 HOH HOH . GA 7 HOH A 83 2583 74 HOH HOH . GA 7 HOH A 84 2584 86 HOH HOH . GA 7 HOH A 85 2585 40 HOH HOH . GA 7 HOH A 86 2586 115 HOH HOH . GA 7 HOH A 87 2587 109 HOH HOH . GA 7 HOH A 88 2588 42 HOH HOH . GA 7 HOH A 89 2589 119 HOH HOH . GA 7 HOH A 90 2590 27 HOH HOH . GA 7 HOH A 91 2591 84 HOH HOH . GA 7 HOH A 92 2592 120 HOH HOH . GA 7 HOH A 93 2593 72 HOH HOH . GA 7 HOH A 94 2594 83 HOH HOH . GA 7 HOH A 95 2595 104 HOH HOH . GA 7 HOH A 96 2596 110 HOH HOH . GA 7 HOH A 97 2597 7 HOH HOH . GA 7 HOH A 98 2598 127 HOH HOH . GA 7 HOH A 99 2599 125 HOH HOH . GA 7 HOH A 100 2600 105 HOH HOH . GA 7 HOH A 101 2601 21 HOH HOH . GA 7 HOH A 102 2602 82 HOH HOH . GA 7 HOH A 103 2603 79 HOH HOH . GA 7 HOH A 104 2604 64 HOH HOH . GA 7 HOH A 105 2605 58 HOH HOH . GA 7 HOH A 106 2606 69 HOH HOH . GA 7 HOH A 107 2607 70 HOH HOH . GA 7 HOH A 108 2608 31 HOH HOH . GA 7 HOH A 109 2609 123 HOH HOH . GA 7 HOH A 110 2610 126 HOH HOH . GA 7 HOH A 111 2611 41 HOH HOH . GA 7 HOH A 112 2612 90 HOH HOH . GA 7 HOH A 113 2613 60 HOH HOH . GA 7 HOH A 114 2614 131 HOH HOH . GA 7 HOH A 115 2615 88 HOH HOH . GA 7 HOH A 116 2616 122 HOH HOH . GA 7 HOH A 117 2617 91 HOH HOH . GA 7 HOH A 118 2618 29 HOH HOH . GA 7 HOH A 119 2619 116 HOH HOH . GA 7 HOH A 120 2620 121 HOH HOH . GA 7 HOH A 121 2621 117 HOH HOH . GA 7 HOH A 122 2622 98 HOH HOH . GA 7 HOH A 123 2623 59 HOH HOH . GA 7 HOH A 124 2624 78 HOH HOH . GA 7 HOH A 125 2625 97 HOH HOH . GA 7 HOH A 126 2626 112 HOH HOH . GA 7 HOH A 127 2627 87 HOH HOH . GA 7 HOH A 128 2628 89 HOH HOH . GA 7 HOH A 129 2629 129 HOH HOH . GA 7 HOH A 130 2630 128 HOH HOH . GA 7 HOH A 131 2631 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . Z 6 -2.39 8.834 25.65 1 42.32 ? C1 OLB 2424 A 1 HETATM 2 C C2 OLB . . . Z 6 -2.277 7.425 26.218 1 40.88 ? C2 OLB 2424 A 1 HETATM 3 C C3 OLB . . . Z 6 -3.294 6.488 25.572 1 42.84 ? C3 OLB 2424 A 1 HETATM 4 C C4 OLB . . . Z 6 -2.624 5.383 24.763 1 46.08 ? C4 OLB 2424 A 1 HETATM 5 C C5 OLB . . . Z 6 -3.544 4.185 24.54 1 47.16 ? C5 OLB 2424 A 1 HETATM 6 O O19 OLB . . . Z 6 -2.721 8.983 24.525 1 44.57 ? O19 OLB 2424 A 1 HETATM 7 O O20 OLB . . . Z 6 -2.11 9.944 26.45 1 46.32 ? O20 OLB 2424 A 1 HETATM 8 C C21 OLB . . . Z 6 -2.385 11.176 25.846 1 46.33 ? C21 OLB 2424 A 1 HETATM 9 C C22 OLB . . . Z 6 -1.805 12.265 26.745 1 49.24 ? C22 OLB 2424 A 1 HETATM 10 O O23 OLB . . . Z 6 -0.44 11.999 26.899 1 53.14 ? O23 OLB 2424 A 1 HETATM 11 C C24 OLB . . . Z 6 -1.939 13.67 26.162 1 50.95 ? C24 OLB 2424 A 1 HETATM 12 O O25 OLB . . . Z 6 -1.669 13.605 24.79 1 53.15 ? O25 OLB 2424 A 1 HETATM 13 C C6 OLB . . . Z 6 -3.023 2.963 25.289 1 49.23 ? C6 OLB 2424 A 1 HETATM 14 C C7 OLB . . . Z 6 -3.647 1.649 24.829 1 50.62 ? C7 OLB 2424 A 1 HETATM 15 C C8 OLB . . . Z 6 -2.885 0.467 25.421 1 54.43 ? C8 OLB 2424 A 1 HETATM 16 C C9 OLB . . . Z 6 -3.618 -0.84 25.136 1 57.95 ? C9 OLB 2424 A 1 HETATM 17 C C10 OLB . . . Z 6 -2.914 -1.936 24.941 1 62.13 ? C10 OLB 2424 A 1 HETATM 18 C C11 OLB . . . Z 6 -3.621 -3.257 24.658 1 63.49 ? C11 OLB 2424 A 1 HETATM 19 C C12 OLB . . . Z 6 -4.324 -3.163 23.308 1 64.36 ? C12 OLB 2424 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #