data_5IUB # _model_server_result.job_id tLpHqxWHYjCpajf-_dyWMw _model_server_result.datetime_utc '2024-11-23 20:15:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2404}' # _entry.id 5IUB # _exptl.entry_id 5IUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IUB _cell.length_a 39.276 _cell.length_b 179.551 _cell.length_c 139.561 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc3 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc5 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 127 n n C1 C10 CLR sing 128 n n C1 H11 CLR sing 129 n n C1 H12 CLR sing 130 n n C2 C3 CLR sing 131 n n C2 H21 CLR sing 132 n n C2 H22 CLR sing 133 n n C3 C4 CLR sing 134 n n C3 O1 CLR sing 135 n n C3 H3 CLR sing 136 n n C4 C5 CLR sing 137 n n C4 H41 CLR sing 138 n n C4 H42 CLR sing 139 n n C5 C6 CLR doub 140 n n C5 C10 CLR sing 141 n n C6 C7 CLR sing 142 n n C6 H6 CLR sing 143 n n C7 C8 CLR sing 144 n n C7 H71 CLR sing 145 n n C7 H72 CLR sing 146 n n C8 C9 CLR sing 147 n n C8 C14 CLR sing 148 n n C8 H8 CLR sing 149 n n C9 C10 CLR sing 150 n n C9 C11 CLR sing 151 n n C9 H9 CLR sing 152 n n C10 C19 CLR sing 153 n n C11 C12 CLR sing 154 n n C11 H111 CLR sing 155 n n C11 H112 CLR sing 156 n n C12 C13 CLR sing 157 n n C12 H121 CLR sing 158 n n C12 H122 CLR sing 159 n n C13 C14 CLR sing 160 n n C13 C17 CLR sing 161 n n C13 C18 CLR sing 162 n n C14 C15 CLR sing 163 n n C14 H14 CLR sing 164 n n C15 C16 CLR sing 165 n n C15 H151 CLR sing 166 n n C15 H152 CLR sing 167 n n C16 C17 CLR sing 168 n n C16 H161 CLR sing 169 n n C16 H162 CLR sing 170 n n C17 C20 CLR sing 171 n n C17 H17 CLR sing 172 n n C18 H181 CLR sing 173 n n C18 H182 CLR sing 174 n n C18 H183 CLR sing 175 n n C19 H191 CLR sing 176 n n C19 H192 CLR sing 177 n n C19 H193 CLR sing 178 n n C20 C21 CLR sing 179 n n C20 C22 CLR sing 180 n n C20 H20 CLR sing 181 n n C21 H211 CLR sing 182 n n C21 H212 CLR sing 183 n n C21 H213 CLR sing 184 n n C22 C23 CLR sing 185 n n C22 H221 CLR sing 186 n n C22 H222 CLR sing 187 n n C23 C24 CLR sing 188 n n C23 H231 CLR sing 189 n n C23 H232 CLR sing 190 n n C24 C25 CLR sing 191 n n C24 H241 CLR sing 192 n n C24 H242 CLR sing 193 n n C25 C26 CLR sing 194 n n C25 C27 CLR sing 195 n n C25 H25 CLR sing 196 n n C26 H261 CLR sing 197 n n C26 H262 CLR sing 198 n n C26 H263 CLR sing 199 n n C27 H271 CLR sing 200 n n C27 H272 CLR sing 201 n n C27 H273 CLR sing 202 n n O1 H1 CLR sing 203 n n # _atom_sites.entry_id 5IUB _atom_sites.fract_transf_matrix[1][1] 0.025461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2400 2400 NA NA . C 3 6DV A 1 2401 2401 6DV LUF . D 4 CLR A 1 2402 2402 CLR CLR . E 4 CLR A 1 2403 2403 CLR CLR . F 4 CLR A 1 2404 2404 CLR CLR . G 5 OLA A 1 2405 2405 OLA OLA . H 5 OLA A 1 2406 2406 OLA OLA . I 5 OLA A 1 2407 2407 OLA OLA . J 5 OLA A 1 2408 2408 OLA OLA . K 5 OLA A 1 2409 2409 OLA OLA . L 5 OLA A 1 2410 2410 OLA OLA . M 5 OLA A 1 2411 2411 OLA OLA . N 5 OLA A 1 2412 2412 OLA OLA . O 5 OLA A 1 2413 2413 OLA OLA . P 5 OLA A 1 2414 2414 OLA OLA . Q 5 OLA A 1 2415 2415 OLA OLA . R 5 OLA A 1 2416 2416 OLA OLA . S 5 OLA A 1 2417 2417 OLA OLA . T 5 OLA A 1 2418 2418 OLA OLA . U 5 OLA A 1 2419 2419 OLA OLA . V 5 OLA A 1 2420 2420 OLA OLA . W 6 OLB A 1 2421 2421 OLB OLB . X 6 OLB A 1 2422 2422 OLB OLB . Y 6 OLB A 1 2423 2423 OLB OLB . Z 6 OLB A 1 2424 2424 OLB OLB . AA 6 OLB A 1 2425 2425 OLB OLB . BA 6 OLB A 1 2426 2426 OLB OLB . CA 6 OLB A 1 2427 2427 OLB OLB . DA 7 OLC A 1 2428 2428 OLC OLC . EA 7 OLC A 1 2429 2429 OLC OLC . FA 8 HOH A 1 2501 74 HOH HOH . FA 8 HOH A 2 2502 35 HOH HOH . FA 8 HOH A 3 2503 81 HOH HOH . FA 8 HOH A 4 2504 98 HOH HOH . FA 8 HOH A 5 2505 65 HOH HOH . FA 8 HOH A 6 2506 95 HOH HOH . FA 8 HOH A 7 2507 46 HOH HOH . FA 8 HOH A 8 2508 88 HOH HOH . FA 8 HOH A 9 2509 82 HOH HOH . FA 8 HOH A 10 2510 97 HOH HOH . FA 8 HOH A 11 2511 32 HOH HOH . FA 8 HOH A 12 2512 33 HOH HOH . FA 8 HOH A 13 2513 76 HOH HOH . FA 8 HOH A 14 2514 94 HOH HOH . FA 8 HOH A 15 2515 21 HOH HOH . FA 8 HOH A 16 2516 18 HOH HOH . FA 8 HOH A 17 2517 24 HOH HOH . FA 8 HOH A 18 2518 4 HOH HOH . FA 8 HOH A 19 2519 13 HOH HOH . FA 8 HOH A 20 2520 28 HOH HOH . FA 8 HOH A 21 2521 75 HOH HOH . FA 8 HOH A 22 2522 25 HOH HOH . FA 8 HOH A 23 2523 64 HOH HOH . FA 8 HOH A 24 2524 31 HOH HOH . FA 8 HOH A 25 2525 87 HOH HOH . FA 8 HOH A 26 2526 45 HOH HOH . FA 8 HOH A 27 2527 29 HOH HOH . FA 8 HOH A 28 2528 34 HOH HOH . FA 8 HOH A 29 2529 58 HOH HOH . FA 8 HOH A 30 2530 70 HOH HOH . FA 8 HOH A 31 2531 5 HOH HOH . FA 8 HOH A 32 2532 38 HOH HOH . FA 8 HOH A 33 2533 85 HOH HOH . FA 8 HOH A 34 2534 20 HOH HOH . FA 8 HOH A 35 2535 15 HOH HOH . FA 8 HOH A 36 2536 68 HOH HOH . FA 8 HOH A 37 2537 7 HOH HOH . FA 8 HOH A 38 2538 16 HOH HOH . FA 8 HOH A 39 2539 6 HOH HOH . FA 8 HOH A 40 2540 17 HOH HOH . FA 8 HOH A 41 2541 11 HOH HOH . FA 8 HOH A 42 2542 8 HOH HOH . FA 8 HOH A 43 2543 40 HOH HOH . FA 8 HOH A 44 2544 19 HOH HOH . FA 8 HOH A 45 2545 52 HOH HOH . FA 8 HOH A 46 2546 71 HOH HOH . FA 8 HOH A 47 2547 1 HOH HOH . FA 8 HOH A 48 2548 2 HOH HOH . FA 8 HOH A 49 2549 41 HOH HOH . FA 8 HOH A 50 2550 39 HOH HOH . FA 8 HOH A 51 2551 63 HOH HOH . FA 8 HOH A 52 2552 59 HOH HOH . FA 8 HOH A 53 2553 50 HOH HOH . FA 8 HOH A 54 2554 54 HOH HOH . FA 8 HOH A 55 2555 69 HOH HOH . FA 8 HOH A 56 2556 3 HOH HOH . FA 8 HOH A 57 2557 92 HOH HOH . FA 8 HOH A 58 2558 61 HOH HOH . FA 8 HOH A 59 2559 60 HOH HOH . FA 8 HOH A 60 2560 42 HOH HOH . FA 8 HOH A 61 2561 93 HOH HOH . FA 8 HOH A 62 2562 56 HOH HOH . FA 8 HOH A 63 2563 78 HOH HOH . FA 8 HOH A 64 2564 30 HOH HOH . FA 8 HOH A 65 2565 9 HOH HOH . FA 8 HOH A 66 2566 80 HOH HOH . FA 8 HOH A 67 2567 102 HOH HOH . FA 8 HOH A 68 2568 14 HOH HOH . FA 8 HOH A 69 2569 10 HOH HOH . FA 8 HOH A 70 2570 79 HOH HOH . FA 8 HOH A 71 2571 36 HOH HOH . FA 8 HOH A 72 2572 72 HOH HOH . FA 8 HOH A 73 2573 27 HOH HOH . FA 8 HOH A 74 2574 89 HOH HOH . FA 8 HOH A 75 2575 53 HOH HOH . FA 8 HOH A 76 2576 99 HOH HOH . FA 8 HOH A 77 2577 47 HOH HOH . FA 8 HOH A 78 2578 55 HOH HOH . FA 8 HOH A 79 2579 48 HOH HOH . FA 8 HOH A 80 2580 86 HOH HOH . FA 8 HOH A 81 2581 84 HOH HOH . FA 8 HOH A 82 2582 66 HOH HOH . FA 8 HOH A 83 2583 100 HOH HOH . FA 8 HOH A 84 2584 62 HOH HOH . FA 8 HOH A 85 2585 26 HOH HOH . FA 8 HOH A 86 2586 49 HOH HOH . FA 8 HOH A 87 2587 22 HOH HOH . FA 8 HOH A 88 2588 12 HOH HOH . FA 8 HOH A 89 2589 77 HOH HOH . FA 8 HOH A 90 2590 23 HOH HOH . FA 8 HOH A 91 2591 57 HOH HOH . FA 8 HOH A 92 2592 101 HOH HOH . FA 8 HOH A 93 2593 73 HOH HOH . FA 8 HOH A 94 2594 51 HOH HOH . FA 8 HOH A 95 2595 67 HOH HOH . FA 8 HOH A 96 2596 90 HOH HOH . FA 8 HOH A 97 2597 37 HOH HOH . FA 8 HOH A 98 2598 103 HOH HOH . FA 8 HOH A 99 2599 96 HOH HOH . FA 8 HOH A 100 2600 43 HOH HOH . FA 8 HOH A 101 2601 91 HOH HOH . FA 8 HOH A 102 2602 44 HOH HOH . FA 8 HOH A 103 2603 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 4 -3.073 8.159 21.248 1 21.75 ? C1 CLR 2404 A 1 HETATM 2 C C2 CLR . . . F 4 -2.794 9.677 21.183 1 24.02 ? C2 CLR 2404 A 1 HETATM 3 C C3 CLR . . . F 4 -1.848 10.041 20.069 1 22.4 ? C3 CLR 2404 A 1 HETATM 4 C C4 CLR . . . F 4 -2.301 9.456 18.719 1 25.17 ? C4 CLR 2404 A 1 HETATM 5 C C5 CLR . . . F 4 -2.623 7.986 18.809 1 28.28 ? C5 CLR 2404 A 1 HETATM 6 C C6 CLR . . . F 4 -2.084 7.149 17.9 1 24.73 ? C6 CLR 2404 A 1 HETATM 7 C C7 CLR . . . F 4 -2.417 5.671 17.781 1 28.67 ? C7 CLR 2404 A 1 HETATM 8 C C8 CLR . . . F 4 -3.588 5.283 18.677 1 26.8 ? C8 CLR 2404 A 1 HETATM 9 C C9 CLR . . . F 4 -3.505 5.999 20.031 1 21.37 ? C9 CLR 2404 A 1 HETATM 10 C C10 CLR . . . F 4 -3.536 7.53 19.927 1 22.53 ? C10 CLR 2404 A 1 HETATM 11 C C11 CLR . . . F 4 -4.559 5.445 20.993 1 24.79 ? C11 CLR 2404 A 1 HETATM 12 C C12 CLR . . . F 4 -4.624 3.914 21.055 1 21.58 ? C12 CLR 2404 A 1 HETATM 13 C C13 CLR . . . F 4 -4.708 3.22 19.723 1 26.05 ? C13 CLR 2404 A 1 HETATM 14 C C14 CLR . . . F 4 -3.553 3.786 18.908 1 26.54 ? C14 CLR 2404 A 1 HETATM 15 C C15 CLR . . . F 4 -3.504 2.904 17.664 1 28.72 ? C15 CLR 2404 A 1 HETATM 16 C C16 CLR . . . F 4 -3.924 1.539 18.202 1 31.26 ? C16 CLR 2404 A 1 HETATM 17 C C17 CLR . . . F 4 -4.415 1.711 19.641 1 32.36 ? C17 CLR 2404 A 1 HETATM 18 C C18 CLR . . . F 4 -6.096 3.488 19.071 1 16.09 ? C18 CLR 2404 A 1 HETATM 19 C C19 CLR . . . F 4 -4.972 8.033 19.605 1 16.03 ? C19 CLR 2404 A 1 HETATM 20 C C20 CLR . . . F 4 -5.49 0.659 19.958 1 25.99 ? C20 CLR 2404 A 1 HETATM 21 C C21 CLR . . . F 4 -5.964 0.678 21.411 1 22.23 ? C21 CLR 2404 A 1 HETATM 22 C C22 CLR . . . F 4 -4.943 -0.749 19.648 1 36.99 ? C22 CLR 2404 A 1 HETATM 23 C C23 CLR . . . F 4 -5.959 -1.892 19.784 1 41.87 ? C23 CLR 2404 A 1 HETATM 24 C C24 CLR . . . F 4 -5.257 -3.226 19.524 1 49.44 ? C24 CLR 2404 A 1 HETATM 25 C C25 CLR . . . F 4 -5.841 -4.009 18.341 1 57.67 ? C25 CLR 2404 A 1 HETATM 26 C C26 CLR . . . F 4 -7.206 -4.587 18.699 1 67.49 ? C26 CLR 2404 A 1 HETATM 27 C C27 CLR . . . F 4 -5.955 -3.158 17.077 1 59.55 ? C27 CLR 2404 A 1 HETATM 28 O O1 CLR . . . F 4 -1.781 11.47 19.939 1 24.01 ? O1 CLR 2404 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #