data_5IUB
#
_model_server_result.job_id            i4y3RinAQsAKq26rspqfGw 
_model_server_result.datetime_utc      '2024-11-21 14:42:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iub 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":2424}' 
#
_entry.id    5IUB 
#
_exptl.entry_id    5IUB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5IUB 
_cell.length_a            39.276 
_cell.length_b            179.551 
_cell.length_c            139.561 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IUB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
? 6 BA N N 
? 6 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc2 A OG SER 100 A SER 91 1_555 B NA NA . A NA 2400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc3 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc4 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc5 B NA NA . A NA 2400 1_555 FA O HOH . A HOH 2564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 424 n n 
C1 O20 OLB sing 425 n n 
C2 C1 OLB sing 426 n n 
C3 C2 OLB sing 427 n n 
C4 C3 OLB sing 428 n n 
C5 C4 OLB sing 429 n n 
C5 C6 OLB sing 430 n n 
O20 C21 OLB sing 431 n n 
C21 C22 OLB sing 432 n n 
C22 C24 OLB sing 433 n n 
O23 C22 OLB sing 434 n n 
C24 O25 OLB sing 435 n n 
C6 C7 OLB sing 436 n n 
C7 C8 OLB sing 437 n n 
C8 C9 OLB sing 438 n n 
C9 C10 OLB doub 439 z n 
C10 C11 OLB sing 440 n n 
C2 H2 OLB sing 441 n n 
C2 H2A OLB sing 442 n n 
C3 H3 OLB sing 443 n n 
C3 H3A OLB sing 444 n n 
C4 H4 OLB sing 445 n n 
C4 H4A OLB sing 446 n n 
C5 H5 OLB sing 447 n n 
C5 H5A OLB sing 448 n n 
C21 H21 OLB sing 449 n n 
C21 H21A OLB sing 450 n n 
C22 H22 OLB sing 451 n n 
O23 HO23 OLB sing 452 n n 
C24 H24 OLB sing 453 n n 
C24 H24A OLB sing 454 n n 
O25 HO25 OLB sing 455 n n 
C6 H16 OLB sing 456 n n 
C6 H17 OLB sing 457 n n 
C7 H18 OLB sing 458 n n 
C7 H19 OLB sing 459 n n 
C8 H20 OLB sing 460 n n 
C8 H211 OLB sing 461 n n 
C9 H221 OLB sing 462 n n 
C10 H23 OLB sing 463 n n 
C11 H241 OLB sing 464 n n 
C11 H25 OLB sing 465 n n 
C11 C12 OLB sing 466 n n 
C12 H26 OLB sing 467 n n 
C12 C13 OLB sing 468 n n 
C12 H27 OLB sing 469 n n 
C13 C14 OLB sing 470 n n 
C13 H28 OLB sing 471 n n 
C13 H29 OLB sing 472 n n 
C14 H30 OLB sing 473 n n 
C14 H31 OLB sing 474 n n 
C14 C15 OLB sing 475 n n 
C15 C16 OLB sing 476 n n 
C15 H32 OLB sing 477 n n 
C15 H33 OLB sing 478 n n 
C16 H34 OLB sing 479 n n 
C16 H35 OLB sing 480 n n 
C16 C17 OLB sing 481 n n 
C17 C18 OLB sing 482 n n 
C17 H36 OLB sing 483 n n 
C17 H37 OLB sing 484 n n 
C18 H38 OLB sing 485 n n 
C18 H39 OLB sing 486 n n 
C18 H40 OLB sing 487 n n 
#
_atom_sites.entry_id                     5IUB 
_atom_sites.fract_transf_matrix[1][1]    0.025461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005569 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007165 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 2400 2400 NA NA . 
C 3 6DV A 1 2401 2401 6DV LUF . 
D 4 CLR A 1 2402 2402 CLR CLR . 
E 4 CLR A 1 2403 2403 CLR CLR . 
F 4 CLR A 1 2404 2404 CLR CLR . 
G 5 OLA A 1 2405 2405 OLA OLA . 
H 5 OLA A 1 2406 2406 OLA OLA . 
I 5 OLA A 1 2407 2407 OLA OLA . 
J 5 OLA A 1 2408 2408 OLA OLA . 
K 5 OLA A 1 2409 2409 OLA OLA . 
L 5 OLA A 1 2410 2410 OLA OLA . 
M 5 OLA A 1 2411 2411 OLA OLA . 
N 5 OLA A 1 2412 2412 OLA OLA . 
O 5 OLA A 1 2413 2413 OLA OLA . 
P 5 OLA A 1 2414 2414 OLA OLA . 
Q 5 OLA A 1 2415 2415 OLA OLA . 
R 5 OLA A 1 2416 2416 OLA OLA . 
S 5 OLA A 1 2417 2417 OLA OLA . 
T 5 OLA A 1 2418 2418 OLA OLA . 
U 5 OLA A 1 2419 2419 OLA OLA . 
V 5 OLA A 1 2420 2420 OLA OLA . 
W 6 OLB A 1 2421 2421 OLB OLB . 
X 6 OLB A 1 2422 2422 OLB OLB . 
Y 6 OLB A 1 2423 2423 OLB OLB . 
Z 6 OLB A 1 2424 2424 OLB OLB . 
AA 6 OLB A 1 2425 2425 OLB OLB . 
BA 6 OLB A 1 2426 2426 OLB OLB . 
CA 6 OLB A 1 2427 2427 OLB OLB . 
DA 7 OLC A 1 2428 2428 OLC OLC . 
EA 7 OLC A 1 2429 2429 OLC OLC . 
FA 8 HOH A 1 2501 74 HOH HOH . 
FA 8 HOH A 2 2502 35 HOH HOH . 
FA 8 HOH A 3 2503 81 HOH HOH . 
FA 8 HOH A 4 2504 98 HOH HOH . 
FA 8 HOH A 5 2505 65 HOH HOH . 
FA 8 HOH A 6 2506 95 HOH HOH . 
FA 8 HOH A 7 2507 46 HOH HOH . 
FA 8 HOH A 8 2508 88 HOH HOH . 
FA 8 HOH A 9 2509 82 HOH HOH . 
FA 8 HOH A 10 2510 97 HOH HOH . 
FA 8 HOH A 11 2511 32 HOH HOH . 
FA 8 HOH A 12 2512 33 HOH HOH . 
FA 8 HOH A 13 2513 76 HOH HOH . 
FA 8 HOH A 14 2514 94 HOH HOH . 
FA 8 HOH A 15 2515 21 HOH HOH . 
FA 8 HOH A 16 2516 18 HOH HOH . 
FA 8 HOH A 17 2517 24 HOH HOH . 
FA 8 HOH A 18 2518 4 HOH HOH . 
FA 8 HOH A 19 2519 13 HOH HOH . 
FA 8 HOH A 20 2520 28 HOH HOH . 
FA 8 HOH A 21 2521 75 HOH HOH . 
FA 8 HOH A 22 2522 25 HOH HOH . 
FA 8 HOH A 23 2523 64 HOH HOH . 
FA 8 HOH A 24 2524 31 HOH HOH . 
FA 8 HOH A 25 2525 87 HOH HOH . 
FA 8 HOH A 26 2526 45 HOH HOH . 
FA 8 HOH A 27 2527 29 HOH HOH . 
FA 8 HOH A 28 2528 34 HOH HOH . 
FA 8 HOH A 29 2529 58 HOH HOH . 
FA 8 HOH A 30 2530 70 HOH HOH . 
FA 8 HOH A 31 2531 5 HOH HOH . 
FA 8 HOH A 32 2532 38 HOH HOH . 
FA 8 HOH A 33 2533 85 HOH HOH . 
FA 8 HOH A 34 2534 20 HOH HOH . 
FA 8 HOH A 35 2535 15 HOH HOH . 
FA 8 HOH A 36 2536 68 HOH HOH . 
FA 8 HOH A 37 2537 7 HOH HOH . 
FA 8 HOH A 38 2538 16 HOH HOH . 
FA 8 HOH A 39 2539 6 HOH HOH . 
FA 8 HOH A 40 2540 17 HOH HOH . 
FA 8 HOH A 41 2541 11 HOH HOH . 
FA 8 HOH A 42 2542 8 HOH HOH . 
FA 8 HOH A 43 2543 40 HOH HOH . 
FA 8 HOH A 44 2544 19 HOH HOH . 
FA 8 HOH A 45 2545 52 HOH HOH . 
FA 8 HOH A 46 2546 71 HOH HOH . 
FA 8 HOH A 47 2547 1 HOH HOH . 
FA 8 HOH A 48 2548 2 HOH HOH . 
FA 8 HOH A 49 2549 41 HOH HOH . 
FA 8 HOH A 50 2550 39 HOH HOH . 
FA 8 HOH A 51 2551 63 HOH HOH . 
FA 8 HOH A 52 2552 59 HOH HOH . 
FA 8 HOH A 53 2553 50 HOH HOH . 
FA 8 HOH A 54 2554 54 HOH HOH . 
FA 8 HOH A 55 2555 69 HOH HOH . 
FA 8 HOH A 56 2556 3 HOH HOH . 
FA 8 HOH A 57 2557 92 HOH HOH . 
FA 8 HOH A 58 2558 61 HOH HOH . 
FA 8 HOH A 59 2559 60 HOH HOH . 
FA 8 HOH A 60 2560 42 HOH HOH . 
FA 8 HOH A 61 2561 93 HOH HOH . 
FA 8 HOH A 62 2562 56 HOH HOH . 
FA 8 HOH A 63 2563 78 HOH HOH . 
FA 8 HOH A 64 2564 30 HOH HOH . 
FA 8 HOH A 65 2565 9 HOH HOH . 
FA 8 HOH A 66 2566 80 HOH HOH . 
FA 8 HOH A 67 2567 102 HOH HOH . 
FA 8 HOH A 68 2568 14 HOH HOH . 
FA 8 HOH A 69 2569 10 HOH HOH . 
FA 8 HOH A 70 2570 79 HOH HOH . 
FA 8 HOH A 71 2571 36 HOH HOH . 
FA 8 HOH A 72 2572 72 HOH HOH . 
FA 8 HOH A 73 2573 27 HOH HOH . 
FA 8 HOH A 74 2574 89 HOH HOH . 
FA 8 HOH A 75 2575 53 HOH HOH . 
FA 8 HOH A 76 2576 99 HOH HOH . 
FA 8 HOH A 77 2577 47 HOH HOH . 
FA 8 HOH A 78 2578 55 HOH HOH . 
FA 8 HOH A 79 2579 48 HOH HOH . 
FA 8 HOH A 80 2580 86 HOH HOH . 
FA 8 HOH A 81 2581 84 HOH HOH . 
FA 8 HOH A 82 2582 66 HOH HOH . 
FA 8 HOH A 83 2583 100 HOH HOH . 
FA 8 HOH A 84 2584 62 HOH HOH . 
FA 8 HOH A 85 2585 26 HOH HOH . 
FA 8 HOH A 86 2586 49 HOH HOH . 
FA 8 HOH A 87 2587 22 HOH HOH . 
FA 8 HOH A 88 2588 12 HOH HOH . 
FA 8 HOH A 89 2589 77 HOH HOH . 
FA 8 HOH A 90 2590 23 HOH HOH . 
FA 8 HOH A 91 2591 57 HOH HOH . 
FA 8 HOH A 92 2592 101 HOH HOH . 
FA 8 HOH A 93 2593 73 HOH HOH . 
FA 8 HOH A 94 2594 51 HOH HOH . 
FA 8 HOH A 95 2595 67 HOH HOH . 
FA 8 HOH A 96 2596 90 HOH HOH . 
FA 8 HOH A 97 2597 37 HOH HOH . 
FA 8 HOH A 98 2598 103 HOH HOH . 
FA 8 HOH A 99 2599 96 HOH HOH . 
FA 8 HOH A 100 2600 43 HOH HOH . 
FA 8 HOH A 101 2601 91 HOH HOH . 
FA 8 HOH A 102 2602 44 HOH HOH . 
FA 8 HOH A 103 2603 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OLB . . . Z 6 -38.189 11.31 16.982 1 57.05 ? C1 OLB 2424 A 1 
HETATM 2 C C2 OLB . . . Z 6 -37.761 9.977 17.594 1 41.84 ? C2 OLB 2424 A 1 
HETATM 3 C C3 OLB . . . Z 6 -37.917 8.841 16.588 1 35.85 ? C3 OLB 2424 A 1 
HETATM 4 C C4 OLB . . . Z 6 -37.367 7.505 17.08 1 34.26 ? C4 OLB 2424 A 1 
HETATM 5 C C5 OLB . . . Z 6 -37.328 6.485 15.945 1 42.53 ? C5 OLB 2424 A 1 
HETATM 6 O O19 OLB . . . Z 6 -38.202 11.434 15.803 1 72.1 ? O19 OLB 2424 A 1 
HETATM 7 O O20 OLB . . . Z 6 -38.575 12.381 17.798 1 48.99 ? O20 OLB 2424 A 1 
HETATM 8 C C21 OLB . . . Z 6 -38.681 13.594 17.107 1 52.52 ? C21 OLB 2424 A 1 
HETATM 9 C C22 OLB . . . Z 6 -39.293 14.633 18.042 1 59.13 ? C22 OLB 2424 A 1 
HETATM 10 O O23 OLB . . . Z 6 -39.318 14.084 19.328 1 68.2 ? O23 OLB 2424 A 1 
HETATM 11 C C24 OLB . . . Z 6 -38.481 15.927 18.1 1 60.12 ? C24 OLB 2424 A 1 
HETATM 12 O O25 OLB . . . Z 6 -38.966 16.71 19.156 1 65.67 ? O25 OLB 2424 A 1 
HETATM 13 C C6 OLB . . . Z 6 -37.591 5.061 16.424 1 43.76 ? C6 OLB 2424 A 1 
HETATM 14 C C7 OLB . . . Z 6 -37.788 4.098 15.255 1 44.47 ? C7 OLB 2424 A 1 
HETATM 15 C C8 OLB . . . Z 6 -38.71 2.933 15.609 1 44.62 ? C8 OLB 2424 A 1 
HETATM 16 C C9 OLB . . . Z 6 -38.078 1.638 15.105 1 54.4 ? C9 OLB 2424 A 1 
HETATM 17 C C10 OLB . . . Z 6 -38.655 0.467 15.293 1 60.03 ? C10 OLB 2424 A 1 
HETATM 18 C C11 OLB . . . Z 6 -39.998 0.341 16.01 1 60.7 ? C11 OLB 2424 A 1 
HETATM 19 C C12 OLB . . . Z 6 -40.147 -1.075 16.567 1 62.86 ? C12 OLB 2424 A 1 
HETATM 20 C C13 OLB . . . Z 6 -40.805 -2.05 15.591 1 60.79 ? C13 OLB 2424 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#