data_5IVB # _model_server_result.job_id T4jbmaSA5DCo45vw7JnSOQ _model_server_result.datetime_utc '2024-11-23 13:11:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ivb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5IVB # _exptl.entry_id 5IVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.63 _cell.angle_gamma 90 _cell.entry_id 5IVB _cell.length_a 116.34 _cell.length_b 62.199 _cell.length_c 46.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 B O1 AKG . A AKG 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc5 B O5 AKG . A AKG 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 C MN MN . A MN 602 1_555 H O HOH . A HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 144 n n C1 C2 GOL sing 145 n n C1 H11 GOL sing 146 n n C1 H12 GOL sing 147 n n O1 HO1 GOL sing 148 n n C2 O2 GOL sing 149 n n C2 C3 GOL sing 150 n n C2 H2 GOL sing 151 n n O2 HO2 GOL sing 152 n n C3 O3 GOL sing 153 n n C3 H31 GOL sing 154 n n C3 H32 GOL sing 155 n n O3 HO3 GOL sing 156 n n # _atom_sites.entry_id 5IVB _atom_sites.fract_transf_matrix[1][1] 0.008595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000394 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AKG A 1 601 1 AKG AKG . C 3 MN A 1 602 1 MN MN . D 4 GOL A 1 603 3 GOL GOL . E 4 GOL A 1 604 4 GOL GOL . F 4 GOL A 1 605 5 GOL GOL . G 4 GOL A 1 606 6 GOL GOL . H 5 HOH A 1 701 93 HOH HOH . H 5 HOH A 2 702 123 HOH HOH . H 5 HOH A 3 703 26 HOH HOH . H 5 HOH A 4 704 138 HOH HOH . H 5 HOH A 5 705 127 HOH HOH . H 5 HOH A 6 706 274 HOH HOH . H 5 HOH A 7 707 182 HOH HOH . H 5 HOH A 8 708 70 HOH HOH . H 5 HOH A 9 709 153 HOH HOH . H 5 HOH A 10 710 167 HOH HOH . H 5 HOH A 11 711 39 HOH HOH . H 5 HOH A 12 712 88 HOH HOH . H 5 HOH A 13 713 102 HOH HOH . H 5 HOH A 14 714 183 HOH HOH . H 5 HOH A 15 715 36 HOH HOH . H 5 HOH A 16 716 30 HOH HOH . H 5 HOH A 17 717 151 HOH HOH . H 5 HOH A 18 718 261 HOH HOH . H 5 HOH A 19 719 124 HOH HOH . H 5 HOH A 20 720 3 HOH HOH . H 5 HOH A 21 721 91 HOH HOH . H 5 HOH A 22 722 29 HOH HOH . H 5 HOH A 23 723 187 HOH HOH . H 5 HOH A 24 724 28 HOH HOH . H 5 HOH A 25 725 216 HOH HOH . H 5 HOH A 26 726 125 HOH HOH . H 5 HOH A 27 727 97 HOH HOH . H 5 HOH A 28 728 41 HOH HOH . H 5 HOH A 29 729 189 HOH HOH . H 5 HOH A 30 730 117 HOH HOH . H 5 HOH A 31 731 25 HOH HOH . H 5 HOH A 32 732 72 HOH HOH . H 5 HOH A 33 733 69 HOH HOH . H 5 HOH A 34 734 266 HOH HOH . H 5 HOH A 35 735 148 HOH HOH . H 5 HOH A 36 736 66 HOH HOH . H 5 HOH A 37 737 242 HOH HOH . H 5 HOH A 38 738 77 HOH HOH . H 5 HOH A 39 739 67 HOH HOH . H 5 HOH A 40 740 10 HOH HOH . H 5 HOH A 41 741 19 HOH HOH . H 5 HOH A 42 742 23 HOH HOH . H 5 HOH A 43 743 128 HOH HOH . H 5 HOH A 44 744 27 HOH HOH . H 5 HOH A 45 745 9 HOH HOH . H 5 HOH A 46 746 48 HOH HOH . H 5 HOH A 47 747 50 HOH HOH . H 5 HOH A 48 748 110 HOH HOH . H 5 HOH A 49 749 13 HOH HOH . H 5 HOH A 50 750 115 HOH HOH . H 5 HOH A 51 751 116 HOH HOH . H 5 HOH A 52 752 7 HOH HOH . H 5 HOH A 53 753 176 HOH HOH . H 5 HOH A 54 754 144 HOH HOH . H 5 HOH A 55 755 2 HOH HOH . H 5 HOH A 56 756 106 HOH HOH . H 5 HOH A 57 757 173 HOH HOH . H 5 HOH A 58 758 44 HOH HOH . H 5 HOH A 59 759 100 HOH HOH . H 5 HOH A 60 760 51 HOH HOH . H 5 HOH A 61 761 63 HOH HOH . H 5 HOH A 62 762 75 HOH HOH . H 5 HOH A 63 763 31 HOH HOH . H 5 HOH A 64 764 45 HOH HOH . H 5 HOH A 65 765 198 HOH HOH . H 5 HOH A 66 766 161 HOH HOH . H 5 HOH A 67 767 43 HOH HOH . H 5 HOH A 68 768 15 HOH HOH . H 5 HOH A 69 769 239 HOH HOH . H 5 HOH A 70 770 204 HOH HOH . H 5 HOH A 71 771 186 HOH HOH . H 5 HOH A 72 772 34 HOH HOH . H 5 HOH A 73 773 122 HOH HOH . H 5 HOH A 74 774 119 HOH HOH . H 5 HOH A 75 775 53 HOH HOH . H 5 HOH A 76 776 8 HOH HOH . H 5 HOH A 77 777 96 HOH HOH . H 5 HOH A 78 778 118 HOH HOH . H 5 HOH A 79 779 170 HOH HOH . H 5 HOH A 80 780 12 HOH HOH . H 5 HOH A 81 781 175 HOH HOH . H 5 HOH A 82 782 14 HOH HOH . H 5 HOH A 83 783 38 HOH HOH . H 5 HOH A 84 784 87 HOH HOH . H 5 HOH A 85 785 21 HOH HOH . H 5 HOH A 86 786 140 HOH HOH . H 5 HOH A 87 787 18 HOH HOH . H 5 HOH A 88 788 17 HOH HOH . H 5 HOH A 89 789 58 HOH HOH . H 5 HOH A 90 790 71 HOH HOH . H 5 HOH A 91 791 56 HOH HOH . H 5 HOH A 92 792 35 HOH HOH . H 5 HOH A 93 793 20 HOH HOH . H 5 HOH A 94 794 135 HOH HOH . H 5 HOH A 95 795 134 HOH HOH . H 5 HOH A 96 796 90 HOH HOH . H 5 HOH A 97 797 73 HOH HOH . H 5 HOH A 98 798 214 HOH HOH . H 5 HOH A 99 799 5 HOH HOH . H 5 HOH A 100 800 1 HOH HOH . H 5 HOH A 101 801 107 HOH HOH . H 5 HOH A 102 802 139 HOH HOH . H 5 HOH A 103 803 184 HOH HOH . H 5 HOH A 104 804 78 HOH HOH . H 5 HOH A 105 805 85 HOH HOH . H 5 HOH A 106 806 32 HOH HOH . H 5 HOH A 107 807 74 HOH HOH . H 5 HOH A 108 808 82 HOH HOH . H 5 HOH A 109 809 111 HOH HOH . H 5 HOH A 110 810 149 HOH HOH . H 5 HOH A 111 811 165 HOH HOH . H 5 HOH A 112 812 95 HOH HOH . H 5 HOH A 113 813 86 HOH HOH . H 5 HOH A 114 814 57 HOH HOH . H 5 HOH A 115 815 52 HOH HOH . H 5 HOH A 116 816 6 HOH HOH . H 5 HOH A 117 817 84 HOH HOH . H 5 HOH A 118 818 105 HOH HOH . H 5 HOH A 119 819 55 HOH HOH . H 5 HOH A 120 820 4 HOH HOH . H 5 HOH A 121 821 109 HOH HOH . H 5 HOH A 122 822 83 HOH HOH . H 5 HOH A 123 823 238 HOH HOH . H 5 HOH A 124 824 64 HOH HOH . H 5 HOH A 125 825 142 HOH HOH . H 5 HOH A 126 826 37 HOH HOH . H 5 HOH A 127 827 230 HOH HOH . H 5 HOH A 128 828 24 HOH HOH . H 5 HOH A 129 829 163 HOH HOH . H 5 HOH A 130 830 46 HOH HOH . H 5 HOH A 131 831 178 HOH HOH . H 5 HOH A 132 832 33 HOH HOH . H 5 HOH A 133 833 16 HOH HOH . H 5 HOH A 134 834 49 HOH HOH . H 5 HOH A 135 835 104 HOH HOH . H 5 HOH A 136 836 68 HOH HOH . H 5 HOH A 137 837 132 HOH HOH . H 5 HOH A 138 838 158 HOH HOH . H 5 HOH A 139 839 114 HOH HOH . H 5 HOH A 140 840 121 HOH HOH . H 5 HOH A 141 841 79 HOH HOH . H 5 HOH A 142 842 65 HOH HOH . H 5 HOH A 143 843 11 HOH HOH . H 5 HOH A 144 844 22 HOH HOH . H 5 HOH A 145 845 99 HOH HOH . H 5 HOH A 146 846 61 HOH HOH . H 5 HOH A 147 847 219 HOH HOH . H 5 HOH A 148 848 206 HOH HOH . H 5 HOH A 149 849 137 HOH HOH . H 5 HOH A 150 850 188 HOH HOH . H 5 HOH A 151 851 80 HOH HOH . H 5 HOH A 152 852 129 HOH HOH . H 5 HOH A 153 853 223 HOH HOH . H 5 HOH A 154 854 155 HOH HOH . H 5 HOH A 155 855 143 HOH HOH . H 5 HOH A 156 856 94 HOH HOH . H 5 HOH A 157 857 232 HOH HOH . H 5 HOH A 158 858 130 HOH HOH . H 5 HOH A 159 859 277 HOH HOH . H 5 HOH A 160 860 103 HOH HOH . H 5 HOH A 161 861 89 HOH HOH . H 5 HOH A 162 862 222 HOH HOH . H 5 HOH A 163 863 150 HOH HOH . H 5 HOH A 164 864 171 HOH HOH . H 5 HOH A 165 865 218 HOH HOH . H 5 HOH A 166 866 177 HOH HOH . H 5 HOH A 167 867 47 HOH HOH . H 5 HOH A 168 868 113 HOH HOH . H 5 HOH A 169 869 260 HOH HOH . H 5 HOH A 170 870 112 HOH HOH . H 5 HOH A 171 871 101 HOH HOH . H 5 HOH A 172 872 212 HOH HOH . H 5 HOH A 173 873 269 HOH HOH . H 5 HOH A 174 874 62 HOH HOH . H 5 HOH A 175 875 98 HOH HOH . H 5 HOH A 176 876 250 HOH HOH . H 5 HOH A 177 877 195 HOH HOH . H 5 HOH A 178 878 272 HOH HOH . H 5 HOH A 179 879 224 HOH HOH . H 5 HOH A 180 880 194 HOH HOH . H 5 HOH A 181 881 201 HOH HOH . H 5 HOH A 182 882 162 HOH HOH . H 5 HOH A 183 883 252 HOH HOH . H 5 HOH A 184 884 202 HOH HOH . H 5 HOH A 185 885 172 HOH HOH . H 5 HOH A 186 886 181 HOH HOH . H 5 HOH A 187 887 263 HOH HOH . H 5 HOH A 188 888 156 HOH HOH . H 5 HOH A 189 889 270 HOH HOH . H 5 HOH A 190 890 141 HOH HOH . H 5 HOH A 191 891 233 HOH HOH . H 5 HOH A 192 892 267 HOH HOH . H 5 HOH A 193 893 248 HOH HOH . H 5 HOH A 194 894 276 HOH HOH . H 5 HOH A 195 895 146 HOH HOH . H 5 HOH A 196 896 54 HOH HOH . H 5 HOH A 197 897 133 HOH HOH . H 5 HOH A 198 898 271 HOH HOH . H 5 HOH A 199 899 265 HOH HOH . H 5 HOH A 200 900 131 HOH HOH . H 5 HOH A 201 901 160 HOH HOH . H 5 HOH A 202 902 120 HOH HOH . H 5 HOH A 203 903 264 HOH HOH . H 5 HOH A 204 904 253 HOH HOH . H 5 HOH A 205 905 40 HOH HOH . H 5 HOH A 206 906 227 HOH HOH . H 5 HOH A 207 907 251 HOH HOH . H 5 HOH A 208 908 275 HOH HOH . H 5 HOH A 209 909 152 HOH HOH . H 5 HOH A 210 910 192 HOH HOH . H 5 HOH A 211 911 273 HOH HOH . H 5 HOH A 212 912 226 HOH HOH . H 5 HOH A 213 913 221 HOH HOH . H 5 HOH A 214 914 245 HOH HOH . H 5 HOH A 215 915 213 HOH HOH . H 5 HOH A 216 916 154 HOH HOH . H 5 HOH A 217 917 243 HOH HOH . H 5 HOH A 218 918 258 HOH HOH . H 5 HOH A 219 919 268 HOH HOH . H 5 HOH A 220 920 191 HOH HOH . H 5 HOH A 221 921 244 HOH HOH . H 5 HOH A 222 922 174 HOH HOH . H 5 HOH A 223 923 166 HOH HOH . H 5 HOH A 224 924 217 HOH HOH . H 5 HOH A 225 925 209 HOH HOH . H 5 HOH A 226 926 225 HOH HOH . H 5 HOH A 227 927 108 HOH HOH . H 5 HOH A 228 928 159 HOH HOH . H 5 HOH A 229 929 180 HOH HOH . H 5 HOH A 230 930 215 HOH HOH . H 5 HOH A 231 931 145 HOH HOH . H 5 HOH A 232 932 164 HOH HOH . H 5 HOH A 233 933 179 HOH HOH . H 5 HOH A 234 934 246 HOH HOH . H 5 HOH A 235 935 229 HOH HOH . H 5 HOH A 236 936 257 HOH HOH . H 5 HOH A 237 937 126 HOH HOH . H 5 HOH A 238 938 256 HOH HOH . H 5 HOH A 239 939 241 HOH HOH . H 5 HOH A 240 940 60 HOH HOH . H 5 HOH A 241 941 92 HOH HOH . H 5 HOH A 242 942 237 HOH HOH . H 5 HOH A 243 943 169 HOH HOH . H 5 HOH A 244 944 42 HOH HOH . H 5 HOH A 245 945 193 HOH HOH . H 5 HOH A 246 946 76 HOH HOH . H 5 HOH A 247 947 168 HOH HOH . H 5 HOH A 248 948 157 HOH HOH . H 5 HOH A 249 949 236 HOH HOH . H 5 HOH A 250 950 247 HOH HOH . H 5 HOH A 251 951 240 HOH HOH . H 5 HOH A 252 952 136 HOH HOH . H 5 HOH A 253 953 203 HOH HOH . H 5 HOH A 254 954 208 HOH HOH . H 5 HOH A 255 955 190 HOH HOH . H 5 HOH A 256 956 196 HOH HOH . H 5 HOH A 257 957 228 HOH HOH . H 5 HOH A 258 958 231 HOH HOH . H 5 HOH A 259 959 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -32.373 25.056 7.252 1 68.6 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . D 4 -31.416 26.052 7.538 1 34.2 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . D 4 -33.443 25.064 8.337 1 110.14 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . D 4 -34.136 26.293 8.323 1 48.75 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . D 4 -34.421 23.92 8.112 1 66.95 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . D 4 -35.404 23.945 9.125 1 62.4 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #