data_5IVC # _model_server_result.job_id AJmP33Tsr65MuYjUPCtBZQ _model_server_result.datetime_utc '2024-10-19 19:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ivc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5IVC # _exptl.entry_id 5IVC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.18 _cell.angle_gamma 90 _cell.entry_id 5IVC _cell.length_a 116.216 _cell.length_b 62.295 _cell.length_c 46.519 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IVC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 B N07 6E7 . A 6E7 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc5 B N15 6E7 . A 6E7 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc6 C MN MN . A MN 602 1_555 H O HOH . A HOH 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 128 n n C1 C2 EDO sing 129 n n C1 H11 EDO sing 130 n n C1 H12 EDO sing 131 n n O1 HO1 EDO sing 132 n n C2 O2 EDO sing 133 n n C2 H21 EDO sing 134 n n C2 H22 EDO sing 135 n n O2 HO2 EDO sing 136 n n # _atom_sites.entry_id 5IVC _atom_sites.fract_transf_matrix[1][1] 0.008605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000328 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6E7 A 1 601 1 6E7 LIG . C 3 MN A 1 602 1 MN MN . D 4 EDO A 1 603 1 EDO EDO . E 4 EDO A 1 604 2 EDO EDO . F 4 EDO A 1 605 4 EDO EDO . G 5 GOL A 1 606 1 GOL GOL . H 6 HOH A 1 701 246 HOH HOH . H 6 HOH A 2 702 305 HOH HOH . H 6 HOH A 3 703 83 HOH HOH . H 6 HOH A 4 704 214 HOH HOH . H 6 HOH A 5 705 186 HOH HOH . H 6 HOH A 6 706 154 HOH HOH . H 6 HOH A 7 707 107 HOH HOH . H 6 HOH A 8 708 184 HOH HOH . H 6 HOH A 9 709 124 HOH HOH . H 6 HOH A 10 710 311 HOH HOH . H 6 HOH A 11 711 227 HOH HOH . H 6 HOH A 12 712 165 HOH HOH . H 6 HOH A 13 713 161 HOH HOH . H 6 HOH A 14 714 28 HOH HOH . H 6 HOH A 15 715 164 HOH HOH . H 6 HOH A 16 716 229 HOH HOH . H 6 HOH A 17 717 198 HOH HOH . H 6 HOH A 18 718 197 HOH HOH . H 6 HOH A 19 719 45 HOH HOH . H 6 HOH A 20 720 222 HOH HOH . H 6 HOH A 21 721 155 HOH HOH . H 6 HOH A 22 722 33 HOH HOH . H 6 HOH A 23 723 187 HOH HOH . H 6 HOH A 24 724 121 HOH HOH . H 6 HOH A 25 725 255 HOH HOH . H 6 HOH A 26 726 118 HOH HOH . H 6 HOH A 27 727 141 HOH HOH . H 6 HOH A 28 728 111 HOH HOH . H 6 HOH A 29 729 96 HOH HOH . H 6 HOH A 30 730 254 HOH HOH . H 6 HOH A 31 731 36 HOH HOH . H 6 HOH A 32 732 276 HOH HOH . H 6 HOH A 33 733 294 HOH HOH . H 6 HOH A 34 734 3 HOH HOH . H 6 HOH A 35 735 122 HOH HOH . H 6 HOH A 36 736 113 HOH HOH . H 6 HOH A 37 737 16 HOH HOH . H 6 HOH A 38 738 63 HOH HOH . H 6 HOH A 39 739 133 HOH HOH . H 6 HOH A 40 740 144 HOH HOH . H 6 HOH A 41 741 27 HOH HOH . H 6 HOH A 42 742 51 HOH HOH . H 6 HOH A 43 743 196 HOH HOH . H 6 HOH A 44 744 180 HOH HOH . H 6 HOH A 45 745 147 HOH HOH . H 6 HOH A 46 746 148 HOH HOH . H 6 HOH A 47 747 131 HOH HOH . H 6 HOH A 48 748 22 HOH HOH . H 6 HOH A 49 749 69 HOH HOH . H 6 HOH A 50 750 17 HOH HOH . H 6 HOH A 51 751 10 HOH HOH . H 6 HOH A 52 752 64 HOH HOH . H 6 HOH A 53 753 114 HOH HOH . H 6 HOH A 54 754 316 HOH HOH . H 6 HOH A 55 755 65 HOH HOH . H 6 HOH A 56 756 108 HOH HOH . H 6 HOH A 57 757 283 HOH HOH . H 6 HOH A 58 758 172 HOH HOH . H 6 HOH A 59 759 300 HOH HOH . H 6 HOH A 60 760 91 HOH HOH . H 6 HOH A 61 761 101 HOH HOH . H 6 HOH A 62 762 26 HOH HOH . H 6 HOH A 63 763 78 HOH HOH . H 6 HOH A 64 764 19 HOH HOH . H 6 HOH A 65 765 24 HOH HOH . H 6 HOH A 66 766 128 HOH HOH . H 6 HOH A 67 767 296 HOH HOH . H 6 HOH A 68 768 71 HOH HOH . H 6 HOH A 69 769 94 HOH HOH . H 6 HOH A 70 770 102 HOH HOH . H 6 HOH A 71 771 25 HOH HOH . H 6 HOH A 72 772 79 HOH HOH . H 6 HOH A 73 773 142 HOH HOH . H 6 HOH A 74 774 44 HOH HOH . H 6 HOH A 75 775 193 HOH HOH . H 6 HOH A 76 776 48 HOH HOH . H 6 HOH A 77 777 2 HOH HOH . H 6 HOH A 78 778 37 HOH HOH . H 6 HOH A 79 779 304 HOH HOH . H 6 HOH A 80 780 138 HOH HOH . H 6 HOH A 81 781 159 HOH HOH . H 6 HOH A 82 782 244 HOH HOH . H 6 HOH A 83 783 146 HOH HOH . H 6 HOH A 84 784 179 HOH HOH . H 6 HOH A 85 785 90 HOH HOH . H 6 HOH A 86 786 163 HOH HOH . H 6 HOH A 87 787 9 HOH HOH . H 6 HOH A 88 788 18 HOH HOH . H 6 HOH A 89 789 12 HOH HOH . H 6 HOH A 90 790 46 HOH HOH . H 6 HOH A 91 791 54 HOH HOH . H 6 HOH A 92 792 58 HOH HOH . H 6 HOH A 93 793 75 HOH HOH . H 6 HOH A 94 794 211 HOH HOH . H 6 HOH A 95 795 81 HOH HOH . H 6 HOH A 96 796 116 HOH HOH . H 6 HOH A 97 797 20 HOH HOH . H 6 HOH A 98 798 86 HOH HOH . H 6 HOH A 99 799 31 HOH HOH . H 6 HOH A 100 800 35 HOH HOH . H 6 HOH A 101 801 5 HOH HOH . H 6 HOH A 102 802 60 HOH HOH . H 6 HOH A 103 803 271 HOH HOH . H 6 HOH A 104 804 4 HOH HOH . H 6 HOH A 105 805 72 HOH HOH . H 6 HOH A 106 806 132 HOH HOH . H 6 HOH A 107 807 7 HOH HOH . H 6 HOH A 108 808 120 HOH HOH . H 6 HOH A 109 809 11 HOH HOH . H 6 HOH A 110 810 66 HOH HOH . H 6 HOH A 111 811 127 HOH HOH . H 6 HOH A 112 812 218 HOH HOH . H 6 HOH A 113 813 210 HOH HOH . H 6 HOH A 114 814 149 HOH HOH . H 6 HOH A 115 815 176 HOH HOH . H 6 HOH A 116 816 84 HOH HOH . H 6 HOH A 117 817 130 HOH HOH . H 6 HOH A 118 818 8 HOH HOH . H 6 HOH A 119 819 92 HOH HOH . H 6 HOH A 120 820 189 HOH HOH . H 6 HOH A 121 821 95 HOH HOH . H 6 HOH A 122 822 201 HOH HOH . H 6 HOH A 123 823 194 HOH HOH . H 6 HOH A 124 824 93 HOH HOH . H 6 HOH A 125 825 88 HOH HOH . H 6 HOH A 126 826 14 HOH HOH . H 6 HOH A 127 827 47 HOH HOH . H 6 HOH A 128 828 53 HOH HOH . H 6 HOH A 129 829 77 HOH HOH . H 6 HOH A 130 830 134 HOH HOH . H 6 HOH A 131 831 39 HOH HOH . H 6 HOH A 132 832 40 HOH HOH . H 6 HOH A 133 833 97 HOH HOH . H 6 HOH A 134 834 109 HOH HOH . H 6 HOH A 135 835 1 HOH HOH . H 6 HOH A 136 836 178 HOH HOH . H 6 HOH A 137 837 52 HOH HOH . H 6 HOH A 138 838 29 HOH HOH . H 6 HOH A 139 839 219 HOH HOH . H 6 HOH A 140 840 253 HOH HOH . H 6 HOH A 141 841 129 HOH HOH . H 6 HOH A 142 842 104 HOH HOH . H 6 HOH A 143 843 68 HOH HOH . H 6 HOH A 144 844 23 HOH HOH . H 6 HOH A 145 845 30 HOH HOH . H 6 HOH A 146 846 103 HOH HOH . H 6 HOH A 147 847 76 HOH HOH . H 6 HOH A 148 848 15 HOH HOH . H 6 HOH A 149 849 106 HOH HOH . H 6 HOH A 150 850 6 HOH HOH . H 6 HOH A 151 851 247 HOH HOH . H 6 HOH A 152 852 268 HOH HOH . H 6 HOH A 153 853 13 HOH HOH . H 6 HOH A 154 854 42 HOH HOH . H 6 HOH A 155 855 85 HOH HOH . H 6 HOH A 156 856 73 HOH HOH . H 6 HOH A 157 857 200 HOH HOH . H 6 HOH A 158 858 310 HOH HOH . H 6 HOH A 159 859 59 HOH HOH . H 6 HOH A 160 860 188 HOH HOH . H 6 HOH A 161 861 80 HOH HOH . H 6 HOH A 162 862 238 HOH HOH . H 6 HOH A 163 863 43 HOH HOH . H 6 HOH A 164 864 119 HOH HOH . H 6 HOH A 165 865 32 HOH HOH . H 6 HOH A 166 866 150 HOH HOH . H 6 HOH A 167 867 173 HOH HOH . H 6 HOH A 168 868 34 HOH HOH . H 6 HOH A 169 869 62 HOH HOH . H 6 HOH A 170 870 41 HOH HOH . H 6 HOH A 171 871 50 HOH HOH . H 6 HOH A 172 872 242 HOH HOH . H 6 HOH A 173 873 248 HOH HOH . H 6 HOH A 174 874 135 HOH HOH . H 6 HOH A 175 875 117 HOH HOH . H 6 HOH A 176 876 168 HOH HOH . H 6 HOH A 177 877 143 HOH HOH . H 6 HOH A 178 878 67 HOH HOH . H 6 HOH A 179 879 82 HOH HOH . H 6 HOH A 180 880 270 HOH HOH . H 6 HOH A 181 881 205 HOH HOH . H 6 HOH A 182 882 166 HOH HOH . H 6 HOH A 183 883 87 HOH HOH . H 6 HOH A 184 884 110 HOH HOH . H 6 HOH A 185 885 140 HOH HOH . H 6 HOH A 186 886 56 HOH HOH . H 6 HOH A 187 887 153 HOH HOH . H 6 HOH A 188 888 99 HOH HOH . H 6 HOH A 189 889 215 HOH HOH . H 6 HOH A 190 890 61 HOH HOH . H 6 HOH A 191 891 100 HOH HOH . H 6 HOH A 192 892 136 HOH HOH . H 6 HOH A 193 893 319 HOH HOH . H 6 HOH A 194 894 285 HOH HOH . H 6 HOH A 195 895 281 HOH HOH . H 6 HOH A 196 896 318 HOH HOH . H 6 HOH A 197 897 177 HOH HOH . H 6 HOH A 198 898 89 HOH HOH . H 6 HOH A 199 899 224 HOH HOH . H 6 HOH A 200 900 232 HOH HOH . H 6 HOH A 201 901 208 HOH HOH . H 6 HOH A 202 902 226 HOH HOH . H 6 HOH A 203 903 74 HOH HOH . H 6 HOH A 204 904 213 HOH HOH . H 6 HOH A 205 905 21 HOH HOH . H 6 HOH A 206 906 195 HOH HOH . H 6 HOH A 207 907 220 HOH HOH . H 6 HOH A 208 908 157 HOH HOH . H 6 HOH A 209 909 207 HOH HOH . H 6 HOH A 210 910 262 HOH HOH . H 6 HOH A 211 911 190 HOH HOH . H 6 HOH A 212 912 240 HOH HOH . H 6 HOH A 213 913 295 HOH HOH . H 6 HOH A 214 914 260 HOH HOH . H 6 HOH A 215 915 112 HOH HOH . H 6 HOH A 216 916 174 HOH HOH . H 6 HOH A 217 917 241 HOH HOH . H 6 HOH A 218 918 251 HOH HOH . H 6 HOH A 219 919 315 HOH HOH . H 6 HOH A 220 920 313 HOH HOH . H 6 HOH A 221 921 231 HOH HOH . H 6 HOH A 222 922 105 HOH HOH . H 6 HOH A 223 923 317 HOH HOH . H 6 HOH A 224 924 199 HOH HOH . H 6 HOH A 225 925 235 HOH HOH . H 6 HOH A 226 926 126 HOH HOH . H 6 HOH A 227 927 302 HOH HOH . H 6 HOH A 228 928 256 HOH HOH . H 6 HOH A 229 929 258 HOH HOH . H 6 HOH A 230 930 203 HOH HOH . H 6 HOH A 231 931 257 HOH HOH . H 6 HOH A 232 932 115 HOH HOH . H 6 HOH A 233 933 314 HOH HOH . H 6 HOH A 234 934 158 HOH HOH . H 6 HOH A 235 935 249 HOH HOH . H 6 HOH A 236 936 234 HOH HOH . H 6 HOH A 237 937 228 HOH HOH . H 6 HOH A 238 938 290 HOH HOH . H 6 HOH A 239 939 169 HOH HOH . H 6 HOH A 240 940 49 HOH HOH . H 6 HOH A 241 941 243 HOH HOH . H 6 HOH A 242 942 221 HOH HOH . H 6 HOH A 243 943 209 HOH HOH . H 6 HOH A 244 944 277 HOH HOH . H 6 HOH A 245 945 175 HOH HOH . H 6 HOH A 246 946 170 HOH HOH . H 6 HOH A 247 947 123 HOH HOH . H 6 HOH A 248 948 309 HOH HOH . H 6 HOH A 249 949 303 HOH HOH . H 6 HOH A 250 950 288 HOH HOH . H 6 HOH A 251 951 171 HOH HOH . H 6 HOH A 252 952 156 HOH HOH . H 6 HOH A 253 953 266 HOH HOH . H 6 HOH A 254 954 297 HOH HOH . H 6 HOH A 255 955 225 HOH HOH . H 6 HOH A 256 956 181 HOH HOH . H 6 HOH A 257 957 125 HOH HOH . H 6 HOH A 258 958 217 HOH HOH . H 6 HOH A 259 959 306 HOH HOH . H 6 HOH A 260 960 212 HOH HOH . H 6 HOH A 261 961 250 HOH HOH . H 6 HOH A 262 962 312 HOH HOH . H 6 HOH A 263 963 139 HOH HOH . H 6 HOH A 264 964 152 HOH HOH . H 6 HOH A 265 965 192 HOH HOH . H 6 HOH A 266 966 279 HOH HOH . H 6 HOH A 267 967 286 HOH HOH . H 6 HOH A 268 968 278 HOH HOH . H 6 HOH A 269 969 204 HOH HOH . H 6 HOH A 270 970 239 HOH HOH . H 6 HOH A 271 971 55 HOH HOH . H 6 HOH A 272 972 223 HOH HOH . H 6 HOH A 273 973 38 HOH HOH . H 6 HOH A 274 974 70 HOH HOH . H 6 HOH A 275 975 237 HOH HOH . H 6 HOH A 276 976 274 HOH HOH . H 6 HOH A 277 977 236 HOH HOH . H 6 HOH A 278 978 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -28.66 28.993 1.579 1 43.03 ? C1 EDO 603 A 1 HETATM 2 O O1 EDO . . . D 4 -29.291 30.101 2.233 1 34.04 ? O1 EDO 603 A 1 HETATM 3 C C2 EDO . . . D 4 -27.235 29.381 1.194 1 45.39 ? C2 EDO 603 A 1 HETATM 4 O O2 EDO . . . D 4 -26.54 29.846 2.362 1 39.07 ? O2 EDO 603 A 1 HETATM 5 H HO1 EDO . . . D 4 -30.195 29.858 2.479 1 40.84 ? HO1 EDO 603 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #