data_5IVF # _model_server_result.job_id 8uUeHQMtJgD1ORGs-tnmLg _model_server_result.datetime_utc '2024-11-07 05:59:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ivf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5IVF # _exptl.entry_id 5IVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(1-methyl-1H-imidazol-4-yl)-2-(4,4,4-trifluorobutoxy)pyrido[3,4-d]pyrimidin-4-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.96 _cell.angle_gamma 90 _cell.entry_id 5IVF _cell.length_a 116.658 _cell.length_b 62.289 _cell.length_c 46.498 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 B N04 6EB . A 6EB 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc5 B N25 6EB . A 6EB 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 C MN MN . A MN 602 1_555 D O HOH . A HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C15 H14 F3 N5 O2' _chem_comp.formula_weight 353.299 _chem_comp.id 6EB _chem_comp.mon_nstd_flag . _chem_comp.name 8-(1-methyl-1H-imidazol-4-yl)-2-(4,4,4-trifluorobutoxy)pyrido[3,4-d]pyrimidin-4-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 N02 6EB sing 1 n y C03 N04 6EB doub 2 n y C01 N02 6EB sing 3 n n N02 C06 6EB sing 4 n y N04 C05 6EB sing 5 n y C06 C05 6EB doub 6 n y C05 C07 6EB sing 7 n n N25 C07 6EB sing 8 n y N25 C24 6EB doub 9 n y C07 C08 6EB doub 10 n y C24 C23 6EB sing 11 n y C08 N09 6EB sing 12 n y C08 C22 6EB sing 13 n y N09 C10 6EB doub 14 n y F18 C15 6EB sing 15 n n C23 C22 6EB doub 16 n y C12 C13 6EB sing 17 n n C12 O11 6EB sing 18 n n C22 C20 6EB sing 19 n y C14 C13 6EB sing 20 n n C14 C15 6EB sing 21 n n C10 O11 6EB sing 22 n n C10 N19 6EB sing 23 n y C15 F17 6EB sing 24 n n C15 F16 6EB sing 25 n n C20 N19 6EB doub 26 n y C20 O21 6EB sing 27 n n C13 H1 6EB sing 28 n n C24 H2 6EB sing 29 n n C01 H3 6EB sing 30 n n C01 H4 6EB sing 31 n n C01 H5 6EB sing 32 n n C03 H6 6EB sing 33 n n C06 H7 6EB sing 34 n n C12 H8 6EB sing 35 n n C12 H9 6EB sing 36 n n C14 H10 6EB sing 37 n n C23 H12 6EB sing 38 n n C13 H13 6EB sing 39 n n C14 H14 6EB sing 40 n n O21 H11 6EB sing 41 n n # _atom_sites.entry_id 5IVF _atom_sites.fract_transf_matrix[1][1] 0.008572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6EB A 1 601 1 6EB LIG . C 3 MN A 1 602 1 MN MN . D 4 HOH A 1 701 43 HOH HOH . D 4 HOH A 2 702 164 HOH HOH . D 4 HOH A 3 703 252 HOH HOH . D 4 HOH A 4 704 322 HOH HOH . D 4 HOH A 5 705 326 HOH HOH . D 4 HOH A 6 706 295 HOH HOH . D 4 HOH A 7 707 29 HOH HOH . D 4 HOH A 8 708 264 HOH HOH . D 4 HOH A 9 709 320 HOH HOH . D 4 HOH A 10 710 47 HOH HOH . D 4 HOH A 11 711 97 HOH HOH . D 4 HOH A 12 712 36 HOH HOH . D 4 HOH A 13 713 89 HOH HOH . D 4 HOH A 14 714 49 HOH HOH . D 4 HOH A 15 715 3 HOH HOH . D 4 HOH A 16 716 292 HOH HOH . D 4 HOH A 17 717 284 HOH HOH . D 4 HOH A 18 718 25 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 288 HOH HOH . D 4 HOH A 21 721 304 HOH HOH . D 4 HOH A 22 722 324 HOH HOH . D 4 HOH A 23 723 30 HOH HOH . D 4 HOH A 24 724 64 HOH HOH . D 4 HOH A 25 725 319 HOH HOH . D 4 HOH A 26 726 100 HOH HOH . D 4 HOH A 27 727 196 HOH HOH . D 4 HOH A 28 728 7 HOH HOH . D 4 HOH A 29 729 103 HOH HOH . D 4 HOH A 30 730 35 HOH HOH . D 4 HOH A 31 731 302 HOH HOH . D 4 HOH A 32 732 241 HOH HOH . D 4 HOH A 33 733 61 HOH HOH . D 4 HOH A 34 734 250 HOH HOH . D 4 HOH A 35 735 109 HOH HOH . D 4 HOH A 36 736 1 HOH HOH . D 4 HOH A 37 737 34 HOH HOH . D 4 HOH A 38 738 237 HOH HOH . D 4 HOH A 39 739 318 HOH HOH . D 4 HOH A 40 740 102 HOH HOH . D 4 HOH A 41 741 93 HOH HOH . D 4 HOH A 42 742 73 HOH HOH . D 4 HOH A 43 743 27 HOH HOH . D 4 HOH A 44 744 161 HOH HOH . D 4 HOH A 45 745 9 HOH HOH . D 4 HOH A 46 746 281 HOH HOH . D 4 HOH A 47 747 254 HOH HOH . D 4 HOH A 48 748 2 HOH HOH . D 4 HOH A 49 749 297 HOH HOH . D 4 HOH A 50 750 18 HOH HOH . D 4 HOH A 51 751 96 HOH HOH . D 4 HOH A 52 752 122 HOH HOH . D 4 HOH A 53 753 10 HOH HOH . D 4 HOH A 54 754 70 HOH HOH . D 4 HOH A 55 755 116 HOH HOH . D 4 HOH A 56 756 283 HOH HOH . D 4 HOH A 57 757 22 HOH HOH . D 4 HOH A 58 758 243 HOH HOH . D 4 HOH A 59 759 68 HOH HOH . D 4 HOH A 60 760 67 HOH HOH . D 4 HOH A 61 761 325 HOH HOH . D 4 HOH A 62 762 13 HOH HOH . D 4 HOH A 63 763 40 HOH HOH . D 4 HOH A 64 764 71 HOH HOH . D 4 HOH A 65 765 91 HOH HOH . D 4 HOH A 66 766 259 HOH HOH . D 4 HOH A 67 767 66 HOH HOH . D 4 HOH A 68 768 53 HOH HOH . D 4 HOH A 69 769 309 HOH HOH . D 4 HOH A 70 770 23 HOH HOH . D 4 HOH A 71 771 59 HOH HOH . D 4 HOH A 72 772 58 HOH HOH . D 4 HOH A 73 773 39 HOH HOH . D 4 HOH A 74 774 300 HOH HOH . D 4 HOH A 75 775 5 HOH HOH . D 4 HOH A 76 776 37 HOH HOH . D 4 HOH A 77 777 17 HOH HOH . D 4 HOH A 78 778 26 HOH HOH . D 4 HOH A 79 779 285 HOH HOH . D 4 HOH A 80 780 41 HOH HOH . D 4 HOH A 81 781 21 HOH HOH . D 4 HOH A 82 782 287 HOH HOH . D 4 HOH A 83 783 4 HOH HOH . D 4 HOH A 84 784 88 HOH HOH . D 4 HOH A 85 785 57 HOH HOH . D 4 HOH A 86 786 226 HOH HOH . D 4 HOH A 87 787 82 HOH HOH . D 4 HOH A 88 788 84 HOH HOH . D 4 HOH A 89 789 8 HOH HOH . D 4 HOH A 90 790 238 HOH HOH . D 4 HOH A 91 791 310 HOH HOH . D 4 HOH A 92 792 290 HOH HOH . D 4 HOH A 93 793 20 HOH HOH . D 4 HOH A 94 794 150 HOH HOH . D 4 HOH A 95 795 160 HOH HOH . D 4 HOH A 96 796 74 HOH HOH . D 4 HOH A 97 797 299 HOH HOH . D 4 HOH A 98 798 291 HOH HOH . D 4 HOH A 99 799 80 HOH HOH . D 4 HOH A 100 800 175 HOH HOH . D 4 HOH A 101 801 16 HOH HOH . D 4 HOH A 102 802 315 HOH HOH . D 4 HOH A 103 803 51 HOH HOH . D 4 HOH A 104 804 75 HOH HOH . D 4 HOH A 105 805 112 HOH HOH . D 4 HOH A 106 806 316 HOH HOH . D 4 HOH A 107 807 272 HOH HOH . D 4 HOH A 108 808 218 HOH HOH . D 4 HOH A 109 809 44 HOH HOH . D 4 HOH A 110 810 6 HOH HOH . D 4 HOH A 111 811 145 HOH HOH . D 4 HOH A 112 812 76 HOH HOH . D 4 HOH A 113 813 46 HOH HOH . D 4 HOH A 114 814 125 HOH HOH . D 4 HOH A 115 815 113 HOH HOH . D 4 HOH A 116 816 240 HOH HOH . D 4 HOH A 117 817 245 HOH HOH . D 4 HOH A 118 818 235 HOH HOH . D 4 HOH A 119 819 85 HOH HOH . D 4 HOH A 120 820 327 HOH HOH . D 4 HOH A 121 821 54 HOH HOH . D 4 HOH A 122 822 111 HOH HOH . D 4 HOH A 123 823 242 HOH HOH . D 4 HOH A 124 824 78 HOH HOH . D 4 HOH A 125 825 246 HOH HOH . D 4 HOH A 126 826 305 HOH HOH . D 4 HOH A 127 827 90 HOH HOH . D 4 HOH A 128 828 311 HOH HOH . D 4 HOH A 129 829 153 HOH HOH . D 4 HOH A 130 830 189 HOH HOH . D 4 HOH A 131 831 257 HOH HOH . D 4 HOH A 132 832 120 HOH HOH . D 4 HOH A 133 833 276 HOH HOH . D 4 HOH A 134 834 95 HOH HOH . D 4 HOH A 135 835 296 HOH HOH . D 4 HOH A 136 836 60 HOH HOH . D 4 HOH A 137 837 86 HOH HOH . D 4 HOH A 138 838 247 HOH HOH . D 4 HOH A 139 839 24 HOH HOH . D 4 HOH A 140 840 323 HOH HOH . D 4 HOH A 141 841 140 HOH HOH . D 4 HOH A 142 842 280 HOH HOH . D 4 HOH A 143 843 268 HOH HOH . D 4 HOH A 144 844 328 HOH HOH . D 4 HOH A 145 845 188 HOH HOH . D 4 HOH A 146 846 142 HOH HOH . D 4 HOH A 147 847 279 HOH HOH . D 4 HOH A 148 848 135 HOH HOH . D 4 HOH A 149 849 314 HOH HOH . D 4 HOH A 150 850 275 HOH HOH . D 4 HOH A 151 851 260 HOH HOH . D 4 HOH A 152 852 108 HOH HOH . D 4 HOH A 153 853 293 HOH HOH . D 4 HOH A 154 854 298 HOH HOH . D 4 HOH A 155 855 294 HOH HOH . D 4 HOH A 156 856 303 HOH HOH . D 4 HOH A 157 857 317 HOH HOH . D 4 HOH A 158 858 200 HOH HOH . D 4 HOH A 159 859 133 HOH HOH . D 4 HOH A 160 860 312 HOH HOH . D 4 HOH A 161 861 169 HOH HOH . D 4 HOH A 162 862 321 HOH HOH . D 4 HOH A 163 863 277 HOH HOH . D 4 HOH A 164 864 69 HOH HOH . D 4 HOH A 165 865 56 HOH HOH . D 4 HOH A 166 866 87 HOH HOH . D 4 HOH A 167 867 227 HOH HOH . D 4 HOH A 168 868 190 HOH HOH . D 4 HOH A 169 869 77 HOH HOH . D 4 HOH A 170 870 52 HOH HOH . D 4 HOH A 171 871 11 HOH HOH . D 4 HOH A 172 872 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6EB . . . B 2 -24.533 21.137 6.672 1 14.45 ? C10 6EB 601 A 1 HETATM 2 C C13 6EB . . . B 2 -26.637 24.129 6.433 1 25.77 ? C13 6EB 601 A 1 HETATM 3 C C15 6EB . . . B 2 -28.97 24.82 6.708 1 30.33 ? C15 6EB 601 A 1 HETATM 4 C C20 6EB . . . B 2 -23.729 19.066 7.556 1 16.34 ? C20 6EB 601 A 1 HETATM 5 C C22 6EB . . . B 2 -23.568 18.645 6.172 1 14.33 ? C22 6EB 601 A 1 HETATM 6 C C24 6EB . . . B 2 -22.924 17.04 4.563 1 14.04 ? C24 6EB 601 A 1 HETATM 7 C C01 6EB . . . B 2 -24.103 23.043 0.74 1 24.87 ? C01 6EB 601 A 1 HETATM 8 N N02 6EB . . . B 2 -23.925 21.689 1.264 1 23.12 ? N02 6EB 601 A 1 HETATM 9 C C03 6EB . . . B 2 -23.653 20.534 0.538 1 20.88 ? C03 6EB 601 A 1 HETATM 10 N N04 6EB . . . B 2 -23.56 19.469 1.361 1 19.56 ? N04 6EB 601 A 1 HETATM 11 C C05 6EB . . . B 2 -23.878 19.935 2.64 1 18.69 ? C05 6EB 601 A 1 HETATM 12 C C06 6EB . . . B 2 -24.012 21.305 2.581 1 21.01 ? C06 6EB 601 A 1 HETATM 13 C C07 6EB . . . B 2 -23.73 19.091 3.78 1 15.79 ? C07 6EB 601 A 1 HETATM 14 C C08 6EB . . . B 2 -23.878 19.543 5.133 1 15.14 ? C08 6EB 601 A 1 HETATM 15 N N09 6EB . . . B 2 -24.376 20.806 5.373 1 14.72 ? N09 6EB 601 A 1 HETATM 16 O O11 6EB . . . B 2 -25.02 22.352 7.037 1 17.61 ? O11 6EB 601 A 1 HETATM 17 C C12 6EB . . . B 2 -25.578 23.112 5.973 1 20.81 ? C12 6EB 601 A 1 HETATM 18 C C14 6EB . . . B 2 -27.881 23.884 6.335 1 28.96 ? C14 6EB 601 A 1 HETATM 19 F F16 6EB . . . B 2 -28.684 25.529 7.788 1 29.26 ? F16 6EB 601 A 1 HETATM 20 F F17 6EB . . . B 2 -30.122 24.186 6.937 1 30.5 ? F17 6EB 601 A 1 HETATM 21 F F18 6EB . . . B 2 -29.229 25.704 5.75 1 33.63 ? F18 6EB 601 A 1 HETATM 22 N N19 6EB . . . B 2 -24.226 20.319 7.756 1 15.88 ? N19 6EB 601 A 1 HETATM 23 O O21 6EB . . . B 2 -23.455 18.366 8.503 1 17.34 ? O21 6EB 601 A 1 HETATM 24 C C23 6EB . . . B 2 -23.071 17.376 5.884 1 15.36 ? C23 6EB 601 A 1 HETATM 25 N N25 6EB . . . B 2 -23.228 17.868 3.506 1 15.16 ? N25 6EB 601 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #