data_5IVF # _model_server_result.job_id Dc8YbcjyJ8ruy0sKf3z9kQ _model_server_result.datetime_utc '2024-11-27 06:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ivf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5IVF # _exptl.entry_id 5IVF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.96 _cell.angle_gamma 90 _cell.entry_id 5IVF _cell.length_a 116.658 _cell.length_b 62.289 _cell.length_c 46.498 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc4 B N04 6EB . A 6EB 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc5 B N25 6EB . A 6EB 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 C MN MN . A MN 602 1_555 D O HOH . A HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5IVF _atom_sites.fract_transf_matrix[1][1] 0.008572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000293 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6EB A 1 601 1 6EB LIG . C 3 MN A 1 602 1 MN MN . D 4 HOH A 1 701 43 HOH HOH . D 4 HOH A 2 702 164 HOH HOH . D 4 HOH A 3 703 252 HOH HOH . D 4 HOH A 4 704 322 HOH HOH . D 4 HOH A 5 705 326 HOH HOH . D 4 HOH A 6 706 295 HOH HOH . D 4 HOH A 7 707 29 HOH HOH . D 4 HOH A 8 708 264 HOH HOH . D 4 HOH A 9 709 320 HOH HOH . D 4 HOH A 10 710 47 HOH HOH . D 4 HOH A 11 711 97 HOH HOH . D 4 HOH A 12 712 36 HOH HOH . D 4 HOH A 13 713 89 HOH HOH . D 4 HOH A 14 714 49 HOH HOH . D 4 HOH A 15 715 3 HOH HOH . D 4 HOH A 16 716 292 HOH HOH . D 4 HOH A 17 717 284 HOH HOH . D 4 HOH A 18 718 25 HOH HOH . D 4 HOH A 19 719 19 HOH HOH . D 4 HOH A 20 720 288 HOH HOH . D 4 HOH A 21 721 304 HOH HOH . D 4 HOH A 22 722 324 HOH HOH . D 4 HOH A 23 723 30 HOH HOH . D 4 HOH A 24 724 64 HOH HOH . D 4 HOH A 25 725 319 HOH HOH . D 4 HOH A 26 726 100 HOH HOH . D 4 HOH A 27 727 196 HOH HOH . D 4 HOH A 28 728 7 HOH HOH . D 4 HOH A 29 729 103 HOH HOH . D 4 HOH A 30 730 35 HOH HOH . D 4 HOH A 31 731 302 HOH HOH . D 4 HOH A 32 732 241 HOH HOH . D 4 HOH A 33 733 61 HOH HOH . D 4 HOH A 34 734 250 HOH HOH . D 4 HOH A 35 735 109 HOH HOH . D 4 HOH A 36 736 1 HOH HOH . D 4 HOH A 37 737 34 HOH HOH . D 4 HOH A 38 738 237 HOH HOH . D 4 HOH A 39 739 318 HOH HOH . D 4 HOH A 40 740 102 HOH HOH . D 4 HOH A 41 741 93 HOH HOH . D 4 HOH A 42 742 73 HOH HOH . D 4 HOH A 43 743 27 HOH HOH . D 4 HOH A 44 744 161 HOH HOH . D 4 HOH A 45 745 9 HOH HOH . D 4 HOH A 46 746 281 HOH HOH . D 4 HOH A 47 747 254 HOH HOH . D 4 HOH A 48 748 2 HOH HOH . D 4 HOH A 49 749 297 HOH HOH . D 4 HOH A 50 750 18 HOH HOH . D 4 HOH A 51 751 96 HOH HOH . D 4 HOH A 52 752 122 HOH HOH . D 4 HOH A 53 753 10 HOH HOH . D 4 HOH A 54 754 70 HOH HOH . D 4 HOH A 55 755 116 HOH HOH . D 4 HOH A 56 756 283 HOH HOH . D 4 HOH A 57 757 22 HOH HOH . D 4 HOH A 58 758 243 HOH HOH . D 4 HOH A 59 759 68 HOH HOH . D 4 HOH A 60 760 67 HOH HOH . D 4 HOH A 61 761 325 HOH HOH . D 4 HOH A 62 762 13 HOH HOH . D 4 HOH A 63 763 40 HOH HOH . D 4 HOH A 64 764 71 HOH HOH . D 4 HOH A 65 765 91 HOH HOH . D 4 HOH A 66 766 259 HOH HOH . D 4 HOH A 67 767 66 HOH HOH . D 4 HOH A 68 768 53 HOH HOH . D 4 HOH A 69 769 309 HOH HOH . D 4 HOH A 70 770 23 HOH HOH . D 4 HOH A 71 771 59 HOH HOH . D 4 HOH A 72 772 58 HOH HOH . D 4 HOH A 73 773 39 HOH HOH . D 4 HOH A 74 774 300 HOH HOH . D 4 HOH A 75 775 5 HOH HOH . D 4 HOH A 76 776 37 HOH HOH . D 4 HOH A 77 777 17 HOH HOH . D 4 HOH A 78 778 26 HOH HOH . D 4 HOH A 79 779 285 HOH HOH . D 4 HOH A 80 780 41 HOH HOH . D 4 HOH A 81 781 21 HOH HOH . D 4 HOH A 82 782 287 HOH HOH . D 4 HOH A 83 783 4 HOH HOH . D 4 HOH A 84 784 88 HOH HOH . D 4 HOH A 85 785 57 HOH HOH . D 4 HOH A 86 786 226 HOH HOH . D 4 HOH A 87 787 82 HOH HOH . D 4 HOH A 88 788 84 HOH HOH . D 4 HOH A 89 789 8 HOH HOH . D 4 HOH A 90 790 238 HOH HOH . D 4 HOH A 91 791 310 HOH HOH . D 4 HOH A 92 792 290 HOH HOH . D 4 HOH A 93 793 20 HOH HOH . D 4 HOH A 94 794 150 HOH HOH . D 4 HOH A 95 795 160 HOH HOH . D 4 HOH A 96 796 74 HOH HOH . D 4 HOH A 97 797 299 HOH HOH . D 4 HOH A 98 798 291 HOH HOH . D 4 HOH A 99 799 80 HOH HOH . D 4 HOH A 100 800 175 HOH HOH . D 4 HOH A 101 801 16 HOH HOH . D 4 HOH A 102 802 315 HOH HOH . D 4 HOH A 103 803 51 HOH HOH . D 4 HOH A 104 804 75 HOH HOH . D 4 HOH A 105 805 112 HOH HOH . D 4 HOH A 106 806 316 HOH HOH . D 4 HOH A 107 807 272 HOH HOH . D 4 HOH A 108 808 218 HOH HOH . D 4 HOH A 109 809 44 HOH HOH . D 4 HOH A 110 810 6 HOH HOH . D 4 HOH A 111 811 145 HOH HOH . D 4 HOH A 112 812 76 HOH HOH . D 4 HOH A 113 813 46 HOH HOH . D 4 HOH A 114 814 125 HOH HOH . D 4 HOH A 115 815 113 HOH HOH . D 4 HOH A 116 816 240 HOH HOH . D 4 HOH A 117 817 245 HOH HOH . D 4 HOH A 118 818 235 HOH HOH . D 4 HOH A 119 819 85 HOH HOH . D 4 HOH A 120 820 327 HOH HOH . D 4 HOH A 121 821 54 HOH HOH . D 4 HOH A 122 822 111 HOH HOH . D 4 HOH A 123 823 242 HOH HOH . D 4 HOH A 124 824 78 HOH HOH . D 4 HOH A 125 825 246 HOH HOH . D 4 HOH A 126 826 305 HOH HOH . D 4 HOH A 127 827 90 HOH HOH . D 4 HOH A 128 828 311 HOH HOH . D 4 HOH A 129 829 153 HOH HOH . D 4 HOH A 130 830 189 HOH HOH . D 4 HOH A 131 831 257 HOH HOH . D 4 HOH A 132 832 120 HOH HOH . D 4 HOH A 133 833 276 HOH HOH . D 4 HOH A 134 834 95 HOH HOH . D 4 HOH A 135 835 296 HOH HOH . D 4 HOH A 136 836 60 HOH HOH . D 4 HOH A 137 837 86 HOH HOH . D 4 HOH A 138 838 247 HOH HOH . D 4 HOH A 139 839 24 HOH HOH . D 4 HOH A 140 840 323 HOH HOH . D 4 HOH A 141 841 140 HOH HOH . D 4 HOH A 142 842 280 HOH HOH . D 4 HOH A 143 843 268 HOH HOH . D 4 HOH A 144 844 328 HOH HOH . D 4 HOH A 145 845 188 HOH HOH . D 4 HOH A 146 846 142 HOH HOH . D 4 HOH A 147 847 279 HOH HOH . D 4 HOH A 148 848 135 HOH HOH . D 4 HOH A 149 849 314 HOH HOH . D 4 HOH A 150 850 275 HOH HOH . D 4 HOH A 151 851 260 HOH HOH . D 4 HOH A 152 852 108 HOH HOH . D 4 HOH A 153 853 293 HOH HOH . D 4 HOH A 154 854 298 HOH HOH . D 4 HOH A 155 855 294 HOH HOH . D 4 HOH A 156 856 303 HOH HOH . D 4 HOH A 157 857 317 HOH HOH . D 4 HOH A 158 858 200 HOH HOH . D 4 HOH A 159 859 133 HOH HOH . D 4 HOH A 160 860 312 HOH HOH . D 4 HOH A 161 861 169 HOH HOH . D 4 HOH A 162 862 321 HOH HOH . D 4 HOH A 163 863 277 HOH HOH . D 4 HOH A 164 864 69 HOH HOH . D 4 HOH A 165 865 56 HOH HOH . D 4 HOH A 166 866 87 HOH HOH . D 4 HOH A 167 867 227 HOH HOH . D 4 HOH A 168 868 190 HOH HOH . D 4 HOH A 169 869 77 HOH HOH . D 4 HOH A 170 870 52 HOH HOH . D 4 HOH A 171 871 11 HOH HOH . D 4 HOH A 172 872 128 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -23.582 _atom_site.Cartn_y 17.355 _atom_site.Cartn_z 1.299 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #