data_5IW0 # _model_server_result.job_id tvyWPzNBM-LlujphYJt_bQ _model_server_result.datetime_utc '2024-11-24 15:26:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 5IW0 # _exptl.entry_id 5IW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.93 _cell.angle_gamma 90 _cell.entry_id 5IW0 _cell.length_a 116.32 _cell.length_b 62.741 _cell.length_c 46.609 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 B N08 6EP . A 6EP 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 B N22 6EP . A 6EP 601 1_555 D MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc6 D MN MN . A MN 603 1_555 I O HOH . A HOH 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 193 n n C1 C2 GOL sing 194 n n C1 H11 GOL sing 195 n n C1 H12 GOL sing 196 n n O1 HO1 GOL sing 197 n n C2 O2 GOL sing 198 n n C2 C3 GOL sing 199 n n C2 H2 GOL sing 200 n n O2 HO2 GOL sing 201 n n C3 O3 GOL sing 202 n n C3 H31 GOL sing 203 n n C3 H32 GOL sing 204 n n O3 HO3 GOL sing 205 n n # _atom_sites.entry_id 5IW0 _atom_sites.fract_transf_matrix[1][1] 0.008597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00029 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6EP A 1 601 1 6EP LIG . C 3 AKG A 1 602 2 AKG AKG . D 4 MN A 1 603 1 MN MN . E 5 EDO A 1 604 2 EDO EDO . F 5 EDO A 1 605 4 EDO EDO . G 6 GOL A 1 606 1 GOL GOL . H 6 GOL A 1 607 2 GOL GOL . I 7 HOH A 1 701 74 HOH HOH . I 7 HOH A 2 702 124 HOH HOH . I 7 HOH A 3 703 33 HOH HOH . I 7 HOH A 4 704 184 HOH HOH . I 7 HOH A 5 705 154 HOH HOH . I 7 HOH A 6 706 214 HOH HOH . I 7 HOH A 7 707 305 HOH HOH . I 7 HOH A 8 708 11 HOH HOH . I 7 HOH A 9 709 165 HOH HOH . I 7 HOH A 10 710 132 HOH HOH . I 7 HOH A 11 711 255 HOH HOH . I 7 HOH A 12 712 320 HOH HOH . I 7 HOH A 13 713 196 HOH HOH . I 7 HOH A 14 714 72 HOH HOH . I 7 HOH A 15 715 133 HOH HOH . I 7 HOH A 16 716 118 HOH HOH . I 7 HOH A 17 717 24 HOH HOH . I 7 HOH A 18 718 141 HOH HOH . I 7 HOH A 19 719 222 HOH HOH . I 7 HOH A 20 720 142 HOH HOH . I 7 HOH A 21 721 254 HOH HOH . I 7 HOH A 22 722 51 HOH HOH . I 7 HOH A 23 723 172 HOH HOH . I 7 HOH A 24 724 161 HOH HOH . I 7 HOH A 25 725 180 HOH HOH . I 7 HOH A 26 726 147 HOH HOH . I 7 HOH A 27 727 63 HOH HOH . I 7 HOH A 28 728 69 HOH HOH . I 7 HOH A 29 729 28 HOH HOH . I 7 HOH A 30 730 317 HOH HOH . I 7 HOH A 31 731 187 HOH HOH . I 7 HOH A 32 732 36 HOH HOH . I 7 HOH A 33 733 102 HOH HOH . I 7 HOH A 34 734 113 HOH HOH . I 7 HOH A 35 735 2 HOH HOH . I 7 HOH A 36 736 114 HOH HOH . I 7 HOH A 37 737 131 HOH HOH . I 7 HOH A 38 738 186 HOH HOH . I 7 HOH A 39 739 101 HOH HOH . I 7 HOH A 40 740 108 HOH HOH . I 7 HOH A 41 741 19 HOH HOH . I 7 HOH A 42 742 25 HOH HOH . I 7 HOH A 43 743 304 HOH HOH . I 7 HOH A 44 744 213 HOH HOH . I 7 HOH A 45 745 7 HOH HOH . I 7 HOH A 46 746 3 HOH HOH . I 7 HOH A 47 747 122 HOH HOH . I 7 HOH A 48 748 158 HOH HOH . I 7 HOH A 49 749 294 HOH HOH . I 7 HOH A 50 750 201 HOH HOH . I 7 HOH A 51 751 65 HOH HOH . I 7 HOH A 52 752 27 HOH HOH . I 7 HOH A 53 753 45 HOH HOH . I 7 HOH A 54 754 144 HOH HOH . I 7 HOH A 55 755 81 HOH HOH . I 7 HOH A 56 756 22 HOH HOH . I 7 HOH A 57 757 12 HOH HOH . I 7 HOH A 58 758 16 HOH HOH . I 7 HOH A 59 759 9 HOH HOH . I 7 HOH A 60 760 66 HOH HOH . I 7 HOH A 61 761 159 HOH HOH . I 7 HOH A 62 762 46 HOH HOH . I 7 HOH A 63 763 120 HOH HOH . I 7 HOH A 64 764 5 HOH HOH . I 7 HOH A 65 765 324 HOH HOH . I 7 HOH A 66 766 20 HOH HOH . I 7 HOH A 67 767 71 HOH HOH . I 7 HOH A 68 768 1 HOH HOH . I 7 HOH A 69 769 64 HOH HOH . I 7 HOH A 70 770 315 HOH HOH . I 7 HOH A 71 771 44 HOH HOH . I 7 HOH A 72 772 129 HOH HOH . I 7 HOH A 73 773 104 HOH HOH . I 7 HOH A 74 774 60 HOH HOH . I 7 HOH A 75 775 8 HOH HOH . I 7 HOH A 76 776 176 HOH HOH . I 7 HOH A 77 777 10 HOH HOH . I 7 HOH A 78 778 30 HOH HOH . I 7 HOH A 79 779 86 HOH HOH . I 7 HOH A 80 780 26 HOH HOH . I 7 HOH A 81 781 91 HOH HOH . I 7 HOH A 82 782 193 HOH HOH . I 7 HOH A 83 783 17 HOH HOH . I 7 HOH A 84 784 96 HOH HOH . I 7 HOH A 85 785 48 HOH HOH . I 7 HOH A 86 786 75 HOH HOH . I 7 HOH A 87 787 188 HOH HOH . I 7 HOH A 88 788 211 HOH HOH . I 7 HOH A 89 789 97 HOH HOH . I 7 HOH A 90 790 47 HOH HOH . I 7 HOH A 91 791 109 HOH HOH . I 7 HOH A 92 792 58 HOH HOH . I 7 HOH A 93 793 29 HOH HOH . I 7 HOH A 94 794 130 HOH HOH . I 7 HOH A 95 795 79 HOH HOH . I 7 HOH A 96 796 106 HOH HOH . I 7 HOH A 97 797 68 HOH HOH . I 7 HOH A 98 798 31 HOH HOH . I 7 HOH A 99 799 23 HOH HOH . I 7 HOH A 100 800 148 HOH HOH . I 7 HOH A 101 801 15 HOH HOH . I 7 HOH A 102 802 89 HOH HOH . I 7 HOH A 103 803 39 HOH HOH . I 7 HOH A 104 804 41 HOH HOH . I 7 HOH A 105 805 14 HOH HOH . I 7 HOH A 106 806 53 HOH HOH . I 7 HOH A 107 807 4 HOH HOH . I 7 HOH A 108 808 43 HOH HOH . I 7 HOH A 109 809 50 HOH HOH . I 7 HOH A 110 810 18 HOH HOH . I 7 HOH A 111 811 238 HOH HOH . I 7 HOH A 112 812 300 HOH HOH . I 7 HOH A 113 813 95 HOH HOH . I 7 HOH A 114 814 206 HOH HOH . I 7 HOH A 115 815 179 HOH HOH . I 7 HOH A 116 816 77 HOH HOH . I 7 HOH A 117 817 13 HOH HOH . I 7 HOH A 118 818 6 HOH HOH . I 7 HOH A 119 819 194 HOH HOH . I 7 HOH A 120 820 135 HOH HOH . I 7 HOH A 121 821 107 HOH HOH . I 7 HOH A 122 822 32 HOH HOH . I 7 HOH A 123 823 93 HOH HOH . I 7 HOH A 124 824 138 HOH HOH . I 7 HOH A 125 825 110 HOH HOH . I 7 HOH A 126 826 42 HOH HOH . I 7 HOH A 127 827 218 HOH HOH . I 7 HOH A 128 828 52 HOH HOH . I 7 HOH A 129 829 112 HOH HOH . I 7 HOH A 130 830 166 HOH HOH . I 7 HOH A 131 831 173 HOH HOH . I 7 HOH A 132 832 103 HOH HOH . I 7 HOH A 133 833 117 HOH HOH . I 7 HOH A 134 834 94 HOH HOH . I 7 HOH A 135 835 54 HOH HOH . I 7 HOH A 136 836 244 HOH HOH . I 7 HOH A 137 837 67 HOH HOH . I 7 HOH A 138 838 119 HOH HOH . I 7 HOH A 139 839 100 HOH HOH . I 7 HOH A 140 840 40 HOH HOH . I 7 HOH A 141 841 251 HOH HOH . I 7 HOH A 142 842 56 HOH HOH . I 7 HOH A 143 843 271 HOH HOH . I 7 HOH A 144 844 84 HOH HOH . I 7 HOH A 145 845 248 HOH HOH . I 7 HOH A 146 846 62 HOH HOH . I 7 HOH A 147 847 59 HOH HOH . I 7 HOH A 148 848 35 HOH HOH . I 7 HOH A 149 849 200 HOH HOH . I 7 HOH A 150 850 189 HOH HOH . I 7 HOH A 151 851 83 HOH HOH . I 7 HOH A 152 852 127 HOH HOH . I 7 HOH A 153 853 78 HOH HOH . I 7 HOH A 154 854 140 HOH HOH . I 7 HOH A 155 855 215 HOH HOH . I 7 HOH A 156 856 99 HOH HOH . I 7 HOH A 157 857 80 HOH HOH . I 7 HOH A 158 858 134 HOH HOH . I 7 HOH A 159 859 195 HOH HOH . I 7 HOH A 160 860 34 HOH HOH . I 7 HOH A 161 861 87 HOH HOH . I 7 HOH A 162 862 61 HOH HOH . I 7 HOH A 163 863 76 HOH HOH . I 7 HOH A 164 864 149 HOH HOH . I 7 HOH A 165 865 177 HOH HOH . I 7 HOH A 166 866 219 HOH HOH . I 7 HOH A 167 867 82 HOH HOH . I 7 HOH A 168 868 85 HOH HOH . I 7 HOH A 169 869 240 HOH HOH . I 7 HOH A 170 870 136 HOH HOH . I 7 HOH A 171 871 146 HOH HOH . I 7 HOH A 172 872 178 HOH HOH . I 7 HOH A 173 873 92 HOH HOH . I 7 HOH A 174 874 90 HOH HOH . I 7 HOH A 175 875 21 HOH HOH . I 7 HOH A 176 876 150 HOH HOH . I 7 HOH A 177 877 88 HOH HOH . I 7 HOH A 178 878 220 HOH HOH . I 7 HOH A 179 879 226 HOH HOH . I 7 HOH A 180 880 318 HOH HOH . I 7 HOH A 181 881 302 HOH HOH . I 7 HOH A 182 882 168 HOH HOH . I 7 HOH A 183 883 257 HOH HOH . I 7 HOH A 184 884 105 HOH HOH . I 7 HOH A 185 885 235 HOH HOH . I 7 HOH A 186 886 207 HOH HOH . I 7 HOH A 187 887 126 HOH HOH . I 7 HOH A 188 888 190 HOH HOH . I 7 HOH A 189 889 249 HOH HOH . I 7 HOH A 190 890 115 HOH HOH . I 7 HOH A 191 891 316 HOH HOH . I 7 HOH A 192 892 171 HOH HOH . I 7 HOH A 193 893 243 HOH HOH . I 7 HOH A 194 894 49 HOH HOH . I 7 HOH A 195 895 169 HOH HOH . I 7 HOH A 196 896 322 HOH HOH . I 7 HOH A 197 897 156 HOH HOH . I 7 HOH A 198 898 323 HOH HOH . I 7 HOH A 199 899 181 HOH HOH . I 7 HOH A 200 900 125 HOH HOH . I 7 HOH A 201 901 309 HOH HOH . I 7 HOH A 202 902 306 HOH HOH . I 7 HOH A 203 903 170 HOH HOH . I 7 HOH A 204 904 221 HOH HOH . I 7 HOH A 205 905 288 HOH HOH . I 7 HOH A 206 906 209 HOH HOH . I 7 HOH A 207 907 297 HOH HOH . I 7 HOH A 208 908 303 HOH HOH . I 7 HOH A 209 909 212 HOH HOH . I 7 HOH A 210 910 217 HOH HOH . I 7 HOH A 211 911 321 HOH HOH . I 7 HOH A 212 912 224 HOH HOH . I 7 HOH A 213 913 139 HOH HOH . I 7 HOH A 214 914 291 HOH HOH . I 7 HOH A 215 915 55 HOH HOH . I 7 HOH A 216 916 38 HOH HOH . I 7 HOH A 217 917 70 HOH HOH . I 7 HOH A 218 918 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -28.002 19.411 -11.852 1 86.72 ? C1 GOL 606 A 1 HETATM 2 O O1 GOL . . . G 6 -28.021 19.768 -13.218 1 45.6 ? O1 GOL 606 A 1 HETATM 3 C C2 GOL . . . G 6 -26.931 18.352 -11.614 1 45.83 ? C2 GOL 606 A 1 HETATM 4 O O2 GOL . . . G 6 -25.889 18.547 -12.541 1 44.91 ? O2 GOL 606 A 1 HETATM 5 C C3 GOL . . . G 6 -26.355 18.508 -10.211 1 57.45 ? C3 GOL 606 A 1 HETATM 6 O O3 GOL . . . G 6 -25.396 19.541 -10.225 1 32.15 ? O3 GOL 606 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #