data_5IW5
#
_model_server_result.job_id            6oRqlgE--pNayhKDDZP7tg 
_model_server_result.datetime_utc      '2024-11-07 10:40:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5iw5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    5IW5 
#
_exptl.entry_id    5IW5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.227 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.99 
_cell.angle_gamma         90 
_cell.entry_id            5IW5 
_cell.length_a            104.863 
_cell.length_b            62.218 
_cell.length_c            86.877 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5IW5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1,2 
B,E,F,H 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_856 -x+3,y,-z+1 -1 0 0 0 1 0 0 0 -1 307.032276 0 86.547727 
3 'crystal symmetry operation' 2_855 -x+3,y,-z -1 0 0 0 1 0 0 0 -1 314.589 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND1 HIS 18 B HIS 17 1_555 A NE2 GLN 61 B GLN 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
metalc ? metalc1 A SG CYS 99 B CYS 98 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc2 A SG CYS 102 B CYS 101 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc3 A SG CYS 117 B CYS 116 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc4 A SG CYS 120 B CYS 119 1_555 C ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc5 B SG CYS 99 A CYS 98 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc6 B SG CYS 117 A CYS 116 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc7 B SG CYS 120 A CYS 119 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
#
_chem_comp.formula           'C11 H16 N2 O8 P 1' 
_chem_comp.formula_weight    335.227 
_chem_comp.id                NMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'NICOTINAMIDE MONONUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P NMN doub 237 n n 
P O1P NMN sing 238 n n 
P O2P NMN sing 239 n n 
P O5R NMN sing 240 n n 
O1P H1PO NMN sing 241 n n 
O2P H2PO NMN sing 242 n n 
O5R C5R NMN sing 243 n n 
C5R C4R NMN sing 244 n n 
C5R H5R1 NMN sing 245 n n 
C5R H5R2 NMN sing 246 n n 
C4R O4R NMN sing 247 n n 
C4R C3R NMN sing 248 n n 
C4R H4RC NMN sing 249 n n 
O4R C1R NMN sing 250 n n 
C3R O3R NMN sing 251 n n 
C3R C2R NMN sing 252 n n 
C3R H3RC NMN sing 253 n n 
O3R H3RO NMN sing 254 n n 
C2R O2R NMN sing 255 n n 
C2R C1R NMN sing 256 n n 
C2R H2RC NMN sing 257 n n 
O2R H2RO NMN sing 258 n n 
C1R N1 NMN sing 259 n n 
C1R H1RC NMN sing 260 n n 
N1 C2 NMN doub 261 n y 
N1 C6 NMN sing 262 n y 
C2 C3 NMN sing 263 n y 
C2 HC2 NMN sing 264 n n 
C3 C7 NMN sing 265 n n 
C3 C4 NMN doub 266 n y 
C7 O7 NMN doub 267 n n 
C7 N7 NMN sing 268 n n 
N7 HN71 NMN sing 269 n n 
N7 HN72 NMN sing 270 n n 
C4 C5 NMN sing 271 n y 
C4 HC4 NMN sing 272 n n 
C5 C6 NMN doub 273 n y 
C5 HC5 NMN sing 274 n n 
C6 HC6 NMN sing 275 n n 
#
_atom_sites.entry_id                     5IW5 
_atom_sites.fract_transf_matrix[1][1]    0.009536 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000832 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016073 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN B 1 301 301 ZN ZN . 
D 3 NMN B 1 302 302 NMN NMN . 
E 2 ZN A 1 301 301 ZN ZN . 
F 3 NMN A 1 302 302 NMN NMN . 
G 4 HOH B 1 401 401 HOH HOH . 
G 4 HOH B 2 402 402 HOH HOH . 
G 4 HOH B 3 403 403 HOH HOH . 
G 4 HOH B 4 404 404 HOH HOH . 
G 4 HOH B 5 405 405 HOH HOH . 
G 4 HOH B 6 406 406 HOH HOH . 
G 4 HOH B 7 407 407 HOH HOH . 
G 4 HOH B 8 408 408 HOH HOH . 
G 4 HOH B 9 409 410 HOH HOH . 
G 4 HOH B 10 410 411 HOH HOH . 
G 4 HOH B 11 411 412 HOH HOH . 
G 4 HOH B 12 412 413 HOH HOH . 
G 4 HOH B 13 413 414 HOH HOH . 
G 4 HOH B 14 414 415 HOH HOH . 
G 4 HOH B 15 415 416 HOH HOH . 
G 4 HOH B 16 416 417 HOH HOH . 
G 4 HOH B 17 417 418 HOH HOH . 
G 4 HOH B 18 418 419 HOH HOH . 
G 4 HOH B 19 419 420 HOH HOH . 
G 4 HOH B 20 420 421 HOH HOH . 
G 4 HOH B 21 421 422 HOH HOH . 
G 4 HOH B 22 422 423 HOH HOH . 
G 4 HOH B 23 423 424 HOH HOH . 
G 4 HOH B 24 424 425 HOH HOH . 
G 4 HOH B 25 425 426 HOH HOH . 
G 4 HOH B 26 426 427 HOH HOH . 
G 4 HOH B 27 427 428 HOH HOH . 
G 4 HOH B 28 428 429 HOH HOH . 
G 4 HOH B 29 429 430 HOH HOH . 
G 4 HOH B 30 430 431 HOH HOH . 
G 4 HOH B 31 431 432 HOH HOH . 
G 4 HOH B 32 432 433 HOH HOH . 
G 4 HOH B 33 433 434 HOH HOH . 
G 4 HOH B 34 434 435 HOH HOH . 
G 4 HOH B 35 435 409 HOH HOH . 
G 4 HOH B 36 436 436 HOH HOH . 
H 4 HOH A 1 401 401 HOH HOH . 
H 4 HOH A 2 402 402 HOH HOH . 
H 4 HOH A 3 403 403 HOH HOH . 
H 4 HOH A 4 404 404 HOH HOH . 
H 4 HOH A 5 405 405 HOH HOH . 
H 4 HOH A 6 406 406 HOH HOH . 
H 4 HOH A 7 407 407 HOH HOH . 
H 4 HOH A 8 408 408 HOH HOH . 
H 4 HOH A 9 409 409 HOH HOH . 
H 4 HOH A 10 410 410 HOH HOH . 
H 4 HOH A 11 411 411 HOH HOH . 
H 4 HOH A 12 412 412 HOH HOH . 
H 4 HOH A 13 413 413 HOH HOH . 
H 4 HOH A 14 414 414 HOH HOH . 
H 4 HOH A 15 415 415 HOH HOH . 
H 4 HOH A 16 416 416 HOH HOH . 
H 4 HOH A 17 417 417 HOH HOH . 
H 4 HOH A 18 418 418 HOH HOH . 
H 4 HOH A 19 419 419 HOH HOH . 
H 4 HOH A 20 420 420 HOH HOH . 
H 4 HOH A 21 421 421 HOH HOH . 
H 4 HOH A 22 422 422 HOH HOH . 
H 4 HOH A 23 423 423 HOH HOH . 
H 4 HOH A 24 424 424 HOH HOH . 
H 4 HOH A 25 425 425 HOH HOH . 
H 4 HOH A 26 426 426 HOH HOH . 
H 4 HOH A 27 427 427 HOH HOH . 
H 4 HOH A 28 428 428 HOH HOH . 
H 4 HOH A 29 429 429 HOH HOH . 
H 4 HOH A 30 430 430 HOH HOH . 
H 4 HOH A 31 431 431 HOH HOH . 
H 4 HOH A 32 432 432 HOH HOH . 
H 4 HOH A 33 433 433 HOH HOH . 
H 4 HOH A 34 434 434 HOH HOH . 
H 4 HOH A 35 435 435 HOH HOH . 
H 4 HOH A 36 436 436 HOH HOH . 
H 4 HOH A 37 437 437 HOH HOH . 
H 4 HOH A 38 438 438 HOH HOH . 
H 4 HOH A 39 439 439 HOH HOH . 
H 4 HOH A 40 440 440 HOH HOH . 
H 4 HOH A 41 441 441 HOH HOH . 
H 4 HOH A 42 442 442 HOH HOH . 
H 4 HOH A 43 443 443 HOH HOH . 
H 4 HOH A 44 444 444 HOH HOH . 
H 4 HOH A 45 445 445 HOH HOH . 
H 4 HOH A 46 446 446 HOH HOH . 
H 4 HOH A 47 447 447 HOH HOH . 
H 4 HOH A 48 448 448 HOH HOH . 
H 4 HOH A 49 449 449 HOH HOH . 
H 4 HOH A 50 450 450 HOH HOH . 
H 4 HOH A 51 451 451 HOH HOH . 
H 4 HOH A 52 452 452 HOH HOH . 
H 4 HOH A 53 453 453 HOH HOH . 
H 4 HOH A 54 454 454 HOH HOH . 
H 4 HOH A 55 455 455 HOH HOH . 
H 4 HOH A 56 456 456 HOH HOH . 
H 4 HOH A 57 457 457 HOH HOH . 
H 4 HOH A 58 458 458 HOH HOH . 
H 4 HOH A 59 459 459 HOH HOH . 
H 4 HOH A 60 460 460 HOH HOH . 
H 4 HOH A 61 461 461 HOH HOH . 
H 4 HOH A 62 462 462 HOH HOH . 
H 4 HOH A 63 463 463 HOH HOH . 
H 4 HOH A 64 464 464 HOH HOH . 
H 4 HOH A 65 465 465 HOH HOH . 
H 4 HOH A 66 466 466 HOH HOH . 
H 4 HOH A 67 467 467 HOH HOH . 
H 4 HOH A 68 468 468 HOH HOH . 
H 4 HOH A 69 469 469 HOH HOH . 
H 4 HOH A 70 470 470 HOH HOH . 
H 4 HOH A 71 471 471 HOH HOH . 
H 4 HOH A 72 472 472 HOH HOH . 
H 4 HOH A 73 473 473 HOH HOH . 
H 4 HOH A 74 474 474 HOH HOH . 
H 4 HOH A 75 475 475 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P NMN . . . F 3 145.687 63.964 0.566 1 164.87 ? O3P NMN 302 A 1 
HETATM 2 P P NMN . . . F 3 145.625 63.918 2.039 1 165.41 ? P NMN 302 A 1 
HETATM 3 O O1P NMN . . . F 3 146.631 64.822 2.648 1 165.92 ? O1P NMN 302 A 1 
HETATM 4 O O2P NMN . . . F 3 145.364 62.584 2.63 1 166.78 ? O2P NMN 302 A 1 
HETATM 5 O O5R NMN . . . F 3 144.295 64.639 2.399 1 71.29 ? O5R NMN 302 A 1 
HETATM 6 C C5R NMN . . . F 3 144.65 65.981 2.515 1 76.8 ? C5R NMN 302 A 1 
HETATM 7 C C4R NMN . . . F 3 144.03 66.256 3.804 1 74.6 ? C4R NMN 302 A 1 
HETATM 8 O O4R NMN . . . F 3 144.196 67.585 4.162 1 76.36 ? O4R NMN 302 A 1 
HETATM 9 C C3R NMN . . . F 3 142.651 66.177 3.323 1 71.22 ? C3R NMN 302 A 1 
HETATM 10 O O3R NMN . . . F 3 142.254 64.821 3.431 1 67.8 ? O3R NMN 302 A 1 
HETATM 11 C C2R NMN . . . F 3 141.986 67.28 4.136 1 74.52 ? C2R NMN 302 A 1 
HETATM 12 O O2R NMN . . . F 3 140.915 66.958 5.004 1 77.49 ? O2R NMN 302 A 1 
HETATM 13 C C1R NMN . . . F 3 143.102 67.804 4.968 1 75.59 ? C1R NMN 302 A 1 
HETATM 14 N N1 NMN . . . F 3 142.666 69.149 5.193 1 74.01 ? N1 NMN 302 A 1 
HETATM 15 C C2 NMN . . . F 3 141.487 69.056 5.75 1 73.98 ? C2 NMN 302 A 1 
HETATM 16 C C3 NMN . . . F 3 140.782 70.134 6.081 1 64.67 ? C3 NMN 302 A 1 
HETATM 17 C C7 NMN . . . F 3 139.523 69.742 6.72 1 67.34 ? C7 NMN 302 A 1 
HETATM 18 O O7 NMN . . . F 3 139.202 68.596 6.86 1 65.04 ? O7 NMN 302 A 1 
HETATM 19 N N7 NMN . . . F 3 138.802 70.759 7.158 1 74.91 ? N7 NMN 302 A 1 
HETATM 20 C C4 NMN . . . F 3 141.303 71.373 5.841 1 60.74 ? C4 NMN 302 A 1 
HETATM 21 C C5 NMN . . . F 3 142.558 71.459 5.265 1 60.4 ? C5 NMN 302 A 1 
HETATM 22 C C6 NMN . . . F 3 143.254 70.311 4.932 1 63.85 ? C6 NMN 302 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#