data_5IWC # _model_server_result.job_id 10-16LG0fFu0FbWzzSW4oQ _model_server_result.datetime_utc '2024-12-22 06:13:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5IWC # _exptl.entry_id 5IWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IWC _cell.length_a 66.04 _cell.length_b 87.53 _cell.length_c 98.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 54 A LYS 51 1_555 C C4A PLP . A PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B NZ LYS 54 B LYS 51 1_555 E C4A PLP . B PLP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 304 n y N1 C6 PLP sing 305 n y C2 C2A PLP sing 306 n n C2 C3 PLP sing 307 n y C2A H2A1 PLP sing 308 n n C2A H2A2 PLP sing 309 n n C2A H2A3 PLP sing 310 n n C3 O3 PLP sing 311 n n C3 C4 PLP doub 312 n y O3 HO3 PLP sing 313 n n C4 C4A PLP sing 314 n n C4 C5 PLP sing 315 n y C4A O4A PLP doub 316 n n C4A H4A PLP sing 317 n n C5 C6 PLP doub 318 n y C5 C5A PLP sing 319 n n C6 H6 PLP sing 320 n n C5A O4P PLP sing 321 n n C5A H5A1 PLP sing 322 n n C5A H5A2 PLP sing 323 n n O4P P PLP sing 324 n n P O1P PLP doub 325 n n P O2P PLP sing 326 n n P O3P PLP sing 327 n n O2P HOP2 PLP sing 328 n n O3P HOP3 PLP sing 329 n n # _atom_sites.entry_id 5IWC _atom_sites.fract_transf_matrix[1][1] 0.015142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 401 51 PLP LLP . D 3 6EQ A 1 402 1 6EQ C32 . E 2 PLP B 1 401 51 PLP LLP . F 3 6EQ B 1 402 2 6EQ C32 . G 4 HOH A 1 501 34 HOH HOH . G 4 HOH A 2 502 19 HOH HOH . G 4 HOH A 3 503 11 HOH HOH . G 4 HOH A 4 504 10 HOH HOH . G 4 HOH A 5 505 21 HOH HOH . G 4 HOH A 6 506 22 HOH HOH . G 4 HOH A 7 507 14 HOH HOH . G 4 HOH A 8 508 4 HOH HOH . G 4 HOH A 9 509 3 HOH HOH . G 4 HOH A 10 510 2 HOH HOH . G 4 HOH A 11 511 30 HOH HOH . G 4 HOH A 12 512 17 HOH HOH . G 4 HOH A 13 513 26 HOH HOH . G 4 HOH A 14 514 25 HOH HOH . G 4 HOH A 15 515 8 HOH HOH . G 4 HOH A 16 516 28 HOH HOH . G 4 HOH A 17 517 27 HOH HOH . G 4 HOH A 18 518 24 HOH HOH . G 4 HOH A 19 519 36 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 18 HOH HOH . H 4 HOH B 3 503 7 HOH HOH . H 4 HOH B 4 504 5 HOH HOH . H 4 HOH B 5 505 6 HOH HOH . H 4 HOH B 6 506 16 HOH HOH . H 4 HOH B 7 507 13 HOH HOH . H 4 HOH B 8 508 9 HOH HOH . H 4 HOH B 9 509 35 HOH HOH . H 4 HOH B 10 510 12 HOH HOH . H 4 HOH B 11 511 33 HOH HOH . H 4 HOH B 12 512 32 HOH HOH . H 4 HOH B 13 513 31 HOH HOH . H 4 HOH B 14 514 23 HOH HOH . H 4 HOH B 15 515 29 HOH HOH . H 4 HOH B 16 516 20 HOH HOH . H 4 HOH B 17 517 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . E 2 -17.369 -0.278 -25.34 1 33.16 ? N1 PLP 401 B 1 HETATM 2 C C2 PLP . . . E 2 -16.724 -1.442 -25.105 1 32.53 ? C2 PLP 401 B 1 HETATM 3 C C2A PLP . . . E 2 -15.257 -1.451 -24.794 1 31.1 ? C2A PLP 401 B 1 HETATM 4 C C3 PLP . . . E 2 -17.475 -2.71 -25.14 1 31.84 ? C3 PLP 401 B 1 HETATM 5 O O3 PLP . . . E 2 -16.881 -3.894 -24.894 1 32.31 ? O3 PLP 401 B 1 HETATM 6 C C4 PLP . . . E 2 -18.911 -2.666 -25.436 1 32.52 ? C4 PLP 401 B 1 HETATM 7 C C4A PLP . . . E 2 -19.777 -3.892 -25.501 1 32.02 ? C4A PLP 401 B 1 HETATM 8 C C5 PLP . . . E 2 -19.506 -1.343 -25.681 1 32.56 ? C5 PLP 401 B 1 HETATM 9 C C6 PLP . . . E 2 -18.685 -0.214 -25.615 1 32.85 ? C6 PLP 401 B 1 HETATM 10 C C5A PLP . . . E 2 -20.983 -1.237 -25.995 1 33.05 ? C5A PLP 401 B 1 HETATM 11 O O4P PLP . . . E 2 -21.818 -1.895 -25.034 1 30.57 ? O4P PLP 401 B 1 HETATM 12 P P PLP . . . E 2 -23.201 -2.596 -25.45 1 31.62 ? P PLP 401 B 1 HETATM 13 O O1P PLP . . . E 2 -23.877 -1.576 -26.323 1 36.04 ? O1P PLP 401 B 1 HETATM 14 O O2P PLP . . . E 2 -23.95 -2.79 -24.152 1 30.91 ? O2P PLP 401 B 1 HETATM 15 O O3P PLP . . . E 2 -22.824 -3.828 -26.195 1 28.81 ? O3P PLP 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #