data_5IWD # _model_server_result.job_id 1lr52vzWxGmn0FPFveJ0ig _model_server_result.datetime_utc '2024-10-19 04:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iwd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5IWD # _exptl.entry_id 5IWD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.3 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methylidene-3-(methylsulfanyl)-2-benzothiophen-4(5H)-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5IWD _cell.length_a 91.801 _cell.length_b 127.041 _cell.length_c 66.003 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IWD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 91.801 0 -33.0015 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 4 A LYS 4 1_555 B C10 6EV . A 6EV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 A NZ LYS 60 A LYS 60 1_555 C C10 6EV . A 6EV 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 A NZ LYS 192 A LYS 192 1_555 D C10 6EV . A 6EV 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale4 B C05 6EV . A 6EV 301 1_555 D O22 6EV . A 6EV 303 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C10 H8 O S2' _chem_comp.formula_weight 208.3 _chem_comp.id 6EV _chem_comp.mon_nstd_flag . _chem_comp.name 5-methylidene-3-(methylsulfanyl)-2-benzothiophen-4(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 S02 6EV sing 1 n n O22 C21 6EV doub 2 n n S02 C03 6EV sing 3 n n C10 C09 6EV doub 4 n n C21 C09 6EV sing 5 n n C21 C23 6EV sing 6 n n C09 C08 6EV sing 7 n n C03 C23 6EV doub 8 n y C03 S04 6EV sing 9 n y C23 C06 6EV sing 10 n y C08 C07 6EV doub 11 n n S04 C05 6EV sing 12 n y C06 C07 6EV sing 13 n n C06 C05 6EV doub 14 n y C10 H1 6EV sing 15 n n C10 H2 6EV sing 16 n n C01 H4 6EV sing 17 n n C01 H5 6EV sing 18 n n C01 H6 6EV sing 19 n n C05 H7 6EV sing 20 n n C07 H8 6EV sing 21 n n C08 H9 6EV sing 22 n n # _atom_sites.entry_id 5IWD _atom_sites.fract_transf_matrix[1][1] 0.010893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6EV A 1 301 4 6EV KSG . C 2 6EV A 1 302 60 6EV KSG . D 2 6EV A 1 303 192 6EV KSG . E 3 HOH A 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6EV . . . B 2 48.166 66.763 -9.688 0.5 115.12 ? C10 6EV 301 A 1 HETATM 2 C C01 6EV . . . B 2 52.494 64.348 -10.907 0.5 115.8 ? C01 6EV 301 A 1 HETATM 3 S S02 6EV . . . B 2 51.987 62.849 -10.157 0.5 118.22 ? S02 6EV 301 A 1 HETATM 4 C C03 6EV . . . B 2 51.284 63.173 -8.574 0.5 117.19 ? C03 6EV 301 A 1 HETATM 5 S S04 6EV . . . B 2 51.918 62.645 -7.061 0.5 113.45 ? S04 6EV 301 A 1 HETATM 6 C C05 6EV . . . B 2 50.706 63.342 -6.058 0.5 113.12 ? C05 6EV 301 A 1 HETATM 7 C C06 6EV . . . B 2 49.795 64.004 -6.92 0.5 116.66 ? C06 6EV 301 A 1 HETATM 8 C C07 6EV . . . B 2 48.538 64.774 -6.42 0.5 118.67 ? C07 6EV 301 A 1 HETATM 9 C C08 6EV . . . B 2 47.749 65.62 -7.467 0.5 120.01 ? C08 6EV 301 A 1 HETATM 10 C C09 6EV . . . B 2 48.367 65.683 -8.825 0.5 117.84 ? C09 6EV 301 A 1 HETATM 11 C C21 6EV . . . B 2 49.222 64.559 -9.261 0.5 117.77 ? C21 6EV 301 A 1 HETATM 12 O O22 6EV . . . B 2 49.193 64.198 -10.43 0.5 116.77 ? O22 6EV 301 A 1 HETATM 13 C C23 6EV . . . B 2 50.108 63.903 -8.258 0.5 117.95 ? C23 6EV 301 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 31 _model_server_stats.element_count 13 #