data_5IWF # _model_server_result.job_id pJudn93HSPpZwymNgZB38g _model_server_result.datetime_utc '2024-11-07 02:46:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5iwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5IWF # _exptl.entry_id 5IWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.391 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[[2-[2-(dimethylamino)ethyl-ethyl-amino]-2-oxidanylidene-ethyl]amino]methyl]pyridine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.28 _cell.angle_gamma 90 _cell.entry_id 5IWF _cell.length_a 117.067 _cell.length_b 61.918 _cell.length_c 46.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5IWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 B N06 LQT . A LQT 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 B N09 LQT . A LQT 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc6 C MN MN . A MN 602 1_555 D O HOH . A HOH 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C15 H25 N5 O2' _chem_comp.formula_weight 307.391 _chem_comp.id LQT _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[[2-[2-(dimethylamino)ethyl-ethyl-amino]-2-oxidanylidene-ethyl]amino]methyl]pyridine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms KDOAM25A # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 LQT sing 194 n n C02 C03 LQT sing 195 n n C02 O22 LQT doub 196 n n C03 C04 LQT doub 197 n y C03 C21 LQT sing 198 n y C04 C05 LQT sing 199 n y C05 N06 LQT doub 200 n y N06 C07 LQT sing 201 n y C07 C08 LQT sing 202 n n C07 C21 LQT doub 203 n y C08 N09 LQT sing 204 n n N09 C10 LQT sing 205 n n C10 C11 LQT sing 206 n n C11 N12 LQT sing 207 n n C11 O20 LQT doub 208 n n N12 C13 LQT sing 209 n n N12 C15 LQT sing 210 n n C13 C14 LQT sing 211 n n C15 C16 LQT sing 212 n n C16 N17 LQT sing 213 n n N17 C18 LQT sing 214 n n N17 C19 LQT sing 215 n n N01 HN01 LQT sing 216 n n N01 HN0A LQT sing 217 n n C04 H04 LQT sing 218 n n C05 H05 LQT sing 219 n n C08 H08 LQT sing 220 n n C08 H08A LQT sing 221 n n N09 HN09 LQT sing 222 n n C10 H10 LQT sing 223 n n C10 H10A LQT sing 224 n n C13 H13 LQT sing 225 n n C13 H13A LQT sing 226 n n C14 H14 LQT sing 227 n n C14 H14A LQT sing 228 n n C14 H14B LQT sing 229 n n C15 H15 LQT sing 230 n n C15 H15A LQT sing 231 n n C16 H16 LQT sing 232 n n C16 H16A LQT sing 233 n n C18 H18 LQT sing 234 n n C18 H18A LQT sing 235 n n C18 H18B LQT sing 236 n n C19 H19 LQT sing 237 n n C19 H19A LQT sing 238 n n C19 H19B LQT sing 239 n n C21 H21 LQT sing 240 n n # _atom_sites.entry_id 5IWF _atom_sites.fract_transf_matrix[1][1] 0.008542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00034 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LQT A 1 601 1 LQT LQT . C 3 MN A 1 602 1 MN MN . D 4 HOH A 1 701 45 HOH HOH . D 4 HOH A 2 702 17 HOH HOH . D 4 HOH A 3 703 39 HOH HOH . D 4 HOH A 4 704 121 HOH HOH . D 4 HOH A 5 705 11 HOH HOH . D 4 HOH A 6 706 2 HOH HOH . D 4 HOH A 7 707 53 HOH HOH . D 4 HOH A 8 708 3 HOH HOH . D 4 HOH A 9 709 48 HOH HOH . D 4 HOH A 10 710 69 HOH HOH . D 4 HOH A 11 711 74 HOH HOH . D 4 HOH A 12 712 112 HOH HOH . D 4 HOH A 13 713 42 HOH HOH . D 4 HOH A 14 714 120 HOH HOH . D 4 HOH A 15 715 109 HOH HOH . D 4 HOH A 16 716 5 HOH HOH . D 4 HOH A 17 717 6 HOH HOH . D 4 HOH A 18 718 47 HOH HOH . D 4 HOH A 19 719 82 HOH HOH . D 4 HOH A 20 720 105 HOH HOH . D 4 HOH A 21 721 49 HOH HOH . D 4 HOH A 22 722 25 HOH HOH . D 4 HOH A 23 723 43 HOH HOH . D 4 HOH A 24 724 54 HOH HOH . D 4 HOH A 25 725 38 HOH HOH . D 4 HOH A 26 726 32 HOH HOH . D 4 HOH A 27 727 18 HOH HOH . D 4 HOH A 28 728 31 HOH HOH . D 4 HOH A 29 729 16 HOH HOH . D 4 HOH A 30 730 123 HOH HOH . D 4 HOH A 31 731 28 HOH HOH . D 4 HOH A 32 732 9 HOH HOH . D 4 HOH A 33 733 14 HOH HOH . D 4 HOH A 34 734 1 HOH HOH . D 4 HOH A 35 735 10 HOH HOH . D 4 HOH A 36 736 37 HOH HOH . D 4 HOH A 37 737 34 HOH HOH . D 4 HOH A 38 738 26 HOH HOH . D 4 HOH A 39 739 24 HOH HOH . D 4 HOH A 40 740 29 HOH HOH . D 4 HOH A 41 741 67 HOH HOH . D 4 HOH A 42 742 55 HOH HOH . D 4 HOH A 43 743 90 HOH HOH . D 4 HOH A 44 744 40 HOH HOH . D 4 HOH A 45 745 103 HOH HOH . D 4 HOH A 46 746 58 HOH HOH . D 4 HOH A 47 747 46 HOH HOH . D 4 HOH A 48 748 36 HOH HOH . D 4 HOH A 49 749 62 HOH HOH . D 4 HOH A 50 750 4 HOH HOH . D 4 HOH A 51 751 60 HOH HOH . D 4 HOH A 52 752 79 HOH HOH . D 4 HOH A 53 753 77 HOH HOH . D 4 HOH A 54 754 41 HOH HOH . D 4 HOH A 55 755 98 HOH HOH . D 4 HOH A 56 756 7 HOH HOH . D 4 HOH A 57 757 71 HOH HOH . D 4 HOH A 58 758 30 HOH HOH . D 4 HOH A 59 759 51 HOH HOH . D 4 HOH A 60 760 65 HOH HOH . D 4 HOH A 61 761 78 HOH HOH . D 4 HOH A 62 762 81 HOH HOH . D 4 HOH A 63 763 56 HOH HOH . D 4 HOH A 64 764 50 HOH HOH . D 4 HOH A 65 765 13 HOH HOH . D 4 HOH A 66 766 72 HOH HOH . D 4 HOH A 67 767 85 HOH HOH . D 4 HOH A 68 768 96 HOH HOH . D 4 HOH A 69 769 22 HOH HOH . D 4 HOH A 70 770 15 HOH HOH . D 4 HOH A 71 771 20 HOH HOH . D 4 HOH A 72 772 12 HOH HOH . D 4 HOH A 73 773 8 HOH HOH . D 4 HOH A 74 774 61 HOH HOH . D 4 HOH A 75 775 92 HOH HOH . D 4 HOH A 76 776 27 HOH HOH . D 4 HOH A 77 777 108 HOH HOH . D 4 HOH A 78 778 21 HOH HOH . D 4 HOH A 79 779 63 HOH HOH . D 4 HOH A 80 780 106 HOH HOH . D 4 HOH A 81 781 68 HOH HOH . D 4 HOH A 82 782 66 HOH HOH . D 4 HOH A 83 783 101 HOH HOH . D 4 HOH A 84 784 64 HOH HOH . D 4 HOH A 85 785 118 HOH HOH . D 4 HOH A 86 786 93 HOH HOH . D 4 HOH A 87 787 73 HOH HOH . D 4 HOH A 88 788 88 HOH HOH . D 4 HOH A 89 789 33 HOH HOH . D 4 HOH A 90 790 116 HOH HOH . D 4 HOH A 91 791 115 HOH HOH . D 4 HOH A 92 792 117 HOH HOH . D 4 HOH A 93 793 104 HOH HOH . D 4 HOH A 94 794 99 HOH HOH . D 4 HOH A 95 795 97 HOH HOH . D 4 HOH A 96 796 102 HOH HOH . D 4 HOH A 97 797 80 HOH HOH . D 4 HOH A 98 798 111 HOH HOH . D 4 HOH A 99 799 70 HOH HOH . D 4 HOH A 100 800 122 HOH HOH . D 4 HOH A 101 801 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 LQT . . . B 2 -23.701 20.37 8.436 1 22.72 ? N01 LQT 601 A 1 HETATM 2 C C02 LQT . . . B 2 -23.07 19.272 8.011 1 22.06 ? C02 LQT 601 A 1 HETATM 3 C C03 LQT . . . B 2 -23.284 18.809 6.602 1 19.69 ? C03 LQT 601 A 1 HETATM 4 C C04 LQT . . . B 2 -23.266 17.452 6.315 1 22.36 ? C04 LQT 601 A 1 HETATM 5 C C05 LQT . . . B 2 -23.464 17.055 5.003 1 18 ? C05 LQT 601 A 1 HETATM 6 N N06 LQT . . . B 2 -23.668 17.942 4.004 1 17.59 ? N06 LQT 601 A 1 HETATM 7 C C07 LQT . . . B 2 -23.684 19.265 4.277 1 18.18 ? C07 LQT 601 A 1 HETATM 8 C C08 LQT . . . B 2 -23.916 20.253 3.13 1 20.43 ? C08 LQT 601 A 1 HETATM 9 N N09 LQT . . . B 2 -23.452 19.72 1.852 1 26.18 ? N09 LQT 601 A 1 HETATM 10 C C10 LQT . . . B 2 -22.017 19.927 1.646 1 33.92 ? C10 LQT 601 A 1 HETATM 11 C C11 LQT . . . B 2 -21.798 21.288 0.939 1 36.8 ? C11 LQT 601 A 1 HETATM 12 N N12 LQT . . . B 2 -20.596 21.914 0.974 1 39.8 ? N12 LQT 601 A 1 HETATM 13 C C13 LQT . . . B 2 -19.464 21.33 1.699 1 35.43 ? C13 LQT 601 A 1 HETATM 14 C C14 LQT . . . B 2 -18.615 20.441 0.785 1 34.49 ? C14 LQT 601 A 1 HETATM 15 C C15 LQT . . . B 2 -20.449 23.205 0.299 1 46.92 ? C15 LQT 601 A 1 HETATM 16 C C16 LQT . . . B 2 -19.998 23.01 -1.162 1 53.31 ? C16 LQT 601 A 1 HETATM 17 N N17 LQT . . . B 2 -20.862 23.76 -2.064 1 57.34 ? N17 LQT 601 A 1 HETATM 18 C C18 LQT . . . B 2 -21.155 22.941 -3.23 1 59.88 ? C18 LQT 601 A 1 HETATM 19 C C19 LQT . . . B 2 -20.186 24.974 -2.481 1 56.39 ? C19 LQT 601 A 1 HETATM 20 O O20 LQT . . . B 2 -22.703 21.787 0.352 1 38.38 ? O20 LQT 601 A 1 HETATM 21 C C21 LQT . . . B 2 -23.493 19.723 5.577 1 16.66 ? C21 LQT 601 A 1 HETATM 22 O O22 LQT . . . B 2 -22.313 18.638 8.758 1 20.4 ? O22 LQT 601 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #